Wall clock time and date at job start Tue Mar 31 2020 20:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46688 * 2 1 4 4 C 1.34260 * 125.75083 * 125.00144 * 3 2 1 5 5 C 1.38045 * 107.41537 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.41396 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99708 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00088 * 0.02798 * 6 5 4 9 9 C 1.46499 * 119.99827 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47001 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47017 * 180.02562 * 10 9 8 12 12 N 1.46902 * 109.47094 * 180.02562 * 11 10 9 13 13 C 1.46893 * 111.00230 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47481 * 179.97438 * 13 12 11 15 15 O 1.21290 * 119.99582 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00044 * 179.97438 * 14 13 12 17 17 C 1.37103 * 119.99700 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00281 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99785 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00150 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47433 * 59.99718 * 21 19 17 23 23 H 1.48503 * 109.47494 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46852 * 299.99544 * 21 19 17 25 25 C 1.41288 * 107.16979 * 359.97438 * 5 4 3 26 26 C 1.50706 * 125.98878 * 179.97438 * 25 5 4 27 27 N 1.30450 * 108.02579 * 359.71710 * 25 5 4 28 28 H 1.09000 * 109.47236 * 60.00319 * 1 2 3 29 29 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47230 * 299.99915 * 1 2 3 31 31 H 1.08999 * 109.47230 * 240.00085 * 2 1 3 32 32 H 1.09000 * 109.47236 * 119.99680 * 2 1 3 33 33 H 1.08002 * 126.29377 * 0.02562 * 4 3 2 34 34 H 0.96994 * 120.00105 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.47621 * 300.00595 * 9 8 6 36 36 H 1.09003 * 109.47299 * 60.00241 * 9 8 6 37 37 H 1.08995 * 109.47531 * 300.00349 * 10 9 8 38 38 H 1.08997 * 109.46698 * 60.00558 * 10 9 8 39 39 H 1.09001 * 109.47243 * 299.99706 * 11 10 9 40 40 H 1.08997 * 109.47147 * 60.00569 * 11 10 9 41 41 H 1.00902 * 111.00248 * 56.04500 * 12 11 10 42 42 H 1.09004 * 109.47444 * 299.99974 * 13 12 11 43 43 H 1.09005 * 109.47169 * 59.99930 * 13 12 11 44 44 H 0.97000 * 120.00536 * 359.97438 * 16 14 13 45 45 H 0.97000 * 120.00198 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.46648 * 89.99989 * 26 25 5 47 47 H 1.09001 * 109.47520 * 210.00041 * 26 25 5 48 48 H 1.08998 * 109.47119 * 330.00415 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8689 1.9126 0.8925 5 6 3.0712 3.2309 0.5365 6 6 3.9324 4.2035 1.2336 7 8 4.0251 5.3420 0.8165 8 7 4.6168 3.8307 2.3332 9 6 5.4730 4.7971 3.0256 10 6 6.1297 4.1237 4.2324 11 6 7.0233 5.1331 4.9559 12 7 7.6543 4.4864 6.1142 13 6 8.5223 5.4275 6.8345 14 6 9.1501 4.7301 8.0137 15 8 8.8995 3.5637 8.2323 16 7 9.9908 5.4022 8.8248 17 6 10.5623 4.7676 9.8973 18 1 10.3392 3.7290 10.0920 19 6 11.4286 5.4607 10.7339 20 7 11.7005 6.7243 10.4968 21 14 12.2079 4.5959 12.1947 22 1 13.0154 3.4453 11.7158 23 1 13.0847 5.5475 12.9234 24 1 11.1425 4.1075 13.1068 25 6 2.2985 3.4736 -0.6212 26 6 2.2068 4.7800 -1.3670 27 7 1.6825 2.3672 -0.9346 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3139 1.4022 1.7339 34 1 4.5431 2.9225 2.6657 35 1 6.2447 5.1533 2.3432 36 1 4.8700 5.6398 3.3639 37 1 5.3577 3.7679 4.9147 38 1 6.7326 3.2808 3.8945 39 1 7.7954 5.4892 4.2738 40 1 6.4201 5.9756 5.2938 41 1 8.1673 3.6638 5.8341 42 1 9.3045 5.7856 6.1651 43 1 7.9297 6.2723 7.1857 44 1 10.1920 6.3348 8.6494 45 1 12.3049 7.2083 11.0810 46 1 2.9789 4.8144 -2.1357 47 1 1.2253 4.8638 -1.8337 48 1 2.3500 5.6065 -0.6710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167436033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:20 Heat of formation + Delta-G solvation = -9.404891 kcal Electronic energy + Delta-G solvation = -27112.832527 eV Core-core repulsion = 23010.952238 eV Total energy + Delta-G solvation = -4101.880288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83945 -39.41632 -38.31067 -36.52801 -35.29734 -34.79879 -33.84539 -32.13705 -31.49789 -31.17063 -30.16976 -28.17429 -27.04474 -25.01949 -24.09443 -23.22069 -22.40910 -21.71638 -20.61352 -19.89603 -19.21038 -18.03379 -17.84778 -16.61529 -16.40650 -16.20405 -15.97010 -15.72692 -15.29345 -14.82593 -14.62854 -14.49841 -14.40573 -14.19198 -13.97172 -13.51710 -13.46044 -13.37331 -13.24562 -12.84304 -12.79309 -12.56182 -12.29639 -12.05933 -11.96769 -11.83016 -11.76965 -11.46596 -11.41509 -11.16926 -11.06481 -10.92588 -10.44376 -10.21540 -10.03399 -9.76121 -9.50141 -9.34686 -8.97425 -8.47200 -8.07161 -7.96021 -6.41546 -3.82594 1.09323 1.83220 1.86587 2.98847 3.20046 3.22132 3.25841 3.30109 3.81442 3.90983 4.09038 4.11405 4.29829 4.31487 4.38608 4.55686 4.69909 4.83855 4.85852 4.99011 5.05590 5.07398 5.08770 5.15184 5.20291 5.26561 5.43545 5.45713 5.48986 5.53407 5.62476 5.67297 5.69943 5.80253 5.97837 6.00522 6.05128 6.19957 6.23392 6.27187 6.37355 7.15916 7.19678 7.34722 7.54928 7.64658 8.06091 8.08163 8.61317 9.17681 9.54371 10.05785 10.76082 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.001371 C = 0.001305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.650960 B =20413.544026 C =21443.737115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.357 5.357 4 C 0.100 3.900 5 C -0.290 4.290 6 C 0.594 3.406 7 O -0.542 6.542 8 N -0.729 5.729 9 C 0.123 3.877 10 C -0.129 4.129 11 C 0.062 3.938 12 N -0.670 5.670 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.585 6.585 16 N -0.563 5.563 17 C -0.301 4.301 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.132 3.868 26 C -0.078 4.078 27 N -0.300 5.300 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.183 0.817 34 H 0.397 0.603 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.348 0.652 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.393 0.607 45 H 0.272 0.728 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.701 -9.112 -23.014 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.135 5.135 4 C -0.052 4.052 5 C -0.305 4.305 6 C 0.381 3.619 7 O -0.419 6.419 8 N -0.380 5.380 9 C -0.001 4.001 10 C -0.167 4.167 11 C -0.068 4.068 12 N -0.302 5.302 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.469 6.469 16 N -0.200 5.200 17 C -0.431 4.431 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.035 4.035 26 C -0.136 4.136 27 N -0.122 5.122 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.200 0.800 34 H 0.231 0.769 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.058 -9.556 -23.450 32.934 hybrid contribution 1.904 0.016 0.939 2.123 sum -19.153 -9.540 -22.512 31.059 Atomic orbital electron populations 1.22059 0.93294 1.03206 1.03836 1.21861 0.96580 0.76757 1.04345 1.48552 1.34177 1.10647 1.20143 1.23124 0.93060 0.93865 0.95136 1.20251 1.11905 0.94441 1.03883 1.17229 0.78565 0.86635 0.79436 1.90751 1.64966 1.20022 1.66204 1.45827 1.48002 1.15184 1.29024 1.21310 0.93541 0.91843 0.93408 1.21742 0.99970 0.99009 0.95996 1.21831 0.96882 0.96834 0.91251 1.60059 1.36995 1.08496 1.24652 1.21671 0.95338 0.95726 0.95486 1.19813 0.83721 0.87992 0.85895 1.90513 1.64725 1.16975 1.74699 1.41859 1.39920 1.13312 1.24881 1.19659 1.22865 0.97593 1.02958 0.87976 1.25259 0.97527 0.95662 0.99429 1.69603 1.36564 1.08637 1.39467 0.85914 0.78930 0.78664 0.80671 1.19934 1.20970 1.19891 1.22494 0.92644 0.95024 0.93374 1.20351 1.02544 0.90774 0.99949 1.77174 1.24923 0.96772 1.13328 0.90915 0.90360 0.91896 0.89226 0.88127 0.80049 0.76943 0.91373 0.91141 0.90184 0.91330 0.95211 0.90733 0.83242 0.93805 0.89537 0.77424 0.91806 0.90215 0.91097 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.09 37.16 0.38 -0.22 16 2 C 0.12 0.44 7.21 -4.04 -0.03 0.41 16 3 N -0.36 -2.57 3.65 -60.80 -0.22 -2.80 16 4 C 0.10 0.66 10.95 -16.56 -0.18 0.48 16 5 C -0.29 -2.78 6.13 -105.07 -0.64 -3.43 16 6 C 0.59 6.48 7.81 -12.52 -0.10 6.38 16 7 O -0.54 -7.66 14.92 5.27 0.08 -7.58 16 8 N -0.73 -6.11 5.54 -61.38 -0.34 -6.45 16 9 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 10 C -0.13 -1.17 5.59 -26.73 -0.15 -1.32 16 11 C 0.06 0.71 5.69 -3.82 -0.02 0.69 16 12 N -0.67 -10.44 6.13 -115.06 -0.70 -11.15 16 13 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 14 C 0.44 10.37 7.82 -10.99 -0.09 10.29 16 15 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 16 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 17 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 18 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 21 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C 0.13 1.37 7.26 -82.02 -0.60 0.77 16 26 C -0.08 -0.69 9.92 36.01 0.36 -0.33 16 27 N -0.30 -3.02 12.34 33.90 0.42 -2.60 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.08 8.06 -51.93 -0.42 -0.34 16 33 H 0.18 0.44 7.46 -52.49 -0.39 0.05 16 34 H 0.40 2.22 7.40 -40.82 -0.30 1.91 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.10 0.97 6.55 -51.93 -0.34 0.63 16 LS Contribution 408.30 15.07 6.15 6.15 Total: -1.00 -35.98 408.30 -7.79 -43.77 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.54 Total: 10.89 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -1.37 Total: 7.63 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.18 Total: -61.10 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.17 Total: -23.30 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.98 -7.79 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167436033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.364 kcal (2) G-P(sol) polarization free energy of solvation -35.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds