Wall clock time and date at job start Tue Mar 31 2020 20:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46688 * 2 1 4 4 C 1.34260 * 125.75083 * 125.00144 * 3 2 1 5 5 C 1.38045 * 107.41537 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.41396 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99708 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00088 * 0.02798 * 6 5 4 9 9 C 1.46499 * 119.99827 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47001 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47017 * 180.02562 * 10 9 8 12 12 N 1.46902 * 109.47094 * 180.02562 * 11 10 9 13 13 C 1.46893 * 111.00230 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47481 * 179.97438 * 13 12 11 15 15 O 1.21290 * 119.99582 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00044 * 179.97438 * 14 13 12 17 17 C 1.37103 * 119.99700 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00281 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99785 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00150 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47433 * 59.99718 * 21 19 17 23 23 H 1.48503 * 109.47494 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46852 * 299.99544 * 21 19 17 25 25 C 1.41288 * 107.16979 * 359.97438 * 5 4 3 26 26 C 1.50706 * 125.98878 * 179.97438 * 25 5 4 27 27 N 1.30450 * 108.02579 * 359.71710 * 25 5 4 28 28 H 1.09000 * 109.47236 * 60.00319 * 1 2 3 29 29 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47230 * 299.99915 * 1 2 3 31 31 H 1.08999 * 109.47230 * 240.00085 * 2 1 3 32 32 H 1.09000 * 109.47236 * 119.99680 * 2 1 3 33 33 H 1.08002 * 126.29377 * 0.02562 * 4 3 2 34 34 H 0.96994 * 120.00105 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.47621 * 300.00595 * 9 8 6 36 36 H 1.09003 * 109.47299 * 60.00241 * 9 8 6 37 37 H 1.08995 * 109.47531 * 300.00349 * 10 9 8 38 38 H 1.08997 * 109.46698 * 60.00558 * 10 9 8 39 39 H 1.09001 * 109.47243 * 299.99706 * 11 10 9 40 40 H 1.08997 * 109.47147 * 60.00569 * 11 10 9 41 41 H 1.00902 * 111.00248 * 56.04500 * 12 11 10 42 42 H 1.09004 * 109.47444 * 299.99974 * 13 12 11 43 43 H 1.09005 * 109.47169 * 59.99930 * 13 12 11 44 44 H 0.97000 * 120.00536 * 359.97438 * 16 14 13 45 45 H 0.97000 * 120.00198 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.46648 * 89.99989 * 26 25 5 47 47 H 1.09001 * 109.47520 * 210.00041 * 26 25 5 48 48 H 1.08998 * 109.47119 * 330.00415 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8689 1.9126 0.8925 5 6 3.0712 3.2309 0.5365 6 6 3.9324 4.2035 1.2336 7 8 4.0251 5.3420 0.8165 8 7 4.6168 3.8307 2.3332 9 6 5.4730 4.7971 3.0256 10 6 6.1297 4.1237 4.2324 11 6 7.0233 5.1331 4.9559 12 7 7.6543 4.4864 6.1142 13 6 8.5223 5.4275 6.8345 14 6 9.1501 4.7301 8.0137 15 8 8.8995 3.5637 8.2323 16 7 9.9908 5.4022 8.8248 17 6 10.5623 4.7676 9.8973 18 1 10.3392 3.7290 10.0920 19 6 11.4286 5.4607 10.7339 20 7 11.7005 6.7243 10.4968 21 14 12.2079 4.5959 12.1947 22 1 13.0154 3.4453 11.7158 23 1 13.0847 5.5475 12.9234 24 1 11.1425 4.1075 13.1068 25 6 2.2985 3.4736 -0.6212 26 6 2.2068 4.7800 -1.3670 27 7 1.6825 2.3672 -0.9346 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3139 1.4022 1.7339 34 1 4.5431 2.9225 2.6657 35 1 6.2447 5.1533 2.3432 36 1 4.8700 5.6398 3.3639 37 1 5.3577 3.7679 4.9147 38 1 6.7326 3.2808 3.8945 39 1 7.7954 5.4892 4.2738 40 1 6.4201 5.9756 5.2938 41 1 8.1673 3.6638 5.8341 42 1 9.3045 5.7856 6.1651 43 1 7.9297 6.2723 7.1857 44 1 10.1920 6.3348 8.6494 45 1 12.3049 7.2083 11.0810 46 1 2.9789 4.8144 -2.1357 47 1 1.2253 4.8638 -1.8337 48 1 2.3500 5.6065 -0.6710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167436033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:19 Heat of formation + Delta-G solvation = -37.757612 kcal Electronic energy + Delta-G solvation = -27114.061993 eV Core-core repulsion = 23010.952238 eV Total energy + Delta-G solvation = -4103.109754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.44417 -40.24295 -40.09461 -37.58743 -36.11416 -35.75583 -35.52940 -33.29310 -32.85087 -32.12152 -30.90832 -28.87533 -28.33630 -26.48727 -25.00148 -24.12252 -23.01713 -22.55749 -21.29864 -21.06252 -20.52469 -19.88370 -18.59817 -17.83971 -17.24153 -17.17967 -16.74770 -16.65335 -16.51562 -16.19492 -15.93855 -15.50651 -15.25094 -15.10400 -15.05384 -14.86022 -14.52039 -14.23431 -14.01148 -13.86744 -13.53246 -13.33012 -13.19895 -13.14128 -13.02216 -12.84343 -12.82898 -12.63721 -12.41379 -12.37547 -12.33223 -12.11037 -11.79516 -11.76233 -11.48542 -10.87255 -10.37855 -10.33448 -10.12294 -10.00519 -9.59553 -9.30645 -8.45220 -5.94304 0.53349 1.10643 1.41296 1.41732 1.43225 1.54187 2.06700 2.24004 2.32294 2.46573 2.98484 3.22164 3.34440 3.55788 3.70741 3.95758 4.05440 4.07100 4.08908 4.21164 4.22838 4.32963 4.35636 4.40646 4.48725 4.51657 4.61484 4.62999 4.74553 4.75825 4.78039 4.79335 4.85801 4.99197 5.01499 5.21788 5.22672 5.26763 5.41936 5.49890 5.54649 5.90347 5.92094 6.11701 6.44623 6.51990 6.61290 6.69943 7.13560 7.34152 7.57593 8.12531 8.71878 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.001371 C = 0.001305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.650960 B =20413.544026 C =21443.737115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.355 5.355 4 C 0.123 3.877 5 C -0.321 4.321 6 C 0.592 3.408 7 O -0.584 6.584 8 N -0.716 5.716 9 C 0.130 3.870 10 C -0.114 4.114 11 C 0.062 3.938 12 N -0.682 5.682 13 C 0.064 3.936 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.573 5.573 17 C -0.337 4.337 18 H 0.080 0.920 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.272 1.272 25 C 0.112 3.888 26 C -0.074 4.074 27 N -0.328 5.328 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.138 0.862 33 H 0.228 0.772 34 H 0.413 0.587 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.346 0.654 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.701 -10.633 -22.655 31.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.003 4.003 3 N -0.133 5.133 4 C -0.030 4.030 5 C -0.336 4.336 6 C 0.380 3.620 7 O -0.465 6.465 8 N -0.367 5.367 9 C 0.005 3.995 10 C -0.152 4.152 11 C -0.067 4.067 12 N -0.315 5.315 13 C -0.069 4.069 14 C 0.225 3.775 15 O -0.510 6.510 16 N -0.211 5.211 17 C -0.466 4.466 18 H 0.098 0.902 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.817 3.183 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.055 4.055 26 C -0.132 4.132 27 N -0.150 5.150 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.156 0.844 33 H 0.244 0.756 34 H 0.249 0.751 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.164 0.836 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.078 -11.093 -23.106 33.185 hybrid contribution 1.835 0.409 0.784 2.037 sum -19.243 -10.684 -22.322 31.348 Atomic orbital electron populations 1.22026 0.93578 1.04189 1.02233 1.22279 0.96397 0.75062 1.06571 1.48918 1.33669 1.11326 1.19342 1.23727 0.91395 0.92726 0.95187 1.20260 1.13049 0.95757 1.04489 1.17464 0.78533 0.86304 0.79653 1.90725 1.66505 1.21798 1.67490 1.45660 1.47083 1.15851 1.28151 1.21167 0.93278 0.91798 0.93226 1.21578 0.99578 0.98569 0.95489 1.21915 0.97254 0.97356 0.90219 1.60060 1.36488 1.08418 1.26523 1.21536 0.96192 0.95643 0.93496 1.20892 0.82419 0.87653 0.86569 1.90479 1.65683 1.18898 1.75896 1.41940 1.40607 1.13518 1.24992 1.19657 1.24783 0.97220 1.04948 0.90202 1.26043 0.97327 0.96321 1.01522 1.69667 1.36697 1.09455 1.40302 0.84981 0.78081 0.77852 0.77373 1.19615 1.19567 1.19725 1.22713 0.93233 0.95441 0.94132 1.20284 1.03114 0.90246 0.99595 1.77106 1.25676 0.97387 1.14856 0.93211 0.88079 0.92748 0.88453 0.84440 0.75569 0.75078 0.92018 0.92037 0.90115 0.90244 0.94126 0.90391 0.83578 0.91576 0.87907 0.76981 0.91305 0.90031 0.90193 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 10.09 71.98 0.73 -0.17 16 2 C 0.12 0.49 7.21 86.38 0.62 1.11 16 3 N -0.35 -4.44 3.65 -346.28 -1.26 -5.70 16 4 C 0.12 1.30 10.95 84.28 0.92 2.22 16 5 C -0.32 -5.92 6.13 -20.15 -0.12 -6.05 16 6 C 0.59 12.67 7.81 86.66 0.68 13.35 16 7 O -0.58 -17.02 14.92 -4.06 -0.06 -17.08 16 8 N -0.72 -10.79 5.54 -466.37 -2.59 -13.37 16 9 C 0.13 2.17 5.67 86.38 0.49 2.66 16 10 C -0.11 -1.80 5.59 30.59 0.17 -1.63 16 11 C 0.06 1.28 5.69 86.30 0.49 1.77 16 12 N -0.68 -20.07 6.13 -517.93 -3.17 -23.25 16 13 C 0.06 2.13 6.17 85.56 0.53 2.66 16 14 C 0.44 20.55 7.82 87.66 0.69 21.24 16 15 O -0.62 -34.00 15.78 -3.06 -0.05 -34.04 16 16 N -0.57 -29.28 5.29 -306.99 -1.62 -30.90 16 17 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 20 N -0.92 -49.52 13.05 21.66 0.28 -49.24 16 21 Si 0.99 42.58 29.55 68.60 2.03 44.60 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 C 0.11 2.36 7.26 43.52 0.32 2.67 16 26 C -0.07 -1.41 9.92 71.24 0.71 -0.70 16 27 N -0.33 -6.52 12.34 -46.67 -0.58 -7.09 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.14 -0.40 8.06 -2.39 -0.02 -0.42 16 33 H 0.23 0.04 7.46 -2.91 -0.02 0.02 16 34 H 0.41 3.40 7.40 -92.71 -0.69 2.71 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.35 10.48 8.43 -89.69 -0.76 9.72 16 42 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 44 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 45 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 47 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.08 1.78 6.55 -2.39 -0.02 1.77 16 Total: -1.00 -80.22 408.30 -0.70 -80.92 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -1.17 Total: 34.45 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 7.49 Total: 20.70 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -8.94 Total: -129.55 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -0.11 Total: -51.12 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -80.22 -0.70 -80.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167436033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.157 kcal (2) G-P(sol) polarization free energy of solvation -80.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds