Wall clock time and date at job start Tue Mar 31 2020 20:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46851 * 2 1 4 4 N 1.28444 * 125.19326 * 85.73619 * 3 2 1 5 5 C 1.30866 * 110.92516 * 179.97438 * 4 3 2 6 6 C 1.50708 * 126.06492 * 179.97438 * 5 4 3 7 7 C 1.39672 * 107.86606 * 359.97438 * 5 4 3 8 8 C 1.36608 * 125.18815 * 265.70504 * 3 2 1 9 9 C 1.47164 * 126.88483 * 0.04711 * 8 3 2 10 10 O 1.21629 * 119.99879 * 5.54074 * 9 8 3 11 11 N 1.34767 * 119.99843 * 185.54546 * 9 8 3 12 12 C 1.46502 * 120.00030 * 185.12340 * 11 9 8 13 13 C 1.53000 * 109.47388 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47255 * 180.02562 * 13 12 11 15 15 N 1.46894 * 109.47190 * 180.02562 * 14 13 12 16 16 C 1.46900 * 111.00144 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47341 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00244 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00128 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00132 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99942 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00095 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00122 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00070 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47372 * 89.99876 * 24 22 20 26 26 H 1.48498 * 109.47382 * 209.99992 * 24 22 20 27 27 H 1.48505 * 109.46958 * 329.99700 * 24 22 20 28 28 H 1.08998 * 109.46911 * 300.00167 * 1 2 3 29 29 H 1.09003 * 109.46584 * 59.99998 * 1 2 3 30 30 H 1.08995 * 109.46679 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46911 * 239.99833 * 2 1 3 32 32 H 1.08998 * 109.46874 * 119.99604 * 2 1 3 33 33 H 1.09003 * 109.47011 * 90.02298 * 6 5 4 34 34 H 1.08999 * 109.46682 * 210.01799 * 6 5 4 35 35 H 1.09005 * 109.46886 * 330.01979 * 6 5 4 36 36 H 1.08000 * 127.31721 * 180.02562 * 7 5 4 37 37 H 0.96997 * 120.00536 * 5.12944 * 11 9 8 38 38 H 1.08993 * 109.47412 * 300.00342 * 12 11 9 39 39 H 1.09005 * 109.46605 * 59.99773 * 12 11 9 40 40 H 1.09001 * 109.47075 * 300.00273 * 13 12 11 41 41 H 1.08992 * 109.47014 * 60.00389 * 13 12 11 42 42 H 1.09001 * 109.46933 * 299.99909 * 14 13 12 43 43 H 1.08996 * 109.47163 * 59.99521 * 14 13 12 44 44 H 1.00905 * 111.00066 * 56.04559 * 15 14 13 45 45 H 1.09006 * 109.47035 * 299.99989 * 16 15 14 46 46 H 1.08999 * 109.47251 * 60.00144 * 16 15 14 47 47 H 0.97002 * 119.99960 * 359.97438 * 19 17 16 48 48 H 0.97006 * 120.00505 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1915 2.1052 1.0468 5 6 2.6373 3.2928 0.7252 6 6 2.9562 4.4105 1.6845 7 6 2.7652 3.3406 -0.6649 8 6 2.3595 2.0956 -1.1133 9 6 2.3065 1.6339 -2.5096 10 8 1.8333 0.5447 -2.7725 11 7 2.7824 2.4179 -3.4971 12 6 2.6286 2.0091 -4.8955 13 6 3.2501 3.0685 -5.8079 14 6 3.0889 2.6418 -7.2683 15 7 3.6862 3.6586 -8.1442 16 6 3.5504 3.2815 -9.5575 17 6 4.1737 4.3457 -10.4235 18 8 4.6816 5.3220 -9.9137 19 7 4.1668 4.2126 -11.7647 20 6 4.7343 5.1804 -12.5526 21 1 5.1865 6.0498 -12.0985 22 6 4.7277 5.0430 -13.9352 23 7 5.2712 5.9709 -14.6904 24 14 3.9449 3.5397 -14.7206 25 1 2.5101 3.8122 -14.9896 26 1 4.6377 3.2306 -15.9972 27 1 4.0645 2.3810 -13.7995 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9993 4.3384 1.9925 34 1 2.7876 5.3693 1.1941 35 1 2.3123 4.3322 2.5605 36 1 3.1076 4.1723 -1.2627 37 1 3.2269 3.2528 -3.2820 38 1 3.1305 1.0544 -5.0523 39 1 1.5690 1.9052 -5.1292 40 1 2.7478 4.0230 -5.6510 41 1 4.3096 3.1727 -5.5743 42 1 3.5910 1.6872 -7.4255 43 1 2.0293 2.5378 -7.5016 44 1 4.6530 3.8196 -7.9046 45 1 4.0555 2.3311 -9.7301 46 1 2.4940 3.1821 -9.8072 47 1 3.7609 3.4316 -12.1725 48 1 5.2669 5.8748 -15.6557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167264664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:16 Heat of formation + Delta-G solvation = -28.835353 kcal Electronic energy + Delta-G solvation = -27399.615749 eV Core-core repulsion = 23296.892893 eV Total energy + Delta-G solvation = -4102.722856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.60708 -40.55199 -40.27672 -37.67730 -36.32640 -35.91471 -35.49627 -33.75144 -33.00846 -32.21840 -31.51280 -28.71395 -28.38319 -26.55497 -25.08396 -24.28080 -23.40193 -22.60545 -21.96516 -21.27881 -20.55189 -20.18300 -18.73604 -17.84786 -17.45336 -17.32751 -17.05300 -16.76292 -16.61999 -16.29756 -15.73324 -15.63573 -15.43231 -15.38655 -14.88596 -14.76036 -14.63686 -14.39860 -14.15974 -14.08833 -13.84684 -13.44031 -13.27215 -13.23645 -13.15873 -12.97128 -12.88319 -12.68857 -12.43031 -12.39835 -12.29864 -11.97056 -11.83016 -11.69536 -11.50468 -11.22012 -10.43276 -10.39297 -10.24039 -10.03290 -9.86363 -9.30990 -8.40637 -6.01644 0.16531 1.31139 1.32312 1.36779 1.45486 1.52321 1.96705 2.07678 2.10790 2.23835 2.76341 3.15871 3.41749 3.45347 3.49465 3.94503 3.97187 4.01600 4.08476 4.14610 4.19036 4.22858 4.26874 4.39570 4.46105 4.57935 4.59332 4.62044 4.68162 4.72238 4.73940 4.80148 4.89562 5.02861 5.05971 5.13808 5.16670 5.21375 5.34905 5.53418 5.56840 5.75748 5.91517 6.06206 6.33106 6.42216 6.60539 6.88855 6.96589 7.07153 7.40727 7.97282 8.76945 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.001447 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.997484 B =19342.317834 C =20294.609072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.264 5.264 4 N -0.300 5.300 5 C 0.011 3.989 6 C -0.066 4.066 7 C -0.180 4.180 8 C -0.056 4.056 9 C 0.590 3.410 10 O -0.569 6.569 11 N -0.700 5.700 12 C 0.130 3.870 13 C -0.119 4.119 14 C 0.064 3.936 15 N -0.688 5.688 16 C 0.062 3.938 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.258 1.258 26 H -0.276 1.276 27 H -0.230 1.230 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.190 0.810 37 H 0.417 0.583 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.345 0.655 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.082 -14.478 30.703 35.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 N -0.052 5.052 4 N -0.134 5.134 5 C -0.145 4.145 6 C -0.124 4.124 7 C -0.209 4.209 8 C -0.185 4.185 9 C 0.376 3.624 10 O -0.449 6.449 11 N -0.352 5.352 12 C 0.006 3.994 13 C -0.157 4.157 14 C -0.065 4.065 15 N -0.321 5.321 16 C -0.071 4.071 17 C 0.235 3.765 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.460 4.460 21 H 0.073 0.927 22 C -0.213 4.213 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.182 1.182 26 H -0.201 1.201 27 H -0.154 1.154 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.207 0.793 37 H 0.255 0.745 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.164 0.836 45 H 0.095 0.905 46 H 0.132 0.868 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.959 -14.935 31.534 36.285 hybrid contribution 0.923 -0.152 -1.622 1.873 sum -9.036 -15.087 29.912 34.698 Atomic orbital electron populations 1.22012 0.92764 1.04554 1.01892 1.22324 0.96833 0.75954 1.06065 1.46005 1.44533 1.12847 1.01770 1.73114 1.20274 1.05720 1.14309 1.22637 1.02976 0.94003 0.94880 1.20221 1.02641 0.93144 0.96424 1.22544 1.06207 0.96987 0.95149 1.21540 1.12103 0.95091 0.89752 1.17003 0.77885 0.83990 0.83538 1.90771 1.47776 1.21961 1.84357 1.45578 1.58787 1.25014 1.05826 1.21303 1.01559 0.98181 0.78364 1.21612 1.02243 0.98882 0.92950 1.21900 1.00788 0.92445 0.91414 1.60044 1.24480 1.46282 1.01265 1.21631 1.02600 0.94510 0.88337 1.21037 0.83532 0.89338 0.82569 1.90541 1.50543 1.34893 1.73928 1.42040 1.53901 1.21465 1.05886 1.19021 1.35667 1.02000 0.89271 0.92663 1.26114 0.97521 1.01829 0.95857 1.69802 1.45311 1.36313 1.06065 0.85361 0.79037 0.78168 0.78921 1.18215 1.20095 1.15366 0.92144 0.93486 0.87971 0.87260 0.87101 0.89791 0.88572 0.91069 0.79318 0.74542 0.91185 0.91143 0.90153 0.90423 0.93672 0.89881 0.83590 0.90507 0.86773 0.77446 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.24 71.98 0.74 -1.32 16 2 C 0.11 1.64 6.58 86.38 0.57 2.20 16 3 N -0.26 -5.10 3.35 -334.67 -1.12 -6.22 16 4 N -0.30 -6.03 11.90 -47.49 -0.57 -6.59 16 5 C 0.01 0.18 7.22 43.05 0.31 0.49 16 6 C -0.07 -0.60 10.45 71.24 0.74 0.14 16 7 C -0.18 -2.57 10.43 22.66 0.24 -2.33 16 8 C -0.06 -1.04 6.96 40.79 0.28 -0.75 16 9 C 0.59 11.15 7.78 86.59 0.67 11.82 16 10 O -0.57 -13.72 14.68 -4.12 -0.06 -13.78 16 11 N -0.70 -9.40 5.53 -466.64 -2.58 -11.98 16 12 C 0.13 1.74 5.68 86.38 0.49 2.23 16 13 C -0.12 -1.60 5.59 30.59 0.17 -1.43 16 14 C 0.06 1.08 5.69 86.30 0.49 1.58 16 15 N -0.69 -18.20 6.13 -517.95 -3.17 -21.38 16 16 C 0.06 1.76 6.17 85.56 0.53 2.29 16 17 C 0.45 19.69 7.82 87.66 0.69 20.38 16 18 O -0.61 -33.45 15.78 -3.07 -0.05 -33.50 16 19 N -0.59 -27.42 5.09 -306.99 -1.56 -28.98 16 20 C -0.33 -19.23 10.16 84.04 0.85 -18.37 16 21 H 0.06 3.84 7.39 -2.91 -0.02 3.81 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 23 N -0.93 -56.04 13.96 21.66 0.30 -55.74 16 24 Si 0.97 38.28 27.74 68.60 1.90 40.18 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 27 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 1.83 6.20 -2.39 -0.01 1.82 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.19 1.36 7.62 -2.91 -0.02 1.34 16 37 H 0.42 3.60 7.55 -92.71 -0.70 2.90 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.35 9.74 8.43 -89.69 -0.76 8.98 16 45 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.39 14.85 5.76 -92.71 -0.53 14.32 16 48 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -83.17 404.54 -0.72 -83.88 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -1.05 Total: 37.51 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 7.24 Total: 16.59 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -8.70 Total: -130.89 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.11 Total: -47.28 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.90 Total: 40.18 kcal Total: -83.17 -0.72 -83.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167264664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.049 kcal (2) G-P(sol) polarization free energy of solvation -83.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds