Wall clock time and date at job start Tue Mar 31 2020 20:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46920 * 2 1 4 4 C 1.35316 * 125.86667 * 125.00436 * 3 2 1 5 5 C 1.35347 * 106.17379 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.74869 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47036 * 125.00369 * 6 5 4 8 8 O 1.21274 * 120.00275 * 359.97438 * 7 6 5 9 9 N 1.34786 * 120.00012 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00099 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47094 * 179.97438 * 10 9 7 12 12 H 1.08994 * 108.57303 * 57.94223 * 11 10 9 13 13 C 1.47485 * 108.55241 * 175.84823 * 11 10 9 14 14 N 1.50108 * 106.48987 * 178.01187 * 13 11 10 15 15 C 1.36933 * 120.64138 * 111.36875 * 14 13 11 16 16 H 1.08003 * 120.00245 * 215.31398 * 15 14 13 17 17 C 1.38814 * 119.99970 * 35.31788 * 15 14 13 18 18 N 1.31613 * 120.00569 * 198.46115 * 17 15 14 19 19 Si 1.86807 * 119.99654 * 18.45785 * 17 15 14 20 20 H 1.48496 * 109.47192 * 264.80464 * 19 17 15 21 21 H 1.48501 * 109.47124 * 24.80853 * 19 17 15 22 22 H 1.48506 * 109.46597 * 144.80726 * 19 17 15 23 23 C 1.43430 * 118.72701 * 291.09792 * 14 13 11 24 24 C 1.55331 * 116.24190 * 89.62298 * 23 14 13 25 25 C 1.55184 * 108.87352 * 319.46856 * 24 23 14 26 26 O 1.39645 * 110.56826 * 322.14107 * 25 24 23 27 27 N 1.33771 * 106.49769 * 0.26045 * 5 4 3 28 28 N 1.28631 * 108.88424 * 359.56619 * 27 5 4 29 29 H 1.09005 * 109.46645 * 299.99562 * 1 2 3 30 30 H 1.09004 * 109.47585 * 59.99546 * 1 2 3 31 31 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46645 * 240.00437 * 2 1 3 33 33 H 1.08995 * 109.47000 * 120.00565 * 2 1 3 34 34 H 1.08004 * 126.91024 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.47720 * 5.00129 * 6 5 4 36 36 H 1.09007 * 109.47121 * 245.00070 * 6 5 4 37 37 H 0.97003 * 119.99709 * 359.97438 * 9 7 6 38 38 H 1.08999 * 109.47586 * 59.99714 * 10 9 7 39 39 H 1.09007 * 109.46904 * 299.99774 * 10 9 7 40 40 H 1.08998 * 110.11643 * 58.79054 * 13 11 10 41 41 H 1.09002 * 110.15022 * 297.24172 * 13 11 10 42 42 H 0.96999 * 120.00813 * 179.97438 * 18 17 15 43 43 H 1.09005 * 108.12920 * 211.38710 * 23 14 13 44 44 H 1.09001 * 108.12354 * 327.86613 * 23 14 13 45 45 H 1.08998 * 109.56412 * 79.28485 * 24 23 14 46 46 H 1.09000 * 109.56733 * 199.64671 * 24 23 14 47 47 H 1.09001 * 109.25871 * 82.42332 * 25 24 23 48 48 H 1.09001 * 109.25748 * 201.86388 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8756 1.9190 0.8982 5 6 3.0541 3.2075 0.5243 6 6 3.9238 4.2320 1.2062 7 6 4.8951 4.8099 0.2093 8 8 4.8827 4.4271 -0.9413 9 7 5.7784 5.7514 0.5969 10 6 6.7229 6.3127 -0.3720 11 6 7.6058 7.3529 0.3203 12 1 8.1216 6.8725 1.1516 13 6 8.6127 7.8312 -0.6454 14 7 9.4184 8.8806 0.0637 15 6 10.7295 8.6537 0.3871 16 1 11.1369 9.0547 1.3035 17 6 11.5351 7.9083 -0.4628 18 7 12.6549 7.3817 -0.0145 19 14 11.0296 7.6524 -2.2429 20 1 10.3117 6.3591 -2.3726 21 1 10.1358 8.7596 -2.6677 22 1 12.2398 7.6353 -3.1034 23 6 8.7903 10.1279 0.3907 24 6 8.0824 10.1992 1.7715 25 6 7.3364 8.8618 2.0227 26 8 6.7722 8.3846 0.8378 27 7 2.3026 3.3941 -0.5666 28 7 1.7060 2.2916 -0.8547 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.3272 1.4202 1.7430 35 1 4.4754 3.7580 2.0181 36 1 3.2987 5.0293 1.6086 37 1 5.7885 6.0573 1.5174 38 1 6.1718 6.7870 -1.1840 39 1 7.3477 5.5151 -0.7743 40 1 8.1208 8.2643 -1.5164 41 1 9.2593 7.0089 -0.9519 42 1 13.2177 6.8605 -0.6083 43 1 9.5500 10.9090 0.3584 44 1 8.0523 10.3484 -0.3806 45 1 8.8243 10.3561 2.5544 46 1 7.3675 11.0220 1.7731 47 1 8.0404 8.1243 2.4082 48 1 6.5473 9.0228 2.7572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150012486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:45 Heat of formation + Delta-G solvation = 23.067426 kcal Electronic energy + Delta-G solvation = -29379.096350 eV Core-core repulsion = 25278.624167 eV Total energy + Delta-G solvation = -4100.472183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.17457 -41.15693 -40.21350 -37.00087 -36.46105 -35.95427 -33.97615 -33.81750 -33.27825 -31.70654 -30.63851 -29.22884 -27.43068 -26.82210 -25.54125 -24.27131 -22.96463 -22.75190 -22.26567 -21.34803 -21.05484 -18.99620 -18.48442 -18.01503 -17.80365 -17.41949 -17.17021 -17.05837 -16.37878 -16.11875 -15.86305 -15.71032 -15.51732 -15.30926 -14.80620 -14.55944 -14.45261 -14.34020 -14.31203 -13.97683 -13.74584 -13.58819 -13.32968 -13.11289 -13.04277 -12.90218 -12.64346 -12.45850 -12.31747 -12.29642 -11.85308 -11.77503 -11.64172 -11.60106 -11.30367 -10.98631 -10.92249 -10.76310 -10.41877 -10.12547 -10.03307 -8.86320 -8.21341 -5.60348 0.71372 1.26767 1.39829 1.48240 1.49051 1.60950 1.74136 2.30845 2.37992 2.90907 2.97247 3.27359 3.35095 3.69018 3.90367 3.93805 3.97725 3.98424 4.06339 4.24355 4.25790 4.30612 4.32348 4.39582 4.43359 4.47980 4.49617 4.59704 4.64266 4.72721 4.75088 4.75996 4.78121 4.92833 5.03492 5.04766 5.14787 5.18339 5.22522 5.27224 5.33650 5.44389 5.77609 5.89509 6.16739 6.30290 6.63926 6.90776 7.35683 7.56431 7.60603 8.05557 8.98026 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.002322 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.097048 B =12058.263356 C =12929.192697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.027 4.027 5 C -0.035 4.035 6 C -0.043 4.043 7 C 0.508 3.492 8 O -0.582 6.582 9 N -0.709 5.709 10 C 0.124 3.876 11 C 0.079 3.921 12 H 0.073 0.927 13 C 0.097 3.903 14 N -0.610 5.610 15 C -0.248 4.248 16 H 0.052 0.948 17 C -0.019 4.019 18 N -0.948 5.948 19 Si 0.933 3.067 20 H -0.274 1.274 21 H -0.263 1.263 22 H -0.309 1.309 23 C 0.150 3.850 24 C -0.163 4.163 25 C 0.061 3.939 26 O -0.351 6.351 27 N -0.296 5.296 28 N -0.130 5.130 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.147 0.853 34 H 0.241 0.759 35 H 0.158 0.842 36 H 0.131 0.869 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.263 0.737 43 H 0.033 0.967 44 H 0.038 0.962 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.048 0.952 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.638 -14.053 10.122 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.083 5.083 4 C -0.179 4.179 5 C -0.175 4.175 6 C -0.084 4.084 7 C 0.295 3.705 8 O -0.461 6.461 9 N -0.362 5.362 10 C -0.001 4.001 11 C 0.020 3.980 12 H 0.091 0.909 13 C -0.028 4.028 14 N -0.333 5.333 15 C -0.378 4.378 16 H 0.070 0.930 17 C -0.215 4.215 18 N -0.593 5.593 19 Si 0.762 3.238 20 H -0.201 1.201 21 H -0.187 1.187 22 H -0.238 1.238 23 C 0.023 3.977 24 C -0.203 4.203 25 C -0.017 4.017 26 O -0.269 6.269 27 N -0.161 5.161 28 N -0.109 5.109 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.164 0.836 34 H 0.258 0.742 35 H 0.175 0.825 36 H 0.149 0.851 37 H 0.254 0.746 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.067 0.933 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.540 -14.027 7.873 29.342 hybrid contribution 1.414 -0.152 0.013 1.423 sum -23.125 -14.179 7.886 28.249 Atomic orbital electron populations 1.22055 0.92536 1.04918 1.02559 1.22569 0.97148 0.74564 1.07514 1.47882 1.29996 1.12863 1.17579 1.24069 0.99089 0.94327 1.00401 1.21791 1.02925 0.96063 0.96716 1.20005 0.94508 0.97522 0.96349 1.21167 0.81169 0.78813 0.89339 1.90737 1.71529 1.61724 1.22154 1.45706 1.35384 1.40868 1.14221 1.21376 0.91408 0.94924 0.92422 1.21718 0.90453 0.87750 0.98124 0.90895 1.21488 0.93078 0.92883 0.95311 1.44220 1.07687 1.13105 1.68291 1.18693 0.85711 1.31196 1.02175 0.92986 1.25946 0.95495 0.99208 1.00859 1.69921 1.16124 1.36688 1.36564 0.86034 0.76429 0.78659 0.82718 1.20108 1.18691 1.23758 1.20512 0.95183 0.86548 0.95432 1.23451 0.99330 0.98937 0.98611 1.22581 0.97249 0.95339 0.86510 1.87629 1.45403 1.53460 1.40428 1.75046 1.09475 1.17207 1.14422 1.78195 1.22590 0.93562 1.16518 0.92146 0.93228 0.87201 0.87875 0.83550 0.74232 0.82475 0.85098 0.74603 0.92191 0.91621 0.93081 0.91728 0.92802 0.94835 0.94399 0.92267 0.89773 0.93341 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 10.04 71.98 0.72 -0.36 16 2 C 0.10 0.68 7.17 86.38 0.62 1.30 16 3 N -0.29 -5.03 3.44 -347.74 -1.20 -6.23 16 4 C -0.03 -0.39 11.49 83.49 0.96 0.57 16 5 C -0.03 -0.78 6.00 41.60 0.25 -0.53 16 6 C -0.04 -0.69 6.28 29.10 0.18 -0.51 16 7 C 0.51 13.63 7.82 87.66 0.69 14.31 16 8 O -0.58 -22.43 15.61 -3.01 -0.05 -22.48 16 9 N -0.71 -17.27 5.43 -463.07 -2.52 -19.79 16 10 C 0.12 3.89 5.24 86.38 0.45 4.34 16 11 C 0.08 2.64 2.11 28.87 0.06 2.70 16 12 H 0.07 2.46 6.77 -2.39 -0.02 2.44 16 13 C 0.10 3.99 3.45 83.95 0.29 4.28 16 14 N -0.61 -27.74 2.22 -705.05 -1.56 -29.30 16 15 C -0.25 -13.55 9.98 84.03 0.84 -12.71 16 16 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 17 C -0.02 -1.07 5.29 84.86 0.45 -0.63 16 18 N -0.95 -57.98 13.97 21.65 0.30 -57.67 16 19 Si 0.93 46.16 24.67 68.60 1.69 47.85 16 20 H -0.27 -12.94 6.70 99.48 0.67 -12.27 16 21 H -0.26 -12.66 7.01 99.48 0.70 -11.96 16 22 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 23 C 0.15 5.83 5.32 87.75 0.47 6.29 16 24 C -0.16 -4.92 6.75 32.14 0.22 -4.70 16 25 C 0.06 1.65 6.38 72.73 0.46 2.12 16 26 O -0.35 -10.68 9.54 -137.24 -1.31 -11.99 16 27 N -0.30 -9.41 11.84 -48.60 -0.58 -9.98 16 28 N -0.13 -3.64 12.91 37.02 0.48 -3.16 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.05 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 32 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.15 -0.23 8.07 -2.39 -0.02 -0.25 16 34 H 0.24 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.16 0.98 8.12 -2.39 -0.02 0.96 16 36 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.42 7.37 8.33 -92.71 -0.77 6.60 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 39 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.05 2.07 8.05 -2.39 -0.02 2.05 16 41 H 0.06 2.91 4.29 -2.39 -0.01 2.90 16 42 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.03 1.36 7.98 -2.38 -0.02 1.34 16 44 H 0.04 1.42 7.98 -2.39 -0.02 1.40 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 1.44 6.66 -2.39 -0.02 1.43 16 48 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -86.93 385.84 2.07 -84.86 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.15 Total: 11.42 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.66 Total: 16.46 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -5.07 Total: -126.14 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.36 Total: -34.46 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.69 Total: 47.85 kcal Total: -86.93 2.07 -84.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150012486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.929 kcal (2) G-P(sol) polarization free energy of solvation -86.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds