Wall clock time and date at job start Tue Mar 31 2020 20:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34953 * 126.03718 * 125.00175 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.24977 * 4 3 2 6 6 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 7 7 C 1.50703 * 125.90145 * 180.14385 * 6 5 4 8 8 C 1.50700 * 109.47162 * 125.23311 * 7 6 5 9 9 O 1.21284 * 119.99863 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00333 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00344 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47129 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47278 * 180.02562 * 12 11 10 14 14 N 1.46901 * 109.47481 * 180.02562 * 13 12 11 15 15 C 1.46898 * 111.00203 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47160 * 179.97438 * 15 14 13 17 17 O 1.21292 * 120.00070 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99836 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99568 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00069 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99555 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46906 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47153 * 119.99948 * 23 21 19 26 26 H 1.48496 * 109.47004 * 239.99932 * 23 21 19 27 27 N 1.30837 * 108.19940 * 0.36269 * 6 5 4 28 28 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47070 * 300.00086 * 1 2 3 30 30 H 1.08998 * 109.47149 * 59.99882 * 1 2 3 31 31 H 1.08999 * 109.47688 * 240.00288 * 2 1 3 32 32 H 1.08997 * 109.47597 * 120.00405 * 2 1 3 33 33 H 1.08002 * 126.12372 * 359.97438 * 4 3 2 34 34 H 1.08008 * 126.03698 * 179.76435 * 5 4 3 35 35 H 1.09000 * 109.46707 * 245.23156 * 7 6 5 36 36 H 1.09002 * 109.47068 * 5.23288 * 7 6 5 37 37 H 0.97003 * 119.99485 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.47529 * 300.00303 * 11 10 8 39 39 H 1.09002 * 109.46946 * 60.00239 * 11 10 8 40 40 H 1.08996 * 109.47628 * 299.99963 * 12 11 10 41 41 H 1.08999 * 109.47563 * 60.00274 * 12 11 10 42 42 H 1.08999 * 109.47382 * 300.00243 * 13 12 11 43 43 H 1.09001 * 109.47391 * 59.99800 * 13 12 11 44 44 H 1.00903 * 110.99973 * 56.04686 * 14 13 12 45 45 H 1.09000 * 109.47419 * 300.00138 * 15 14 13 46 46 H 1.09003 * 109.46978 * 59.99822 * 15 14 13 47 47 H 0.96992 * 119.99846 * 0.02562 * 18 16 15 48 48 H 0.97001 * 120.00199 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0673 3.2151 0.5492 6 6 2.3116 3.4728 -0.5992 7 6 2.2340 4.7889 -1.3291 8 6 2.5916 4.5815 -2.7783 9 8 2.8813 3.4740 -3.1789 10 7 2.5893 5.6266 -3.6293 11 6 2.9374 5.4250 -5.0379 12 6 2.8585 6.7612 -5.7790 13 6 3.2214 6.5506 -7.2504 14 7 3.1462 7.8336 -7.9618 15 6 3.4886 7.6695 -9.3809 16 6 3.4000 9.0035 -10.0765 17 8 3.0834 9.9936 -9.4515 18 7 3.6737 9.0965 -11.3929 19 6 3.5937 10.3102 -12.0256 20 1 3.3118 11.1917 -11.4690 21 6 3.8753 10.4060 -13.3828 22 7 4.2179 9.3332 -14.0602 23 14 3.7670 12.0597 -14.2447 24 1 3.3631 13.1019 -13.2670 25 1 5.0917 12.4061 -14.8194 26 1 2.7594 11.9856 -15.3330 27 7 1.6801 2.3750 -0.9275 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3185 1.4127 1.7363 34 1 3.6964 3.9234 1.0680 35 1 1.2209 5.1846 -1.2579 36 1 2.9324 5.4952 -0.8801 37 1 2.3579 6.5124 -3.3088 38 1 3.9507 5.0299 -5.1089 39 1 2.2396 4.7182 -5.4871 40 1 1.8453 7.1567 -5.7082 41 1 3.5565 7.4676 -5.3299 42 1 4.2345 6.1548 -7.3217 43 1 2.5231 5.8443 -7.6994 44 1 3.7372 8.5247 -7.5245 45 1 4.5032 7.2809 -9.4674 46 1 2.7914 6.9715 -9.8445 47 1 3.9273 8.3048 -11.8927 48 1 4.4148 9.4002 -15.0076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158437512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:15 Heat of formation + Delta-G solvation = -3.332532 kcal Electronic energy + Delta-G solvation = -26787.558444 eV Core-core repulsion = 22685.941473 eV Total energy + Delta-G solvation = -4101.616971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53248 -39.70214 -38.30126 -36.53409 -35.10771 -34.74884 -33.82660 -32.25770 -31.34102 -31.03293 -30.03791 -28.55462 -26.92818 -24.83450 -23.76640 -23.04037 -21.67738 -21.45992 -20.98096 -19.71262 -19.18774 -17.87344 -17.43357 -17.16034 -16.43047 -16.20502 -15.82104 -15.66424 -15.48314 -14.81941 -14.68571 -14.48575 -14.39411 -14.13430 -13.85112 -13.65994 -13.44210 -13.38394 -13.21450 -12.83290 -12.73380 -12.50110 -12.33466 -12.00419 -11.80536 -11.78654 -11.73944 -11.45171 -11.39856 -11.07998 -10.91247 -10.79355 -10.33377 -10.21485 -10.04802 -9.51217 -9.50931 -9.24776 -8.84722 -8.45589 -8.05408 -7.94678 -6.40602 -3.81454 1.62821 2.16515 2.40548 2.49962 3.06217 3.17332 3.27834 3.35173 3.92223 3.99575 4.10735 4.32915 4.36834 4.41025 4.51182 4.65028 4.73187 4.79603 4.86476 5.02124 5.04875 5.09498 5.10989 5.20546 5.24184 5.27703 5.37061 5.47003 5.48593 5.55317 5.62873 5.66902 5.73726 5.81637 5.99443 6.02688 6.07474 6.25049 6.28571 6.33249 6.72149 7.21513 7.28958 7.47721 7.56503 7.66806 8.06342 8.07807 8.62529 9.19090 9.55691 10.07043 10.77231 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039643 B = 0.001214 C = 0.001194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.127057 B =23067.203503 C =23436.032725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.372 5.372 4 C 0.049 3.951 5 C -0.267 4.267 6 C 0.080 3.920 7 C -0.059 4.059 8 C 0.513 3.487 9 O -0.524 6.524 10 N -0.732 5.732 11 C 0.122 3.878 12 C -0.128 4.128 13 C 0.062 3.938 14 N -0.670 5.670 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 N -0.260 5.260 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.401 0.599 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.029 0.971 43 H 0.074 0.926 44 H 0.349 0.651 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 -17.554 31.191 35.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.155 5.155 4 C -0.097 4.097 5 C -0.297 4.297 6 C -0.088 4.088 7 C -0.100 4.100 8 C 0.298 3.702 9 O -0.399 6.399 10 N -0.385 5.385 11 C -0.002 4.002 12 C -0.167 4.167 13 C -0.068 4.068 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 N -0.082 5.082 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.189 0.811 34 H 0.164 0.836 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.168 0.832 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.226 0.774 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.416 -18.490 30.178 35.666 hybrid contribution 1.649 0.847 -0.063 1.854 sum -2.767 -17.643 30.115 35.012 Atomic orbital electron populations 1.22049 0.93739 1.02880 1.03622 1.21681 0.96148 0.77527 1.03715 1.48751 1.35592 1.10194 1.20990 1.22508 0.95972 0.94826 0.96383 1.21326 1.09812 0.96794 1.01724 1.21496 0.97606 0.94169 0.95493 1.20015 1.04940 0.93438 0.91642 1.20389 0.77542 0.84615 0.87643 1.90757 1.46791 1.23958 1.78372 1.45975 1.71328 1.11269 1.09908 1.21293 1.01121 0.97765 0.80015 1.21738 1.03641 0.96187 0.95103 1.21831 0.99589 0.92475 0.92901 1.60045 1.60625 1.07960 1.01562 1.21672 0.99540 0.97626 0.89383 1.19821 0.84501 0.89834 0.83223 1.90517 1.52671 1.38121 1.65496 1.41872 1.60078 1.10977 1.07135 1.19763 1.43515 0.87675 0.91930 0.87855 1.25262 0.97143 0.98984 0.96552 1.69622 1.46799 1.28475 1.09421 0.85800 0.77764 0.81653 0.79131 1.19199 1.20783 1.20748 1.77384 1.23067 0.96272 1.11446 0.90700 0.92161 0.90963 0.89735 0.88738 0.81110 0.83556 0.87230 0.86903 0.76437 0.91598 0.91328 0.90114 0.91251 0.95287 0.90798 0.83202 0.93823 0.89551 0.77444 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.10 37.16 0.38 -0.50 16 2 C 0.13 0.73 7.23 -4.04 -0.03 0.70 16 3 N -0.37 -3.40 3.68 -61.37 -0.23 -3.63 16 4 C 0.05 0.36 11.45 -17.22 -0.20 0.16 16 5 C -0.27 -2.21 10.72 -40.02 -0.43 -2.64 16 6 C 0.08 0.82 6.01 -82.41 -0.50 0.32 16 7 C -0.06 -0.43 6.28 -29.03 -0.18 -0.61 16 8 C 0.51 5.44 7.82 -10.99 -0.09 5.35 16 9 O -0.52 -8.07 15.56 5.55 0.09 -7.98 16 10 N -0.73 -6.12 5.56 -60.30 -0.33 -6.46 16 11 C 0.12 1.18 5.67 -4.05 -0.02 1.16 16 12 C -0.13 -1.23 5.59 -26.73 -0.15 -1.38 16 13 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 14 N -0.67 -10.72 6.12 -115.06 -0.70 -11.42 16 15 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 16 C 0.44 10.51 7.82 -10.98 -0.09 10.43 16 17 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 18 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 19 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 23 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 N -0.26 -3.16 11.77 33.67 0.40 -2.76 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.24 8.07 -51.93 -0.42 -0.18 16 33 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.40 2.16 8.47 -40.82 -0.35 1.82 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.35 5.68 8.43 -39.29 -0.33 5.35 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 411.82 15.07 6.21 6.21 Total: -1.00 -37.95 411.82 -8.13 -46.09 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -7.69 Total: 11.66 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -1.60 Total: 6.52 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.20 Total: -62.73 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.95 -8.13 -46.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158437512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.754 kcal (2) G-P(sol) polarization free energy of solvation -37.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds