Wall clock time and date at job start Tue Mar 31 2020 19:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 O 1.21276 * 120.00120 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99616 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99916 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47030 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.46919 * 179.97438 * 9 8 7 11 11 N 1.46898 * 109.47183 * 179.97438 * 10 9 8 12 12 C 1.46898 * 111.00586 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47841 * 180.02562 * 12 11 10 14 14 O 1.21301 * 119.99591 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00337 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00221 * 180.02562 * 15 13 12 17 17 H 1.08005 * 119.99885 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00248 * 180.02562 * 16 15 13 19 19 N 1.31413 * 120.00045 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00080 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46727 * 60.00235 * 20 18 16 22 22 H 1.48504 * 109.47099 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47255 * 300.00015 * 20 18 16 24 24 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 25 25 C 1.36885 * 126.39286 * 120.00096 * 24 2 1 26 26 C 1.34665 * 106.81493 * 179.97438 * 25 24 2 27 27 N 1.34129 * 108.02445 * 0.02562 * 26 25 24 28 28 C 1.30498 * 109.25189 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 31 31 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 32 32 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 33 33 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 34 34 H 0.96999 * 120.00048 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.46527 * 299.99751 * 8 7 5 36 36 H 1.08996 * 109.46980 * 59.99074 * 8 7 5 37 37 H 1.08997 * 109.47473 * 299.99941 * 9 8 7 38 38 H 1.09001 * 109.47143 * 59.99974 * 9 8 7 39 39 H 1.08997 * 109.47386 * 299.99900 * 10 9 8 40 40 H 1.09001 * 109.46865 * 60.00257 * 10 9 8 41 41 H 1.00903 * 110.99892 * 56.04336 * 11 10 9 42 42 H 1.09007 * 109.46469 * 300.00474 * 12 11 10 43 43 H 1.08996 * 109.46980 * 59.99448 * 12 11 10 44 44 H 0.96999 * 119.99914 * 359.97438 * 15 13 12 45 45 H 0.97003 * 119.99826 * 180.02562 * 19 18 16 46 46 H 1.07999 * 126.59054 * 359.73997 * 25 24 2 47 47 H 1.08008 * 125.98738 * 179.97438 * 26 25 24 48 48 H 1.08006 * 125.64605 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0874 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 1.5980 0.3655 4.8933 9 6 2.1078 -0.3558 6.1425 10 6 1.7040 0.4351 7.3885 11 7 2.1930 -0.2577 8.5880 12 6 1.8224 0.4741 9.8066 13 6 2.3404 -0.2647 11.0135 14 8 2.9572 -1.2997 10.8725 15 7 2.1183 0.2242 12.2496 16 6 2.5900 -0.4477 13.3476 17 1 3.1392 -1.3691 13.2220 18 6 2.3606 0.0562 14.6220 19 7 1.6919 1.1771 14.7749 20 14 3.0027 -0.8598 16.1181 21 1 4.4815 -0.9672 16.0356 22 1 2.6286 -0.1195 17.3499 23 1 2.4089 -2.2203 16.1580 24 7 2.0184 -0.6907 -1.1961 25 6 2.8085 -0.1554 -2.1774 26 6 3.0192 -1.1298 -3.0827 27 7 2.3748 -2.2299 -2.6660 28 6 1.7733 -1.9743 -1.5365 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 2.4891 -1.2152 3.7908 35 1 2.0327 1.3641 4.8469 36 1 0.5118 0.4439 4.9372 37 1 1.6729 -1.3541 6.1886 38 1 3.1941 -0.4344 6.0987 39 1 2.1394 1.4333 7.3422 40 1 0.6178 0.5141 7.4324 41 1 3.1907 -0.4012 8.5412 42 1 2.2586 1.4727 9.7774 43 1 0.7370 0.5535 9.8668 44 1 1.6254 1.0520 12.3624 45 1 1.5321 1.5290 15.6646 46 1 3.1868 0.8553 -2.2195 47 1 3.6039 -1.0408 -3.9865 48 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167432555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:46 Heat of formation + Delta-G solvation = -17.633869 kcal Electronic energy + Delta-G solvation = -26983.352189 eV Core-core repulsion = 22881.115066 eV Total energy + Delta-G solvation = -4102.237123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52158 -40.36096 -38.36940 -36.92814 -36.04305 -34.99904 -33.88845 -31.96544 -31.32705 -31.09888 -29.66194 -28.74741 -27.00750 -24.95182 -23.91407 -23.09358 -21.85672 -21.77640 -21.15915 -20.34376 -19.25933 -18.13752 -17.91063 -17.05554 -16.69626 -16.38692 -16.10627 -15.81277 -15.53154 -15.16208 -14.83132 -14.57840 -14.43497 -14.27575 -14.17063 -13.93465 -13.73007 -13.56512 -13.43091 -13.39033 -13.03349 -12.43792 -12.15442 -12.10020 -11.94641 -11.89155 -11.84961 -11.50925 -11.49435 -11.13125 -10.99847 -10.46626 -10.41862 -10.33438 -10.24164 -10.05857 -9.54569 -9.53105 -8.91996 -8.52038 -8.13228 -7.99425 -6.44593 -3.85693 1.64137 2.06349 2.14570 2.78022 2.81287 3.17893 3.23908 3.28130 3.80218 3.87016 4.02565 4.06931 4.19493 4.24477 4.31127 4.46245 4.53016 4.69059 4.76121 4.84397 4.86201 4.94356 5.03215 5.11053 5.15677 5.22188 5.25250 5.32426 5.33208 5.38554 5.51793 5.62653 5.73187 5.84263 5.88555 5.91249 5.93742 6.00420 6.22542 6.34110 6.76084 6.94634 7.12593 7.52101 7.57602 7.66315 7.69164 8.02803 8.57895 9.14609 9.50852 10.02140 10.72992 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042179 B = 0.001211 C = 0.001190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.679009 B =23114.312052 C =23515.295885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.149 3.851 3 H 0.110 0.890 4 C -0.154 4.154 5 C 0.519 3.481 6 O -0.537 6.537 7 N -0.725 5.725 8 C 0.120 3.880 9 C -0.130 4.130 10 C 0.062 3.938 11 N -0.670 5.670 12 C 0.051 3.949 13 C 0.439 3.561 14 O -0.585 6.585 15 N -0.562 5.562 16 C -0.302 4.302 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.455 5.455 25 C -0.055 4.055 26 C -0.032 4.032 27 N -0.496 5.496 28 C 0.181 3.819 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.404 0.596 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.173 0.827 47 H 0.169 0.831 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 0.911 -30.356 30.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.128 0.872 4 C -0.195 4.195 5 C 0.304 3.696 6 O -0.414 6.414 7 N -0.377 5.377 8 C -0.004 4.004 9 C -0.168 4.168 10 C -0.068 4.068 11 N -0.302 5.302 12 C -0.082 4.082 13 C 0.225 3.775 14 O -0.469 6.469 15 N -0.199 5.199 16 C -0.431 4.431 17 H 0.120 0.880 18 C -0.178 4.178 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.199 1.199 24 N -0.138 5.138 25 C -0.188 4.188 26 C -0.180 4.180 27 N -0.214 5.214 28 C -0.101 4.101 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.190 0.810 47 H 0.186 0.814 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.628 -0.029 -30.576 30.620 hybrid contribution 0.885 1.284 1.383 2.084 sum -0.743 1.255 -29.194 29.230 Atomic orbital electron populations 1.22306 0.92223 1.03163 1.04834 1.21143 0.96342 0.96866 0.81047 0.87245 1.22023 1.04094 1.01031 0.92357 1.20198 0.79359 0.85596 0.84431 1.90718 1.39762 1.24381 1.86570 1.46007 1.57726 1.28051 1.05884 1.21376 1.00674 0.95333 0.83010 1.21750 1.01756 1.00669 0.92627 1.21823 1.00904 0.94757 0.89294 1.60043 1.21007 1.49234 0.99918 1.21668 1.01428 0.95002 0.90085 1.19800 0.85887 0.87721 0.84117 1.90521 1.45281 1.25286 1.85808 1.41852 1.49556 1.24037 1.04434 1.19662 1.32561 1.07295 0.83597 0.87959 1.25261 0.97069 0.96371 0.99128 1.69605 1.40350 1.19973 1.24345 0.85916 0.79246 0.79206 0.79836 1.19908 1.20946 1.19852 1.45782 1.38074 1.11461 1.18500 1.22796 1.02341 1.01344 0.92313 1.22322 1.04648 0.89577 1.01404 1.70319 1.12337 1.28272 1.10500 1.24901 1.03869 0.85406 0.95955 0.92045 0.88334 0.91723 0.87747 0.87871 0.76179 0.91266 0.90990 0.90039 0.91218 0.95241 0.90755 0.83175 0.93816 0.89534 0.77437 0.91785 0.80968 0.81423 0.78231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 8.98 37.16 0.33 -0.58 16 2 C 0.15 0.77 2.70 -67.92 -0.18 0.58 16 3 H 0.11 0.62 7.89 -51.93 -0.41 0.21 16 4 C -0.15 -0.62 5.17 -27.88 -0.14 -0.76 16 5 C 0.52 3.48 7.55 -10.98 -0.08 3.39 16 6 O -0.54 -5.44 13.97 5.56 0.08 -5.36 16 7 N -0.73 -4.21 5.56 -60.29 -0.33 -4.54 16 8 C 0.12 0.88 5.67 -4.04 -0.02 0.85 16 9 C -0.13 -1.04 5.59 -26.73 -0.15 -1.19 16 10 C 0.06 0.66 5.69 -3.82 -0.02 0.64 16 11 N -0.67 -10.06 6.13 -115.06 -0.70 -10.77 16 12 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 13 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 14 O -0.58 -15.63 15.78 5.54 0.09 -15.55 16 15 N -0.56 -14.08 5.29 -10.97 -0.06 -14.13 16 16 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 17 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 18 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 19 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 20 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 N -0.45 -2.83 2.62 -111.45 -0.29 -3.12 16 25 C -0.06 -0.36 11.54 -16.56 -0.19 -0.55 16 26 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 27 N -0.50 -4.90 11.25 -14.66 -0.16 -5.06 16 28 C 0.18 1.30 11.65 -90.38 -1.05 0.25 16 29 H 0.06 0.27 7.95 -51.93 -0.41 -0.14 16 30 H 0.10 0.69 5.95 -51.93 -0.31 0.38 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.40 1.45 8.47 -40.82 -0.35 1.10 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.35 5.38 8.43 -39.29 -0.33 5.05 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 48 H 0.20 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 405.82 15.07 6.12 6.12 Total: -1.00 -35.06 405.82 -9.21 -44.28 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -7.56 Total: 10.75 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.08 Total: 5.16 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.83 Total: -61.18 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.17 Total: -20.91 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.06 -9.21 -44.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167432555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.644 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds