Wall clock time and date at job start Tue Mar 31 2020 19:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47273 * 179.97438 * 9 8 7 11 11 N 1.46903 * 109.47143 * 179.97438 * 10 9 8 12 12 C 1.46893 * 111.00158 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47355 * 180.02562 * 12 11 10 14 14 O 1.21293 * 119.99944 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00068 * 180.02562 * 13 12 11 16 16 C 1.37108 * 119.99952 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99941 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00046 * 180.02562 * 16 15 13 19 19 N 1.31417 * 119.99963 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00199 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46802 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47729 * 119.99762 * 20 18 16 23 23 H 1.48500 * 109.47154 * 240.00100 * 20 18 16 24 24 N 1.46493 * 109.47203 * 119.99910 * 2 1 3 25 25 C 1.36876 * 126.40236 * 239.71325 * 24 2 1 26 26 C 1.34670 * 106.82229 * 179.84126 * 25 24 2 27 27 N 1.34128 * 108.01732 * 0.42692 * 26 25 24 28 28 C 1.30503 * 109.25564 * 359.72957 * 27 26 25 29 29 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 30 30 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 34 34 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 35 35 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 36 36 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 37 37 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 38 38 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 39 39 H 1.08992 * 109.47143 * 300.00104 * 10 9 8 40 40 H 1.08997 * 109.46799 * 60.00311 * 10 9 8 41 41 H 1.00905 * 110.99587 * 56.05100 * 11 10 9 42 42 H 1.09001 * 109.47369 * 300.00490 * 12 11 10 43 43 H 1.09000 * 109.46687 * 60.00685 * 12 11 10 44 44 H 0.96997 * 120.00375 * 0.02562 * 15 13 12 45 45 H 0.97004 * 119.99718 * 180.02562 * 19 18 16 46 46 H 1.08006 * 126.59052 * 359.97438 * 25 24 2 47 47 H 1.07993 * 125.99217 * 180.11550 * 26 25 24 48 48 H 1.08003 * 125.64595 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 1.6073 0.3712 -4.8927 9 6 2.1216 -0.3473 -6.1417 10 6 1.7216 0.4458 -7.3874 11 7 2.2159 -0.2438 -8.5866 12 6 1.8492 0.4904 -9.8049 13 6 2.3715 -0.2459 -11.0116 14 8 2.9882 -1.2808 -10.8706 15 7 2.1534 0.2455 -12.2474 16 6 2.6281 -0.4246 -13.3453 17 1 3.1772 -1.3461 -13.2197 18 6 2.4037 0.0823 -14.6194 19 7 1.7369 1.2043 -14.7721 20 14 3.0499 -0.8311 -16.1152 21 1 3.7624 -2.0579 -15.6764 22 1 1.9141 -1.2059 -16.9953 23 1 3.9876 0.0446 -16.8630 24 7 2.0183 -0.6906 1.1961 25 6 2.8129 -0.1570 2.1746 26 6 3.0184 -1.1295 3.0832 27 7 2.3747 -2.2298 2.6660 28 6 1.7735 -1.9743 1.5363 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7993 -1.2057 34 1 2.4935 -1.2124 -3.7906 35 1 0.5212 0.4500 -4.9405 36 1 2.0421 1.3695 -4.8424 37 1 3.2076 -0.4266 -6.0941 38 1 1.6863 -1.3454 -6.1917 39 1 0.6356 0.5246 -7.4348 40 1 2.1565 1.4440 -7.3376 41 1 1.8784 -1.1941 -8.6222 42 1 0.7639 0.5687 -9.8691 43 1 2.2843 1.4893 -9.7719 44 1 1.6606 1.0733 -12.3602 45 1 1.5799 1.5580 -15.6616 46 1 3.1990 0.8510 2.2120 47 1 3.6034 -1.0407 3.9866 48 1 1.1789 -2.6739 0.9675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167432554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:43 Heat of formation + Delta-G solvation = -17.758579 kcal Electronic energy + Delta-G solvation = -26983.746862 eV Core-core repulsion = 22881.504331 eV Total energy + Delta-G solvation = -4102.242531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52137 -40.36057 -38.37381 -36.92986 -36.04462 -35.00026 -33.89099 -31.96647 -31.32832 -31.10004 -29.66142 -28.74990 -27.00890 -24.95469 -23.91589 -23.09575 -21.85769 -21.77609 -21.16034 -20.34454 -19.26249 -18.13902 -17.91170 -17.05526 -16.59948 -16.56385 -15.98657 -15.83952 -15.52138 -15.20368 -14.86897 -14.53896 -14.42240 -14.29241 -14.13996 -13.94509 -13.72346 -13.56665 -13.51456 -13.34380 -13.00455 -12.46851 -12.17224 -12.09644 -11.92905 -11.89235 -11.85305 -11.51362 -11.49693 -11.15351 -11.02245 -10.42111 -10.36872 -10.33344 -10.25518 -10.05894 -9.55320 -9.54621 -8.91906 -8.52314 -8.13489 -7.99581 -6.45003 -3.85994 1.64121 2.06475 2.14394 2.77969 2.81226 3.13950 3.24818 3.31904 3.80092 3.86765 4.02386 4.06946 4.19301 4.24433 4.30916 4.46350 4.52887 4.68897 4.75895 4.84266 4.86034 4.94241 5.03310 5.10863 5.15425 5.21963 5.24870 5.32417 5.33225 5.38277 5.51771 5.62035 5.73033 5.84230 5.88276 5.91243 5.93623 6.00298 6.22324 6.34197 6.76051 6.94564 7.12387 7.52323 7.57393 7.66246 7.69122 8.03083 8.57560 9.14588 9.50732 10.01837 10.72747 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042145 B = 0.001211 C = 0.001190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.215967 B =23113.814697 C =23514.128042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.149 3.851 3 H 0.110 0.890 4 C -0.154 4.154 5 C 0.519 3.481 6 O -0.537 6.537 7 N -0.725 5.725 8 C 0.120 3.880 9 C -0.130 4.130 10 C 0.062 3.938 11 N -0.669 5.669 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.584 6.584 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.104 0.896 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 N -0.455 5.455 25 C -0.055 4.055 26 C -0.032 4.032 27 N -0.496 5.496 28 C 0.181 3.819 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.404 0.596 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.173 0.827 47 H 0.169 0.831 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 -0.095 30.302 30.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.128 0.872 4 C -0.195 4.195 5 C 0.304 3.696 6 O -0.414 6.414 7 N -0.377 5.377 8 C -0.004 4.004 9 C -0.168 4.168 10 C -0.068 4.068 11 N -0.302 5.302 12 C -0.082 4.082 13 C 0.225 3.775 14 O -0.469 6.469 15 N -0.200 5.200 16 C -0.430 4.430 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 N -0.138 5.138 25 C -0.188 4.188 26 C -0.180 4.180 27 N -0.214 5.214 28 C -0.102 4.102 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.190 0.810 47 H 0.186 0.814 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.042 -0.340 30.602 30.672 hybrid contribution -0.657 0.380 -1.491 1.673 sum -2.699 0.040 29.111 29.236 Atomic orbital electron populations 1.22304 0.92238 1.03135 1.04833 1.21141 0.96327 0.96890 0.81045 0.87223 1.22023 1.04124 1.01002 0.92359 1.20201 0.79359 0.85600 0.84428 1.90721 1.39806 1.24347 1.86561 1.46005 1.57701 1.28034 1.05921 1.21376 1.00464 0.95528 0.83030 1.21750 1.02799 0.99560 0.92691 1.21823 0.97259 0.98278 0.89425 1.60062 1.63988 1.05997 1.00136 1.21672 0.98202 0.98354 0.89983 1.19802 0.85887 0.87731 0.84061 1.90520 1.45051 1.25518 1.85762 1.41871 1.49534 1.24090 1.04466 1.19763 1.32365 1.07249 0.83581 0.87848 1.25265 0.97127 0.96362 0.99148 1.69623 1.40591 1.19898 1.24150 0.85798 0.78457 0.79413 0.80670 1.19196 1.20752 1.20719 1.45779 1.37922 1.11505 1.18602 1.22800 1.02187 1.01447 0.92334 1.22321 1.04660 0.89610 1.01361 1.70318 1.12384 1.28231 1.10491 1.24898 1.03907 0.85353 0.96003 0.88346 0.92070 0.91718 0.87787 0.87832 0.76179 0.91231 0.91026 0.90065 0.91192 0.95223 0.90767 0.83180 0.93800 0.89535 0.77444 0.91896 0.80954 0.81418 0.78249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 8.98 37.16 0.33 -0.57 16 2 C 0.15 0.77 2.70 -67.94 -0.18 0.58 16 3 H 0.11 0.62 7.90 -51.92 -0.41 0.21 16 4 C -0.15 -0.62 5.17 -27.88 -0.14 -0.76 16 5 C 0.52 3.47 7.55 -10.98 -0.08 3.39 16 6 O -0.54 -5.44 13.97 5.55 0.08 -5.36 16 7 N -0.73 -4.20 5.56 -60.29 -0.33 -4.54 16 8 C 0.12 0.88 5.67 -4.04 -0.02 0.85 16 9 C -0.13 -1.04 5.59 -26.73 -0.15 -1.19 16 10 C 0.06 0.66 5.69 -3.82 -0.02 0.64 16 11 N -0.67 -10.05 6.13 -115.06 -0.71 -10.75 16 12 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 13 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 14 O -0.58 -15.62 15.78 5.55 0.09 -15.53 16 15 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 16 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 20 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 N -0.45 -2.83 2.62 -111.46 -0.29 -3.12 16 25 C -0.05 -0.36 11.54 -16.56 -0.19 -0.55 16 26 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 27 N -0.50 -4.89 11.25 -14.66 -0.16 -5.06 16 28 C 0.18 1.30 11.65 -90.37 -1.05 0.24 16 29 H 0.10 0.69 5.95 -51.93 -0.31 0.38 16 30 H 0.06 0.27 7.95 -51.93 -0.41 -0.14 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.40 1.45 8.47 -40.82 -0.35 1.10 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.35 5.36 8.43 -39.29 -0.33 5.03 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.17 0.69 8.06 -52.48 -0.42 0.26 16 47 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.20 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 405.82 15.07 6.12 6.12 Total: -1.00 -35.12 405.82 -9.21 -44.34 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -7.56 Total: 10.65 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -2.08 Total: 5.18 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.83 Total: -61.17 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.17 Total: -20.89 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.12 -9.21 -44.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167432554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.579 kcal (2) G-P(sol) polarization free energy of solvation -35.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds