Wall clock time and date at job start Tue Mar 31 2020 19:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47273 * 179.97438 * 9 8 7 11 11 N 1.46903 * 109.47143 * 179.97438 * 10 9 8 12 12 C 1.46893 * 111.00158 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47355 * 180.02562 * 12 11 10 14 14 O 1.21293 * 119.99944 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00068 * 180.02562 * 13 12 11 16 16 C 1.37108 * 119.99952 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99941 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00046 * 180.02562 * 16 15 13 19 19 N 1.31417 * 119.99963 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00199 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46802 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47729 * 119.99762 * 20 18 16 23 23 H 1.48500 * 109.47154 * 240.00100 * 20 18 16 24 24 N 1.46493 * 109.47203 * 119.99910 * 2 1 3 25 25 C 1.36876 * 126.40236 * 239.71325 * 24 2 1 26 26 C 1.34670 * 106.82229 * 179.84126 * 25 24 2 27 27 N 1.34128 * 108.01732 * 0.42692 * 26 25 24 28 28 C 1.30503 * 109.25564 * 359.72957 * 27 26 25 29 29 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 30 30 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 34 34 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 35 35 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 36 36 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 37 37 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 38 38 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 39 39 H 1.08992 * 109.47143 * 300.00104 * 10 9 8 40 40 H 1.08997 * 109.46799 * 60.00311 * 10 9 8 41 41 H 1.00905 * 110.99587 * 56.05100 * 11 10 9 42 42 H 1.09001 * 109.47369 * 300.00490 * 12 11 10 43 43 H 1.09000 * 109.46687 * 60.00685 * 12 11 10 44 44 H 0.96997 * 120.00375 * 0.02562 * 15 13 12 45 45 H 0.97004 * 119.99718 * 180.02562 * 19 18 16 46 46 H 1.08006 * 126.59052 * 359.97438 * 25 24 2 47 47 H 1.07993 * 125.99217 * 180.11550 * 26 25 24 48 48 H 1.08003 * 125.64595 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 1.6073 0.3712 -4.8927 9 6 2.1216 -0.3473 -6.1417 10 6 1.7216 0.4458 -7.3874 11 7 2.2159 -0.2438 -8.5866 12 6 1.8492 0.4904 -9.8049 13 6 2.3715 -0.2459 -11.0116 14 8 2.9882 -1.2808 -10.8706 15 7 2.1534 0.2455 -12.2474 16 6 2.6281 -0.4246 -13.3453 17 1 3.1772 -1.3461 -13.2197 18 6 2.4037 0.0823 -14.6194 19 7 1.7369 1.2043 -14.7721 20 14 3.0499 -0.8311 -16.1152 21 1 3.7624 -2.0579 -15.6764 22 1 1.9141 -1.2059 -16.9953 23 1 3.9876 0.0446 -16.8630 24 7 2.0183 -0.6906 1.1961 25 6 2.8129 -0.1570 2.1746 26 6 3.0184 -1.1295 3.0832 27 7 2.3747 -2.2298 2.6660 28 6 1.7735 -1.9743 1.5363 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7993 -1.2057 34 1 2.4935 -1.2124 -3.7906 35 1 0.5212 0.4500 -4.9405 36 1 2.0421 1.3695 -4.8424 37 1 3.2076 -0.4266 -6.0941 38 1 1.6863 -1.3454 -6.1917 39 1 0.6356 0.5246 -7.4348 40 1 2.1565 1.4440 -7.3376 41 1 1.8784 -1.1941 -8.6222 42 1 0.7639 0.5687 -9.8691 43 1 2.2843 1.4893 -9.7719 44 1 1.6606 1.0733 -12.3602 45 1 1.5799 1.5580 -15.6616 46 1 3.1990 0.8510 2.2120 47 1 3.6034 -1.0407 3.9866 48 1 1.1789 -2.6739 0.9675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167432554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:42 Heat of formation + Delta-G solvation = -43.604817 kcal Electronic energy + Delta-G solvation = -26984.867639 eV Core-core repulsion = 22881.504331 eV Total energy + Delta-G solvation = -4103.363308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.02089 -40.90546 -40.15664 -37.76701 -36.69307 -36.05283 -35.61012 -33.30104 -32.65309 -31.80080 -30.17261 -29.35933 -28.23678 -26.40676 -24.79730 -23.94589 -22.57724 -22.29419 -21.70463 -21.09757 -20.78967 -19.90315 -18.58655 -17.85141 -17.56996 -17.27480 -17.02413 -16.69224 -16.49140 -16.11393 -15.96024 -15.86830 -15.52937 -15.14846 -14.95295 -14.81700 -14.58858 -14.50225 -14.26964 -14.12232 -13.82847 -13.56466 -13.37924 -13.22931 -12.92676 -12.79493 -12.69034 -12.50353 -12.41144 -12.39753 -12.25624 -12.10988 -11.83516 -11.51467 -11.00006 -10.89739 -10.59384 -10.35517 -10.09902 -10.01835 -9.43182 -9.33338 -8.47209 -5.96042 1.15527 1.36765 1.42437 1.56419 1.56743 1.67196 2.04736 2.24876 2.26517 2.32097 2.95709 3.20394 3.41348 3.52878 3.67204 3.79292 3.89252 4.01550 4.04560 4.11328 4.16563 4.23292 4.34341 4.43746 4.49093 4.51008 4.58184 4.59366 4.61270 4.71387 4.73504 4.78242 4.82525 4.88239 5.15085 5.18699 5.23522 5.38369 5.41019 5.45734 5.84424 5.88546 6.09877 6.29499 6.41230 6.50412 6.59563 7.12300 7.17027 7.19568 7.55909 8.10891 8.70376 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042145 B = 0.001211 C = 0.001190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.215967 B =23113.814697 C =23514.128042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.104 0.896 4 C -0.144 4.144 5 C 0.519 3.481 6 O -0.574 6.574 7 N -0.718 5.718 8 C 0.127 3.873 9 C -0.117 4.117 10 C 0.062 3.938 11 N -0.684 5.684 12 C 0.064 3.936 13 C 0.436 3.564 14 O -0.624 6.624 15 N -0.573 5.573 16 C -0.335 4.335 17 H 0.079 0.921 18 C -0.012 4.012 19 N -0.920 5.920 20 Si 0.992 3.008 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.272 1.272 24 N -0.451 5.451 25 C -0.054 4.054 26 C -0.056 4.056 27 N -0.539 5.539 28 C 0.179 3.821 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.416 0.584 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.345 0.655 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.195 0.805 47 H 0.178 0.822 48 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 -0.148 30.527 30.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.050 3.950 3 H 0.122 0.878 4 C -0.184 4.184 5 C 0.305 3.695 6 O -0.454 6.454 7 N -0.370 5.370 8 C 0.003 3.997 9 C -0.155 4.155 10 C -0.067 4.067 11 N -0.316 5.316 12 C -0.068 4.068 13 C 0.224 3.776 14 O -0.510 6.510 15 N -0.210 5.210 16 C -0.464 4.464 17 H 0.097 0.903 18 C -0.212 4.212 19 N -0.561 5.561 20 Si 0.816 3.184 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.197 1.197 24 N -0.134 5.134 25 C -0.187 4.187 26 C -0.203 4.203 27 N -0.258 5.258 28 C -0.104 4.104 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.253 0.747 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.212 0.788 47 H 0.195 0.805 48 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.223 -0.382 30.840 30.922 hybrid contribution -0.612 0.413 -1.503 1.675 sum -2.835 0.032 29.337 29.474 Atomic orbital electron populations 1.22225 0.92448 1.03601 1.03705 1.21115 0.96071 0.96704 0.81124 0.87805 1.21970 1.04880 1.01347 0.90231 1.20601 0.78552 0.85178 0.85139 1.90716 1.41547 1.26077 1.87075 1.45922 1.57433 1.28301 1.05329 1.21180 1.00038 0.95204 0.83273 1.21594 1.02560 0.99576 0.91739 1.21920 0.97960 0.98393 0.88474 1.60066 1.64888 1.06030 1.00658 1.21531 0.99263 0.98058 0.87949 1.20915 0.84356 0.87243 0.85101 1.90487 1.46548 1.27430 1.86550 1.41944 1.50020 1.24281 1.04783 1.19719 1.33963 1.07434 0.85304 0.90283 1.26028 0.96871 0.97027 1.01229 1.69680 1.40738 1.20571 1.25154 0.84876 0.78184 0.78070 0.77247 1.19727 1.19584 1.19677 1.45825 1.37585 1.11303 1.18689 1.23175 1.01603 1.02108 0.91830 1.22630 1.05426 0.89846 1.02401 1.70283 1.13913 1.29528 1.12070 1.25390 1.03446 0.85964 0.95558 0.89812 0.90819 0.92411 0.85480 0.86658 0.74684 0.91686 0.91897 0.90405 0.90400 0.94029 0.90399 0.83610 0.91513 0.87865 0.76965 0.91301 0.78777 0.80513 0.75727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.98 71.98 0.65 -0.91 16 2 C 0.15 1.32 2.70 44.99 0.12 1.44 16 3 H 0.10 1.05 7.90 -2.38 -0.02 1.03 16 4 C -0.14 -0.81 5.17 29.85 0.15 -0.65 16 5 C 0.52 6.03 7.55 87.66 0.66 6.70 16 6 O -0.57 -11.13 13.97 -3.04 -0.04 -11.17 16 7 N -0.72 -6.84 5.56 -463.06 -2.57 -9.41 16 8 C 0.13 1.64 5.67 86.38 0.49 2.13 16 9 C -0.12 -1.63 5.59 30.59 0.17 -1.46 16 10 C 0.06 1.18 5.69 86.30 0.49 1.67 16 11 N -0.68 -19.56 6.13 -517.95 -3.17 -22.73 16 12 C 0.06 2.09 6.17 85.56 0.53 2.62 16 13 C 0.44 20.30 7.82 87.66 0.69 20.98 16 14 O -0.62 -33.89 15.78 -3.07 -0.05 -33.94 16 15 N -0.57 -28.97 5.29 -306.99 -1.62 -30.59 16 16 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 17 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 18 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 19 N -0.92 -49.14 13.05 21.66 0.28 -48.85 16 20 Si 0.99 42.38 29.55 68.60 2.03 44.41 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 N -0.45 -4.88 2.62 -506.55 -1.33 -6.20 16 25 C -0.05 -0.64 11.54 83.09 0.96 0.32 16 26 C -0.06 -0.88 11.87 83.52 0.99 0.11 16 27 N -0.54 -10.31 11.25 -200.31 -2.25 -12.57 16 28 C 0.18 2.29 11.65 180.26 2.10 4.39 16 29 H 0.08 1.12 5.95 -2.39 -0.01 1.10 16 30 H 0.07 0.50 7.95 -2.39 -0.02 0.48 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.13 0.17 8.08 -2.38 -0.02 0.15 16 33 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.42 1.90 8.47 -92.71 -0.79 1.11 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.35 10.26 8.43 -89.69 -0.76 9.50 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.40 19.00 7.90 -92.71 -0.73 18.26 16 45 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 46 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 47 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 48 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -76.86 405.82 -0.73 -77.59 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: -1.28 Total: 34.29 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 9.28 Total: 19.17 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -10.67 Total: -130.35 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.09 Total: -45.11 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -76.86 -0.73 -77.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167432554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.984 kcal (2) G-P(sol) polarization free energy of solvation -76.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds