Wall clock time and date at job start Tue Mar 31 2020 19:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 O 1.21276 * 120.00120 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99616 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99916 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47030 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.46919 * 179.97438 * 9 8 7 11 11 N 1.46898 * 109.47183 * 179.97438 * 10 9 8 12 12 C 1.46898 * 111.00586 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47841 * 180.02562 * 12 11 10 14 14 O 1.21301 * 119.99591 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00337 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00221 * 180.02562 * 15 13 12 17 17 H 1.08005 * 119.99885 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00248 * 180.02562 * 16 15 13 19 19 N 1.31413 * 120.00045 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00080 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46727 * 60.00235 * 20 18 16 22 22 H 1.48504 * 109.47099 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47255 * 300.00015 * 20 18 16 24 24 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 25 25 C 1.36885 * 126.39286 * 120.00096 * 24 2 1 26 26 C 1.34665 * 106.81493 * 179.97438 * 25 24 2 27 27 N 1.34129 * 108.02445 * 0.02562 * 26 25 24 28 28 C 1.30498 * 109.25189 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 31 31 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 32 32 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 33 33 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 34 34 H 0.96999 * 120.00048 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.46527 * 299.99751 * 8 7 5 36 36 H 1.08996 * 109.46980 * 59.99074 * 8 7 5 37 37 H 1.08997 * 109.47473 * 299.99941 * 9 8 7 38 38 H 1.09001 * 109.47143 * 59.99974 * 9 8 7 39 39 H 1.08997 * 109.47386 * 299.99900 * 10 9 8 40 40 H 1.09001 * 109.46865 * 60.00257 * 10 9 8 41 41 H 1.00903 * 110.99892 * 56.04336 * 11 10 9 42 42 H 1.09007 * 109.46469 * 300.00474 * 12 11 10 43 43 H 1.08996 * 109.46980 * 59.99448 * 12 11 10 44 44 H 0.96999 * 119.99914 * 359.97438 * 15 13 12 45 45 H 0.97003 * 119.99826 * 180.02562 * 19 18 16 46 46 H 1.07999 * 126.59054 * 359.73997 * 25 24 2 47 47 H 1.08008 * 125.98738 * 179.97438 * 26 25 24 48 48 H 1.08006 * 125.64605 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0874 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 1.5980 0.3655 4.8933 9 6 2.1078 -0.3558 6.1425 10 6 1.7040 0.4351 7.3885 11 7 2.1930 -0.2577 8.5880 12 6 1.8224 0.4741 9.8066 13 6 2.3404 -0.2647 11.0135 14 8 2.9572 -1.2997 10.8725 15 7 2.1183 0.2242 12.2496 16 6 2.5900 -0.4477 13.3476 17 1 3.1392 -1.3691 13.2220 18 6 2.3606 0.0562 14.6220 19 7 1.6919 1.1771 14.7749 20 14 3.0027 -0.8598 16.1181 21 1 4.4815 -0.9672 16.0356 22 1 2.6286 -0.1195 17.3499 23 1 2.4089 -2.2203 16.1580 24 7 2.0184 -0.6907 -1.1961 25 6 2.8085 -0.1554 -2.1774 26 6 3.0192 -1.1298 -3.0827 27 7 2.3748 -2.2299 -2.6660 28 6 1.7733 -1.9743 -1.5365 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 2.4891 -1.2152 3.7908 35 1 2.0327 1.3641 4.8469 36 1 0.5118 0.4439 4.9372 37 1 1.6729 -1.3541 6.1886 38 1 3.1941 -0.4344 6.0987 39 1 2.1394 1.4333 7.3422 40 1 0.6178 0.5141 7.4324 41 1 3.1907 -0.4012 8.5412 42 1 2.2586 1.4727 9.7774 43 1 0.7370 0.5535 9.8668 44 1 1.6254 1.0520 12.3624 45 1 1.5321 1.5290 15.6646 46 1 3.1868 0.8553 -2.2195 47 1 3.6039 -1.0408 -3.9865 48 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167432555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:45 Heat of formation + Delta-G solvation = -43.413288 kcal Electronic energy + Delta-G solvation = -26984.470069 eV Core-core repulsion = 22881.115066 eV Total energy + Delta-G solvation = -4103.355003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.02133 -40.90639 -40.15299 -37.76630 -36.69213 -36.05150 -35.60869 -33.29993 -32.65291 -31.80024 -30.17290 -29.35898 -28.23570 -26.40368 -24.79675 -23.94513 -22.57718 -22.29414 -21.70396 -21.09573 -20.78919 -19.90091 -18.58550 -17.85303 -17.57010 -17.29455 -16.90264 -16.80598 -16.47515 -16.11760 -16.01246 -15.80677 -15.51204 -15.11734 -15.00527 -14.80460 -14.66453 -14.44464 -14.23946 -14.12398 -13.83706 -13.55774 -13.39953 -13.20895 -12.88875 -12.80001 -12.69481 -12.50709 -12.42755 -12.41723 -12.25488 -12.12068 -11.83101 -11.49980 -10.99879 -10.89831 -10.59407 -10.35346 -10.09896 -10.01919 -9.43224 -9.33316 -8.46713 -5.95735 1.15532 1.40179 1.42367 1.53152 1.56609 1.67288 2.05047 2.24864 2.26652 2.32210 2.95769 3.20761 3.41389 3.52918 3.67074 3.79439 3.89309 4.01806 4.04257 4.11101 4.16706 4.23358 4.34382 4.43843 4.49087 4.51070 4.58241 4.59490 4.61220 4.71124 4.73685 4.78277 4.82531 4.88239 5.14795 5.19252 5.23447 5.38374 5.40631 5.45777 5.84433 5.88488 6.09814 6.29431 6.41052 6.50415 6.59819 7.12242 7.17057 7.19577 7.56013 8.11059 8.70376 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042179 B = 0.001211 C = 0.001190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.679009 B =23114.312052 C =23515.295885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.104 0.896 4 C -0.144 4.144 5 C 0.519 3.481 6 O -0.574 6.574 7 N -0.718 5.718 8 C 0.128 3.872 9 C -0.117 4.117 10 C 0.062 3.938 11 N -0.684 5.684 12 C 0.065 3.935 13 C 0.436 3.564 14 O -0.624 6.624 15 N -0.572 5.572 16 C -0.337 4.337 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.920 5.920 20 Si 0.992 3.008 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.272 1.272 24 N -0.451 5.451 25 C -0.054 4.054 26 C -0.056 4.056 27 N -0.539 5.539 28 C 0.179 3.821 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.416 0.584 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.345 0.655 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.195 0.805 47 H 0.178 0.822 48 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 0.954 -30.621 30.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.050 3.950 3 H 0.122 0.878 4 C -0.184 4.184 5 C 0.305 3.695 6 O -0.454 6.454 7 N -0.370 5.370 8 C 0.003 3.997 9 C -0.155 4.155 10 C -0.067 4.067 11 N -0.316 5.316 12 C -0.068 4.068 13 C 0.223 3.777 14 O -0.510 6.510 15 N -0.210 5.210 16 C -0.466 4.466 17 H 0.097 0.903 18 C -0.211 4.211 19 N -0.561 5.561 20 Si 0.816 3.184 21 H -0.196 1.196 22 H -0.195 1.195 23 H -0.197 1.197 24 N -0.134 5.134 25 C -0.187 4.187 26 C -0.203 4.203 27 N -0.258 5.258 28 C -0.104 4.104 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.164 0.836 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.212 0.788 47 H 0.195 0.805 48 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.596 0.021 -30.855 30.896 hybrid contribution 0.858 1.283 1.403 2.086 sum -0.738 1.305 -29.452 29.490 Atomic orbital electron populations 1.22227 0.92480 1.03596 1.03706 1.21116 0.96050 0.96706 0.81127 0.87772 1.21969 1.04894 1.01330 0.90232 1.20598 0.78552 0.85174 0.85142 1.90714 1.41496 1.26114 1.87084 1.45924 1.57454 1.28322 1.05289 1.21180 1.00141 0.95117 0.83254 1.21593 1.02116 1.00085 0.91674 1.21922 1.01123 0.95330 0.88368 1.60049 1.20879 1.50134 1.00570 1.21528 1.02162 0.95034 0.88060 1.20912 0.84327 0.87262 0.85159 1.90487 1.46754 1.27200 1.86596 1.41929 1.50047 1.24230 1.04757 1.19652 1.34153 1.07526 0.85314 0.90257 1.26028 0.96809 0.97042 1.01218 1.69666 1.40506 1.20655 1.25268 0.84999 0.78635 0.78070 0.76704 1.19639 1.19516 1.19713 1.45827 1.37736 1.11249 1.18591 1.23175 1.01721 1.02018 0.91792 1.22633 1.05417 0.89807 1.02451 1.70284 1.13861 1.29581 1.12071 1.25385 1.03429 0.86025 0.95519 0.90844 0.89820 0.92398 0.85520 0.86622 0.74685 0.91887 0.91694 0.90258 0.90548 0.94123 0.90313 0.83630 0.91562 0.87835 0.76966 0.91279 0.78760 0.80506 0.75754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.98 71.98 0.65 -0.93 16 2 C 0.15 1.32 2.70 45.00 0.12 1.44 16 3 H 0.10 1.04 7.89 -2.39 -0.02 1.02 16 4 C -0.14 -0.81 5.17 29.85 0.15 -0.65 16 5 C 0.52 6.04 7.55 87.66 0.66 6.70 16 6 O -0.57 -11.13 13.97 -3.02 -0.04 -11.17 16 7 N -0.72 -6.85 5.56 -463.06 -2.57 -9.42 16 8 C 0.13 1.64 5.67 86.38 0.49 2.13 16 9 C -0.12 -1.63 5.59 30.59 0.17 -1.46 16 10 C 0.06 1.18 5.69 86.30 0.49 1.67 16 11 N -0.68 -19.57 6.13 -517.95 -3.17 -22.74 16 12 C 0.06 2.10 6.17 85.56 0.53 2.63 16 13 C 0.44 20.28 7.82 87.66 0.69 20.97 16 14 O -0.62 -33.88 15.78 -3.10 -0.05 -33.93 16 15 N -0.57 -28.95 5.29 -306.99 -1.62 -30.58 16 16 C -0.34 -18.95 9.68 84.04 0.81 -18.14 16 17 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 18 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 19 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 20 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 24 N -0.45 -4.88 2.62 -506.53 -1.33 -6.20 16 25 C -0.05 -0.64 11.54 83.08 0.96 0.32 16 26 C -0.06 -0.88 11.87 83.52 0.99 0.11 16 27 N -0.54 -10.32 11.25 -200.31 -2.25 -12.58 16 28 C 0.18 2.30 11.65 180.26 2.10 4.40 16 29 H 0.07 0.52 7.95 -2.39 -0.02 0.50 16 30 H 0.08 1.13 5.95 -2.39 -0.01 1.11 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.13 0.19 8.08 -2.39 -0.02 0.17 16 33 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.42 1.90 8.47 -92.71 -0.79 1.12 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.35 10.29 8.43 -89.69 -0.76 9.53 16 42 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.40 19.01 7.90 -92.71 -0.73 18.27 16 45 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 46 H 0.20 1.22 8.06 -2.91 -0.02 1.19 16 47 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 48 H 0.23 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -76.68 405.82 -0.73 -77.40 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -1.28 Total: 34.62 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 9.28 Total: 19.08 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -10.66 Total: -130.37 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.09 Total: -45.10 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -76.68 -0.73 -77.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167432555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.992 kcal (2) G-P(sol) polarization free energy of solvation -76.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds