Wall clock time and date at job start Tue Mar 31 2020 20:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46851 * 2 1 4 4 N 1.28444 * 125.19326 * 85.73619 * 3 2 1 5 5 C 1.30866 * 110.92516 * 179.97438 * 4 3 2 6 6 C 1.50708 * 126.06492 * 179.97438 * 5 4 3 7 7 C 1.39672 * 107.86606 * 359.97438 * 5 4 3 8 8 C 1.36608 * 125.18815 * 265.70504 * 3 2 1 9 9 C 1.47164 * 126.88483 * 0.04711 * 8 3 2 10 10 O 1.21629 * 119.99879 * 5.54074 * 9 8 3 11 11 N 1.34767 * 119.99843 * 185.54546 * 9 8 3 12 12 C 1.46502 * 120.00030 * 185.12340 * 11 9 8 13 13 C 1.53000 * 109.47388 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47255 * 180.02562 * 13 12 11 15 15 N 1.46894 * 109.47190 * 180.02562 * 14 13 12 16 16 C 1.46900 * 111.00144 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47341 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00244 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00128 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00132 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99942 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00095 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00122 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00070 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47372 * 89.99876 * 24 22 20 26 26 H 1.48498 * 109.47382 * 209.99992 * 24 22 20 27 27 H 1.48505 * 109.46958 * 329.99700 * 24 22 20 28 28 H 1.08998 * 109.46911 * 300.00167 * 1 2 3 29 29 H 1.09003 * 109.46584 * 59.99998 * 1 2 3 30 30 H 1.08995 * 109.46679 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46911 * 239.99833 * 2 1 3 32 32 H 1.08998 * 109.46874 * 119.99604 * 2 1 3 33 33 H 1.09003 * 109.47011 * 90.02298 * 6 5 4 34 34 H 1.08999 * 109.46682 * 210.01799 * 6 5 4 35 35 H 1.09005 * 109.46886 * 330.01979 * 6 5 4 36 36 H 1.08000 * 127.31721 * 180.02562 * 7 5 4 37 37 H 0.96997 * 120.00536 * 5.12944 * 11 9 8 38 38 H 1.08993 * 109.47412 * 300.00342 * 12 11 9 39 39 H 1.09005 * 109.46605 * 59.99773 * 12 11 9 40 40 H 1.09001 * 109.47075 * 300.00273 * 13 12 11 41 41 H 1.08992 * 109.47014 * 60.00389 * 13 12 11 42 42 H 1.09001 * 109.46933 * 299.99909 * 14 13 12 43 43 H 1.08996 * 109.47163 * 59.99521 * 14 13 12 44 44 H 1.00905 * 111.00066 * 56.04559 * 15 14 13 45 45 H 1.09006 * 109.47035 * 299.99989 * 16 15 14 46 46 H 1.08999 * 109.47251 * 60.00144 * 16 15 14 47 47 H 0.97002 * 119.99960 * 359.97438 * 19 17 16 48 48 H 0.97006 * 120.00505 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1915 2.1052 1.0468 5 6 2.6373 3.2928 0.7252 6 6 2.9562 4.4105 1.6845 7 6 2.7652 3.3406 -0.6649 8 6 2.3595 2.0956 -1.1133 9 6 2.3065 1.6339 -2.5096 10 8 1.8333 0.5447 -2.7725 11 7 2.7824 2.4179 -3.4971 12 6 2.6286 2.0091 -4.8955 13 6 3.2501 3.0685 -5.8079 14 6 3.0889 2.6418 -7.2683 15 7 3.6862 3.6586 -8.1442 16 6 3.5504 3.2815 -9.5575 17 6 4.1737 4.3457 -10.4235 18 8 4.6816 5.3220 -9.9137 19 7 4.1668 4.2126 -11.7647 20 6 4.7343 5.1804 -12.5526 21 1 5.1865 6.0498 -12.0985 22 6 4.7277 5.0430 -13.9352 23 7 5.2712 5.9709 -14.6904 24 14 3.9449 3.5397 -14.7206 25 1 2.5101 3.8122 -14.9896 26 1 4.6377 3.2306 -15.9972 27 1 4.0645 2.3810 -13.7995 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9993 4.3384 1.9925 34 1 2.7876 5.3693 1.1941 35 1 2.3123 4.3322 2.5605 36 1 3.1076 4.1723 -1.2627 37 1 3.2269 3.2528 -3.2820 38 1 3.1305 1.0544 -5.0523 39 1 1.5690 1.9052 -5.1292 40 1 2.7478 4.0230 -5.6510 41 1 4.3096 3.1727 -5.5743 42 1 3.5910 1.6872 -7.4255 43 1 2.0293 2.5378 -7.5016 44 1 4.6530 3.8196 -7.9046 45 1 4.0555 2.3311 -9.7301 46 1 2.4940 3.1821 -9.8072 47 1 3.7609 3.4316 -12.1725 48 1 5.2669 5.8748 -15.6557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167264664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:17 Heat of formation + Delta-G solvation = 0.107470 kcal Electronic energy + Delta-G solvation = -27398.360694 eV Core-core repulsion = 23296.892893 eV Total energy + Delta-G solvation = -4101.467801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.96927 -39.81373 -38.53072 -36.74744 -35.50109 -34.83624 -33.92526 -32.24658 -31.70903 -31.63941 -30.73213 -27.86741 -27.41049 -25.22062 -24.05820 -23.37635 -22.65577 -21.87467 -21.30687 -19.86439 -19.37231 -18.37663 -18.06367 -16.80286 -16.67195 -16.23162 -16.14395 -15.74544 -15.42370 -15.05551 -14.92726 -14.68462 -14.39461 -14.21483 -14.10344 -13.66554 -13.59374 -13.31031 -13.23414 -12.97039 -12.81332 -12.68151 -12.44873 -12.38795 -12.20505 -11.98790 -11.79712 -11.71306 -11.57808 -11.21983 -11.07425 -11.06196 -10.60980 -10.46119 -9.99191 -9.68494 -9.59049 -9.38709 -9.26036 -8.62937 -8.22725 -8.17881 -6.32672 -3.84264 0.84193 1.92847 2.14627 2.74448 2.78860 3.01141 3.05864 3.14050 3.71806 3.99856 4.01683 4.09027 4.11812 4.49502 4.52533 4.63551 4.68847 4.73100 4.81834 4.91544 4.95067 4.98490 5.14395 5.18737 5.20082 5.26036 5.26946 5.28426 5.37032 5.45462 5.49662 5.59450 5.60449 5.62900 5.77467 5.82443 5.88862 5.92320 5.99980 6.11113 6.36043 6.95738 7.02694 7.51310 7.56518 7.62048 7.72883 8.12719 8.57952 8.93228 9.40699 9.80667 10.80386 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.001447 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.997484 B =19342.317834 C =20294.609072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.253 5.253 4 N -0.275 5.275 5 C 0.022 3.978 6 C -0.067 4.067 7 C -0.186 4.186 8 C -0.038 4.038 9 C 0.591 3.409 10 O -0.540 6.540 11 N -0.712 5.712 12 C 0.123 3.877 13 C -0.131 4.131 14 C 0.063 3.937 15 N -0.669 5.669 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.161 0.839 37 H 0.406 0.594 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.351 0.649 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.371 0.629 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 -12.138 30.186 33.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.041 5.041 4 N -0.109 5.109 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.215 4.215 8 C -0.166 4.166 9 C 0.377 3.623 10 O -0.417 6.417 11 N -0.364 5.364 12 C -0.001 4.001 13 C -0.169 4.169 14 C -0.067 4.067 15 N -0.302 5.302 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.179 0.821 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.170 0.830 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.725 -12.593 30.988 34.568 hybrid contribution 0.482 -1.009 -1.567 1.925 sum -8.243 -13.602 29.421 33.445 Atomic orbital electron populations 1.22074 0.93309 1.03583 1.03116 1.22220 0.96393 0.76372 1.05814 1.45798 1.44205 1.12324 1.01745 1.73136 1.19303 1.04796 1.13708 1.22037 1.03653 0.93837 0.93871 1.20106 1.02136 0.93451 0.96902 1.22147 1.07358 0.96888 0.95112 1.21370 1.11135 0.94258 0.89855 1.16897 0.78134 0.84208 0.83094 1.90791 1.46302 1.20702 1.83938 1.45668 1.59535 1.24930 1.06222 1.21399 1.01784 0.98409 0.78489 1.21754 1.01885 0.99158 0.94086 1.21819 1.00585 0.92955 0.91366 1.60040 1.24530 1.44121 1.01492 1.21705 1.01605 0.96337 0.88832 1.19704 0.85397 0.88829 0.82585 1.90563 1.48840 1.32324 1.72989 1.42207 1.53520 1.21669 1.05559 1.19437 1.33994 1.02007 0.88048 0.86273 1.25038 0.97522 0.97617 0.95942 1.69619 1.43718 1.33351 1.05388 0.86667 0.80176 0.82564 0.79937 1.19581 1.20180 1.19537 0.91817 0.91603 0.90007 0.86465 0.88492 0.90743 0.90391 0.91000 0.82120 0.75884 0.90998 0.90879 0.89859 0.91004 0.95160 0.90694 0.82968 0.93692 0.89397 0.79670 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 10.24 37.16 0.38 -0.71 16 2 C 0.11 0.85 6.58 -4.04 -0.03 0.82 16 3 N -0.25 -2.47 3.35 -57.13 -0.19 -2.66 16 4 N -0.28 -2.82 11.90 33.64 0.40 -2.42 16 5 C 0.02 0.19 7.22 -82.46 -0.60 -0.41 16 6 C -0.07 -0.36 10.45 36.01 0.38 0.01 16 7 C -0.19 -1.47 10.43 -38.98 -0.41 -1.88 16 8 C -0.04 -0.36 6.96 -82.05 -0.57 -0.93 16 9 C 0.59 5.82 7.78 -12.64 -0.10 5.72 16 10 O -0.54 -6.57 14.68 5.25 0.08 -6.50 16 11 N -0.71 -5.37 5.53 -61.47 -0.34 -5.71 16 12 C 0.12 0.95 5.68 -4.04 -0.02 0.93 16 13 C -0.13 -1.04 5.59 -26.73 -0.15 -1.19 16 14 C 0.06 0.64 5.69 -3.83 -0.02 0.61 16 15 N -0.67 -9.64 6.13 -115.06 -0.71 -10.35 16 16 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 17 C 0.45 10.03 7.82 -10.99 -0.09 9.94 16 18 O -0.57 -14.97 15.78 5.55 0.09 -14.89 16 19 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 20 C -0.31 -8.61 10.16 -14.93 -0.15 -8.77 16 21 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 24 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.12 0.96 6.20 -51.93 -0.32 0.64 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.16 0.79 7.62 -52.49 -0.40 0.39 16 37 H 0.41 2.19 7.55 -40.82 -0.31 1.88 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.35 5.21 8.43 -39.29 -0.33 4.87 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 48 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 404.54 15.07 6.10 6.10 Total: -1.00 -35.67 404.54 -7.57 -43.23 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -7.49 Total: 11.56 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.50 Total: 5.94 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.12 Total: -59.92 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.16 Total: -21.38 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.67 -7.57 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167264664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.340 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds