Wall clock time and date at job start Tue Mar 31 2020 20:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46920 * 2 1 4 4 C 1.35316 * 125.86667 * 125.00436 * 3 2 1 5 5 C 1.35347 * 106.17379 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.74869 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47036 * 125.00369 * 6 5 4 8 8 O 1.21274 * 120.00275 * 359.97438 * 7 6 5 9 9 N 1.34786 * 120.00012 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00099 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47094 * 179.97438 * 10 9 7 12 12 H 1.08994 * 108.57303 * 57.94223 * 11 10 9 13 13 C 1.47485 * 108.55241 * 175.84823 * 11 10 9 14 14 N 1.50108 * 106.48987 * 178.01187 * 13 11 10 15 15 C 1.36933 * 120.64138 * 111.36875 * 14 13 11 16 16 H 1.08003 * 120.00245 * 215.31398 * 15 14 13 17 17 C 1.38814 * 119.99970 * 35.31788 * 15 14 13 18 18 N 1.31613 * 120.00569 * 198.46115 * 17 15 14 19 19 Si 1.86807 * 119.99654 * 18.45785 * 17 15 14 20 20 H 1.48496 * 109.47192 * 264.80464 * 19 17 15 21 21 H 1.48501 * 109.47124 * 24.80853 * 19 17 15 22 22 H 1.48506 * 109.46597 * 144.80726 * 19 17 15 23 23 C 1.43430 * 118.72701 * 291.09792 * 14 13 11 24 24 C 1.55331 * 116.24190 * 89.62298 * 23 14 13 25 25 C 1.55184 * 108.87352 * 319.46856 * 24 23 14 26 26 O 1.39645 * 110.56826 * 322.14107 * 25 24 23 27 27 N 1.33771 * 106.49769 * 0.26045 * 5 4 3 28 28 N 1.28631 * 108.88424 * 359.56619 * 27 5 4 29 29 H 1.09005 * 109.46645 * 299.99562 * 1 2 3 30 30 H 1.09004 * 109.47585 * 59.99546 * 1 2 3 31 31 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46645 * 240.00437 * 2 1 3 33 33 H 1.08995 * 109.47000 * 120.00565 * 2 1 3 34 34 H 1.08004 * 126.91024 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.47720 * 5.00129 * 6 5 4 36 36 H 1.09007 * 109.47121 * 245.00070 * 6 5 4 37 37 H 0.97003 * 119.99709 * 359.97438 * 9 7 6 38 38 H 1.08999 * 109.47586 * 59.99714 * 10 9 7 39 39 H 1.09007 * 109.46904 * 299.99774 * 10 9 7 40 40 H 1.08998 * 110.11643 * 58.79054 * 13 11 10 41 41 H 1.09002 * 110.15022 * 297.24172 * 13 11 10 42 42 H 0.96999 * 120.00813 * 179.97438 * 18 17 15 43 43 H 1.09005 * 108.12920 * 211.38710 * 23 14 13 44 44 H 1.09001 * 108.12354 * 327.86613 * 23 14 13 45 45 H 1.08998 * 109.56412 * 79.28485 * 24 23 14 46 46 H 1.09000 * 109.56733 * 199.64671 * 24 23 14 47 47 H 1.09001 * 109.25871 * 82.42332 * 25 24 23 48 48 H 1.09001 * 109.25748 * 201.86388 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8756 1.9190 0.8982 5 6 3.0541 3.2075 0.5243 6 6 3.9238 4.2320 1.2062 7 6 4.8951 4.8099 0.2093 8 8 4.8827 4.4271 -0.9413 9 7 5.7784 5.7514 0.5969 10 6 6.7229 6.3127 -0.3720 11 6 7.6058 7.3529 0.3203 12 1 8.1216 6.8725 1.1516 13 6 8.6127 7.8312 -0.6454 14 7 9.4184 8.8806 0.0637 15 6 10.7295 8.6537 0.3871 16 1 11.1369 9.0547 1.3035 17 6 11.5351 7.9083 -0.4628 18 7 12.6549 7.3817 -0.0145 19 14 11.0296 7.6524 -2.2429 20 1 10.3117 6.3591 -2.3726 21 1 10.1358 8.7596 -2.6677 22 1 12.2398 7.6353 -3.1034 23 6 8.7903 10.1279 0.3907 24 6 8.0824 10.1992 1.7715 25 6 7.3364 8.8618 2.0227 26 8 6.7722 8.3846 0.8378 27 7 2.3026 3.3941 -0.5666 28 7 1.7060 2.2916 -0.8547 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.3272 1.4202 1.7430 35 1 4.4754 3.7580 2.0181 36 1 3.2987 5.0293 1.6086 37 1 5.7885 6.0573 1.5174 38 1 6.1718 6.7870 -1.1840 39 1 7.3477 5.5151 -0.7743 40 1 8.1208 8.2643 -1.5164 41 1 9.2593 7.0089 -0.9519 42 1 13.2177 6.8605 -0.6083 43 1 9.5500 10.9090 0.3584 44 1 8.0523 10.3484 -0.3806 45 1 8.8243 10.3561 2.5544 46 1 7.3675 11.0220 1.7731 47 1 8.0404 8.1243 2.4082 48 1 6.5473 9.0228 2.7572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150012486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:46 Heat of formation + Delta-G solvation = 52.393470 kcal Electronic energy + Delta-G solvation = -29377.824677 eV Core-core repulsion = 25278.624167 eV Total energy + Delta-G solvation = -4099.200510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.42044 -39.84781 -38.95964 -35.85454 -35.25813 -34.71889 -32.94453 -32.21634 -31.71443 -31.14692 -29.26581 -28.17154 -25.90273 -25.23960 -25.00677 -22.71744 -22.10487 -21.50452 -21.32786 -20.06968 -19.71128 -17.76400 -17.16501 -17.05852 -16.49655 -16.39705 -15.79303 -15.66083 -15.43868 -14.87932 -14.82825 -14.64026 -14.34117 -13.99129 -13.78805 -13.36627 -13.21806 -13.05098 -12.98171 -12.76239 -12.59388 -12.41040 -12.18688 -12.12023 -12.01381 -11.66279 -11.51016 -11.25269 -10.88114 -10.75426 -10.58752 -10.27251 -10.21567 -10.04959 -9.87782 -9.79930 -9.60391 -9.30579 -9.05350 -8.87143 -8.64925 -6.94808 -6.03609 -3.47130 1.40194 2.07461 2.39385 2.79149 3.27746 3.35861 3.45930 3.51258 3.93503 4.15902 4.26599 4.29452 4.47046 4.51726 4.56388 4.72298 4.75561 4.96397 4.98927 5.06587 5.14111 5.30241 5.30717 5.34325 5.43975 5.49568 5.57756 5.68051 5.69851 5.78807 5.88506 5.92696 6.00157 6.05996 6.15256 6.23267 6.36828 6.41792 6.50274 6.53392 6.61424 6.70403 6.86744 7.63739 7.64000 7.95288 8.34274 8.38478 8.40984 8.88344 9.63812 10.07870 11.11839 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.002322 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.097048 B =12058.263356 C =12929.192697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.295 5.295 4 C -0.048 4.048 5 C -0.004 4.004 6 C -0.054 4.054 7 C 0.512 3.488 8 O -0.526 6.526 9 N -0.721 5.721 10 C 0.115 3.885 11 C 0.064 3.936 12 H 0.073 0.927 13 C 0.100 3.900 14 N -0.599 5.599 15 C -0.268 4.268 16 H 0.082 0.918 17 C 0.032 3.968 18 N -0.904 5.904 19 Si 0.878 3.122 20 H -0.286 1.286 21 H -0.266 1.266 22 H -0.300 1.300 23 C 0.159 3.841 24 C -0.170 4.170 25 C 0.062 3.938 26 O -0.353 6.353 27 N -0.238 5.238 28 N -0.086 5.086 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.190 0.810 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.401 0.599 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.264 0.736 43 H 0.047 0.953 44 H 0.032 0.968 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.558 -12.827 7.845 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.089 5.089 4 C -0.199 4.199 5 C -0.143 4.143 6 C -0.095 4.095 7 C 0.296 3.704 8 O -0.401 6.401 9 N -0.373 5.373 10 C -0.010 4.010 11 C 0.004 3.996 12 H 0.091 0.909 13 C -0.025 4.025 14 N -0.321 5.321 15 C -0.396 4.396 16 H 0.100 0.900 17 C -0.168 4.168 18 N -0.546 5.546 19 Si 0.708 3.292 20 H -0.213 1.213 21 H -0.191 1.191 22 H -0.228 1.228 23 C 0.031 3.969 24 C -0.211 4.211 25 C -0.015 4.015 26 O -0.272 6.272 27 N -0.105 5.105 28 N -0.066 5.066 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.207 0.793 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.386 -12.823 5.576 26.394 hybrid contribution 0.800 -0.558 0.634 1.164 sum -21.586 -13.380 6.210 26.145 Atomic orbital electron populations 1.22082 0.92683 1.03662 1.04096 1.22077 0.96921 0.76632 1.05239 1.47427 1.30811 1.12023 1.18629 1.23294 1.00884 0.95416 1.00271 1.21221 1.02288 0.93966 0.96797 1.19876 0.95468 0.97127 0.97078 1.20298 0.81210 0.79635 0.89229 1.90754 1.69983 1.59947 1.19451 1.45857 1.36234 1.41225 1.13994 1.21713 0.91354 0.95650 0.92242 1.22099 0.90902 0.87433 0.99150 0.90887 1.21470 0.92733 0.93941 0.94372 1.44150 1.08587 1.11395 1.67962 1.18818 0.83955 1.33093 1.03753 0.90010 1.25431 0.95236 0.98399 0.97750 1.69819 1.14558 1.34692 1.35481 0.86917 0.77169 0.78170 0.86935 1.21330 1.19086 1.22814 1.20319 0.95346 0.88290 0.92959 1.23545 0.99040 0.97060 1.01470 1.22444 0.96185 0.96515 0.86381 1.87611 1.45986 1.53740 1.39815 1.75131 1.07610 1.15625 1.12120 1.78298 1.20962 0.92787 1.14538 0.91746 0.90587 0.89914 0.88309 0.87705 0.79329 0.87194 0.87106 0.76533 0.90847 0.90473 0.93366 0.89892 0.92631 0.93475 0.94959 0.92022 0.92410 0.92371 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 10.04 37.16 0.37 -0.32 16 2 C 0.11 0.52 7.17 -4.04 -0.03 0.49 16 3 N -0.30 -2.82 3.44 -61.26 -0.21 -3.04 16 4 C -0.05 -0.42 11.49 -17.05 -0.20 -0.62 16 5 C 0.00 -0.05 6.00 -82.78 -0.50 -0.54 16 6 C -0.05 -0.52 6.28 -29.03 -0.18 -0.70 16 7 C 0.51 7.26 7.82 -10.98 -0.09 7.17 16 8 O -0.53 -10.06 15.61 5.56 0.09 -9.97 16 9 N -0.72 -9.53 5.43 -60.30 -0.33 -9.86 16 10 C 0.11 1.85 5.24 -4.05 -0.02 1.83 16 11 C 0.06 1.11 2.11 -29.39 -0.06 1.05 16 12 H 0.07 1.29 6.77 -51.93 -0.35 0.94 16 13 C 0.10 2.09 3.45 -4.68 -0.02 2.07 16 14 N -0.60 -13.74 2.22 -174.20 -0.39 -14.12 16 15 C -0.27 -7.21 9.98 -15.06 -0.15 -7.36 16 16 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 17 C 0.03 0.90 5.29 -17.43 -0.09 0.81 16 18 N -0.90 -26.96 13.97 55.49 0.78 -26.19 16 19 Si 0.88 21.98 24.67 -169.99 -4.19 17.79 16 20 H -0.29 -6.91 6.70 56.52 0.38 -6.53 16 21 H -0.27 -6.59 7.01 56.52 0.40 -6.20 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 23 C 0.16 3.18 5.32 -4.43 -0.02 3.15 16 24 C -0.17 -2.79 6.75 -24.34 -0.16 -2.96 16 25 C 0.06 0.96 6.38 38.31 0.24 1.20 16 26 O -0.35 -5.87 9.54 -31.95 -0.30 -6.17 16 27 N -0.24 -3.74 11.84 33.29 0.39 -3.35 16 28 N -0.09 -1.19 12.91 60.35 0.78 -0.42 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 31 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.16 8.07 -51.93 -0.42 -0.25 16 34 H 0.19 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.11 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.11 0.87 8.14 -51.92 -0.42 0.44 16 37 H 0.40 4.21 8.33 -40.82 -0.34 3.87 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 40 H 0.05 1.00 8.05 -51.93 -0.42 0.58 16 41 H 0.08 1.88 4.29 -51.93 -0.22 1.66 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.05 0.96 7.98 -51.93 -0.41 0.55 16 44 H 0.03 0.63 7.98 -51.93 -0.41 0.22 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.94 6.66 -51.93 -0.35 0.60 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -37.20 385.84 -6.06 -43.26 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.58 Total: 0.97 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.90 Total: 5.27 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 1.02 Total: -56.97 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.22 Total: -16.14 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.19 Total: 17.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.20 -6.06 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150012486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.656 kcal (2) G-P(sol) polarization free energy of solvation -37.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds