Wall clock time and date at job start Tue Mar 31 2020 20:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34953 * 126.03718 * 125.00175 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.24977 * 4 3 2 6 6 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 7 7 C 1.50703 * 125.90145 * 180.14385 * 6 5 4 8 8 C 1.50700 * 109.47162 * 125.23311 * 7 6 5 9 9 O 1.21284 * 119.99863 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00333 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00344 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47129 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47278 * 180.02562 * 12 11 10 14 14 N 1.46901 * 109.47481 * 180.02562 * 13 12 11 15 15 C 1.46898 * 111.00203 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47160 * 179.97438 * 15 14 13 17 17 O 1.21292 * 120.00070 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99836 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99568 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00069 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99555 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46906 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47153 * 119.99948 * 23 21 19 26 26 H 1.48496 * 109.47004 * 239.99932 * 23 21 19 27 27 N 1.30837 * 108.19940 * 0.36269 * 6 5 4 28 28 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47070 * 300.00086 * 1 2 3 30 30 H 1.08998 * 109.47149 * 59.99882 * 1 2 3 31 31 H 1.08999 * 109.47688 * 240.00288 * 2 1 3 32 32 H 1.08997 * 109.47597 * 120.00405 * 2 1 3 33 33 H 1.08002 * 126.12372 * 359.97438 * 4 3 2 34 34 H 1.08008 * 126.03698 * 179.76435 * 5 4 3 35 35 H 1.09000 * 109.46707 * 245.23156 * 7 6 5 36 36 H 1.09002 * 109.47068 * 5.23288 * 7 6 5 37 37 H 0.97003 * 119.99485 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.47529 * 300.00303 * 11 10 8 39 39 H 1.09002 * 109.46946 * 60.00239 * 11 10 8 40 40 H 1.08996 * 109.47628 * 299.99963 * 12 11 10 41 41 H 1.08999 * 109.47563 * 60.00274 * 12 11 10 42 42 H 1.08999 * 109.47382 * 300.00243 * 13 12 11 43 43 H 1.09001 * 109.47391 * 59.99800 * 13 12 11 44 44 H 1.00903 * 110.99973 * 56.04686 * 14 13 12 45 45 H 1.09000 * 109.47419 * 300.00138 * 15 14 13 46 46 H 1.09003 * 109.46978 * 59.99822 * 15 14 13 47 47 H 0.96992 * 119.99846 * 0.02562 * 18 16 15 48 48 H 0.97001 * 120.00199 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0673 3.2151 0.5492 6 6 2.3116 3.4728 -0.5992 7 6 2.2340 4.7889 -1.3291 8 6 2.5916 4.5815 -2.7783 9 8 2.8813 3.4740 -3.1789 10 7 2.5893 5.6266 -3.6293 11 6 2.9374 5.4250 -5.0379 12 6 2.8585 6.7612 -5.7790 13 6 3.2214 6.5506 -7.2504 14 7 3.1462 7.8336 -7.9618 15 6 3.4886 7.6695 -9.3809 16 6 3.4000 9.0035 -10.0765 17 8 3.0834 9.9936 -9.4515 18 7 3.6737 9.0965 -11.3929 19 6 3.5937 10.3102 -12.0256 20 1 3.3118 11.1917 -11.4690 21 6 3.8753 10.4060 -13.3828 22 7 4.2179 9.3332 -14.0602 23 14 3.7670 12.0597 -14.2447 24 1 3.3631 13.1019 -13.2670 25 1 5.0917 12.4061 -14.8194 26 1 2.7594 11.9856 -15.3330 27 7 1.6801 2.3750 -0.9275 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3185 1.4127 1.7363 34 1 3.6964 3.9234 1.0680 35 1 1.2209 5.1846 -1.2579 36 1 2.9324 5.4952 -0.8801 37 1 2.3579 6.5124 -3.3088 38 1 3.9507 5.0299 -5.1089 39 1 2.2396 4.7182 -5.4871 40 1 1.8453 7.1567 -5.7082 41 1 3.5565 7.4676 -5.3299 42 1 4.2345 6.1548 -7.3217 43 1 2.5231 5.8443 -7.6994 44 1 3.7372 8.5247 -7.5245 45 1 4.5032 7.2809 -9.4674 46 1 2.7914 6.9715 -9.8445 47 1 3.9273 8.3048 -11.8927 48 1 4.4148 9.4002 -15.0076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158437512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:14 Heat of formation + Delta-G solvation = -33.730398 kcal Electronic energy + Delta-G solvation = -26788.876594 eV Core-core repulsion = 22685.941473 eV Total energy + Delta-G solvation = -4102.935121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.12182 -40.52568 -40.14720 -37.64033 -36.11256 -35.66634 -35.50234 -33.30557 -32.94632 -32.00816 -30.66278 -29.27502 -28.28013 -26.41276 -24.70633 -23.93235 -22.56826 -21.99997 -21.75144 -21.07114 -20.34299 -19.89583 -18.00406 -17.97379 -17.75867 -17.25656 -16.89702 -16.64233 -16.44534 -16.21527 -15.94402 -15.66399 -15.28445 -15.16408 -15.05606 -14.63966 -14.53164 -14.27866 -14.19977 -13.71566 -13.52710 -13.36470 -13.29892 -13.16741 -12.95159 -12.88811 -12.78712 -12.64906 -12.41062 -12.39594 -12.23193 -12.10383 -11.82930 -11.51154 -11.41772 -10.91131 -10.35337 -10.16888 -10.05262 -10.01610 -9.42413 -9.33436 -8.46686 -5.95659 1.04665 1.37186 1.42546 1.56941 1.67636 1.71123 1.80168 2.04823 2.28167 2.36340 2.96275 3.20712 3.51096 3.53283 3.87161 3.93049 4.02427 4.06521 4.11322 4.17222 4.25248 4.33493 4.34612 4.36024 4.48637 4.55322 4.58531 4.59208 4.69331 4.72129 4.79113 4.81253 4.89787 4.96473 5.14491 5.18152 5.22414 5.24026 5.41332 5.49013 5.76176 5.88513 6.09738 6.25169 6.42107 6.59880 6.61938 6.86841 7.12490 7.33092 7.55996 8.10961 8.70970 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039643 B = 0.001214 C = 0.001194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.127057 B =23067.203503 C =23436.032725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 N -0.382 5.382 4 C 0.051 3.949 5 C -0.284 4.284 6 C 0.061 3.939 7 C -0.054 4.054 8 C 0.510 3.490 9 O -0.579 6.579 10 N -0.718 5.718 11 C 0.129 3.871 12 C -0.113 4.113 13 C 0.062 3.938 14 N -0.683 5.683 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.271 1.271 27 N -0.316 5.316 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.211 0.789 34 H 0.169 0.831 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.418 0.582 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.076 0.924 44 H 0.346 0.654 45 H 0.067 0.933 46 H 0.102 0.898 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 -17.708 32.705 37.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 N -0.165 5.165 4 C -0.095 4.095 5 C -0.313 4.313 6 C -0.106 4.106 7 C -0.095 4.095 8 C 0.297 3.703 9 O -0.458 6.458 10 N -0.372 5.372 11 C 0.004 3.996 12 C -0.152 4.152 13 C -0.067 4.067 14 N -0.315 5.315 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.098 0.902 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.197 1.197 27 N -0.139 5.139 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.150 0.850 33 H 0.228 0.772 34 H 0.187 0.813 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.256 0.744 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.165 0.835 45 H 0.084 0.916 46 H 0.120 0.880 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.909 -18.639 31.698 36.979 hybrid contribution 1.485 0.835 -0.475 1.769 sum -2.424 -17.805 31.222 36.024 Atomic orbital electron populations 1.21983 0.93796 1.03815 1.01970 1.21974 0.96203 0.76502 1.05136 1.49054 1.35921 1.10739 1.20810 1.23212 0.94789 0.94880 0.96586 1.21724 1.10182 0.97855 1.01547 1.22037 0.97601 0.94633 0.96317 1.20157 1.06930 0.93246 0.89153 1.20985 0.76393 0.83954 0.88991 1.90732 1.49449 1.26127 1.79478 1.45860 1.70312 1.11837 1.09182 1.21115 1.00317 0.97408 0.80738 1.21574 1.03841 0.96151 0.93592 1.21907 1.00401 0.90605 0.93793 1.60044 1.60812 1.09850 1.00802 1.21536 1.01388 0.93867 0.90068 1.20881 0.82376 0.91664 0.82615 1.90484 1.53930 1.40299 1.66195 1.41944 1.60726 1.10428 1.07950 1.19729 1.45716 0.88136 0.92839 0.90232 1.26048 0.96078 1.02531 0.96568 1.69681 1.46550 1.30025 1.09947 0.84861 0.78311 0.77252 0.77854 1.19674 1.19561 1.19672 1.77296 1.25211 0.97769 1.13646 0.88433 0.92297 0.93987 0.90567 0.84990 0.77241 0.81320 0.85333 0.83431 0.74447 0.92353 0.92714 0.90194 0.90077 0.94179 0.90589 0.83509 0.91553 0.87955 0.76987 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 10.10 71.98 0.73 -0.94 16 2 C 0.12 1.29 7.23 86.38 0.62 1.92 16 3 N -0.38 -6.83 3.68 -348.06 -1.28 -8.12 16 4 C 0.05 0.67 11.45 83.54 0.96 1.62 16 5 C -0.28 -4.30 10.72 21.99 0.24 -4.06 16 6 C 0.06 1.22 6.01 43.10 0.26 1.48 16 7 C -0.05 -0.73 6.28 29.10 0.18 -0.54 16 8 C 0.51 10.62 7.82 87.66 0.69 11.31 16 9 O -0.58 -18.41 15.56 -3.04 -0.05 -18.46 16 10 N -0.72 -11.20 5.56 -463.08 -2.57 -13.77 16 11 C 0.13 2.39 5.67 86.38 0.49 2.88 16 12 C -0.11 -1.99 5.59 30.59 0.17 -1.82 16 13 C 0.06 1.39 5.69 86.30 0.49 1.88 16 14 N -0.68 -21.00 6.12 -517.92 -3.17 -24.17 16 15 C 0.06 2.20 6.17 85.56 0.53 2.73 16 16 C 0.44 20.96 7.82 87.66 0.69 21.64 16 17 O -0.62 -34.60 15.78 -3.07 -0.05 -34.65 16 18 N -0.57 -29.69 5.29 -306.98 -1.62 -31.31 16 19 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 20 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 23 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 N -0.32 -7.91 11.77 -47.39 -0.56 -8.47 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.13 0.34 8.07 -2.39 -0.02 0.32 16 33 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.15 0.87 8.12 -2.39 -0.02 0.85 16 37 H 0.42 3.65 8.47 -92.71 -0.79 2.86 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.35 10.93 8.43 -89.69 -0.76 10.18 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 47 H 0.40 19.51 7.90 -92.71 -0.73 18.77 16 48 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -85.39 411.82 -0.96 -86.34 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -1.28 Total: 37.71 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 7.32 Total: 19.55 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -8.92 Total: -135.58 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -0.10 Total: -53.11 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -85.39 -0.96 -86.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158437512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.614 kcal (2) G-P(sol) polarization free energy of solvation -85.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds