Wall clock time and date at job start Tue Mar 31 2020 20:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47366 * 2 1 4 4 N 1.39930 * 125.75865 * 270.00413 * 3 2 1 5 5 C 1.30448 * 108.90321 * 180.02562 * 4 3 2 6 6 C 1.41290 * 108.01917 * 359.97438 * 5 4 3 7 7 C 1.47428 * 126.41564 * 180.02562 * 6 5 4 8 8 O 1.21602 * 120.00252 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99946 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99997 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46997 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46968 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47097 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99889 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46948 * 179.97438 * 14 13 12 16 16 O 1.21294 * 120.00021 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00028 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00278 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99727 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00630 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99465 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00399 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47193 * 59.99966 * 22 20 18 24 24 H 1.48501 * 109.46898 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46953 * 299.99513 * 22 20 18 26 26 C 1.34259 * 125.75316 * 90.00408 * 3 2 1 27 27 C 1.50706 * 126.29028 * 0.25935 * 26 3 2 28 28 H 1.09000 * 109.46665 * 299.99608 * 1 2 3 29 29 H 1.08997 * 109.47594 * 59.99319 * 1 2 3 30 30 H 1.08998 * 109.47601 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47102 * 240.00235 * 2 1 3 32 32 H 1.08997 * 109.47594 * 120.00681 * 2 1 3 33 33 H 1.07998 * 125.99088 * 180.02562 * 5 4 3 34 34 H 0.97000 * 120.00137 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47084 * 299.98834 * 10 9 7 36 36 H 1.08992 * 109.47698 * 59.99282 * 10 9 7 37 37 H 1.09001 * 109.46942 * 299.99315 * 11 10 9 38 38 H 1.08992 * 109.47292 * 59.99267 * 11 10 9 39 39 H 1.09001 * 109.46795 * 299.99485 * 12 11 10 40 40 H 1.08992 * 109.47647 * 59.99565 * 12 11 10 41 41 H 1.00895 * 111.00084 * 56.03480 * 13 12 11 42 42 H 1.08994 * 109.47062 * 299.99449 * 14 13 12 43 43 H 1.09004 * 109.46806 * 59.99961 * 14 13 12 44 44 H 0.96995 * 120.00460 * 359.97438 * 17 15 14 45 45 H 0.97006 * 119.99843 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.47410 * 269.71497 * 27 26 3 47 47 H 1.09006 * 109.46750 * 29.72038 * 27 26 3 48 48 H 1.09002 * 109.46893 * 149.71614 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.2909 2.1521 -1.1355 5 6 2.7076 3.3289 -0.7573 6 6 2.7171 3.3560 0.6553 7 6 3.1184 4.4911 1.5063 8 8 3.0808 4.3864 2.7172 9 7 3.5260 5.6452 0.9420 10 6 3.9254 6.7729 1.7876 11 6 4.3418 7.9505 0.9039 12 6 4.7583 9.1285 1.7870 13 7 5.1575 10.2594 0.9386 14 6 5.5641 11.4115 1.7541 15 6 5.9664 12.5491 0.8513 16 8 5.9194 12.4132 -0.3531 17 7 6.3793 13.7170 1.3820 18 6 6.7458 14.7518 0.5607 19 1 6.7032 14.6310 -0.5117 20 6 7.1710 15.9561 1.1079 21 7 7.2214 16.1035 2.4127 22 14 7.6697 17.3662 -0.0113 23 1 6.5191 17.7482 -0.8689 24 1 8.0801 18.5311 0.8132 25 1 8.8056 16.9404 -0.8677 26 6 2.2799 2.1207 1.0896 27 6 2.1303 1.6808 2.5232 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9943 4.1406 -1.4095 34 1 3.5557 5.7288 -0.0239 35 1 3.0867 7.0697 2.4174 36 1 4.7648 6.4763 2.4164 37 1 5.1806 7.6535 0.2744 38 1 3.5027 8.2472 0.2748 39 1 3.9191 9.4253 2.4162 40 1 5.5972 8.8320 2.4164 41 1 4.4178 10.5114 0.3004 42 1 4.7305 11.7237 2.3831 43 1 6.4090 11.1312 2.3833 44 1 6.4173 13.8256 2.3451 45 1 7.5179 16.9444 2.7948 46 1 1.1258 1.9183 2.8733 47 1 2.2944 0.6054 2.5922 48 1 2.8627 2.2005 3.1410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169024226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:27 Heat of formation + Delta-G solvation = -10.226429 kcal Electronic energy + Delta-G solvation = -27142.577351 eV Core-core repulsion = 23040.661438 eV Total energy + Delta-G solvation = -4101.915913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89783 -39.40262 -38.28828 -36.48499 -35.21586 -34.77055 -33.81725 -32.57118 -31.60400 -31.13956 -30.01911 -27.95286 -26.90268 -25.01629 -24.31843 -23.34978 -22.48237 -21.67298 -20.57624 -19.90409 -19.18683 -17.94633 -17.80588 -16.50027 -16.39753 -16.06293 -15.89812 -15.69324 -15.33355 -15.14369 -14.57096 -14.46126 -14.30127 -14.14991 -13.94821 -13.57540 -13.51531 -13.44641 -13.34442 -12.96442 -12.84174 -12.74702 -12.50049 -12.02753 -11.95007 -11.80645 -11.73703 -11.44883 -11.38938 -11.21834 -11.04236 -10.89599 -10.42762 -10.19686 -10.03991 -9.86040 -9.48262 -9.32351 -8.91873 -8.44759 -8.04487 -7.94026 -6.39863 -3.80751 1.13235 1.81197 1.84705 3.04465 3.21669 3.23283 3.27221 3.31721 3.90697 3.93062 4.09695 4.12031 4.31654 4.33928 4.37688 4.48799 4.62600 4.77734 4.87412 4.90289 4.97842 5.05132 5.10535 5.10867 5.16786 5.22720 5.28367 5.39247 5.47589 5.49550 5.56005 5.63909 5.69801 5.82431 5.99952 6.00615 6.04166 6.09052 6.28568 6.29351 6.41569 7.12794 7.22533 7.36454 7.56725 7.67659 8.08017 8.10068 8.63284 9.19591 9.56311 10.07869 10.77821 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040278 B = 0.001299 C = 0.001266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.998786 B =21557.126940 C =22113.987445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.360 5.360 4 N -0.297 5.297 5 C 0.084 3.916 6 C -0.300 4.300 7 C 0.596 3.404 8 O -0.550 6.550 9 N -0.726 5.726 10 C 0.124 3.876 11 C -0.130 4.130 12 C 0.063 3.937 13 N -0.670 5.670 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.563 5.563 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.159 3.841 27 C -0.100 4.100 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.190 0.810 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.883 -32.614 0.587 35.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.140 5.140 4 N -0.116 5.116 5 C -0.104 4.104 6 C -0.315 4.315 7 C 0.384 3.616 8 O -0.429 6.429 9 N -0.377 5.377 10 C 0.000 4.000 11 C -0.168 4.168 12 C -0.068 4.068 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C 0.026 3.974 27 C -0.158 4.158 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.207 0.793 34 H 0.234 0.766 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.548 -33.718 -0.342 35.978 hybrid contribution -0.354 1.756 0.525 1.867 sum -12.902 -31.961 0.183 34.468 Atomic orbital electron populations 1.22187 0.93782 1.03435 1.03502 1.21803 0.95630 0.77453 1.04896 1.48596 1.49753 1.12312 1.03346 1.77191 1.22378 1.04479 1.07532 1.24043 0.96913 0.95652 0.93816 1.19984 1.21464 0.96520 0.93509 1.17167 0.76171 0.81416 0.86879 1.90733 1.55344 1.82709 1.14155 1.45742 1.68234 1.13260 1.10451 1.21300 1.00332 0.85098 0.93282 1.21748 1.02266 0.94074 0.98696 1.21828 0.99163 0.90965 0.94803 1.60054 1.45031 1.06158 1.18957 1.21668 1.00372 0.90918 0.95245 1.19821 0.84601 0.83947 0.89053 1.90518 1.58934 1.82358 1.15021 1.41853 1.57689 1.10931 1.09526 1.19662 1.40614 0.90577 0.92171 0.87976 1.25256 0.97491 0.98906 0.96221 1.69609 1.47625 1.27056 1.10044 0.85917 0.79166 0.79758 0.79370 1.19933 1.20981 1.19876 1.21542 0.94012 0.90646 0.91166 1.20704 1.05149 1.01535 0.88394 0.91818 0.91405 0.90128 0.88212 0.88528 0.79323 0.76601 0.91440 0.91208 0.90102 0.91255 0.95256 0.90772 0.83204 0.93827 0.89549 0.77440 0.91829 0.89497 0.91169 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.24 37.16 0.38 -0.19 16 2 C 0.12 0.50 6.93 -4.05 -0.03 0.47 16 3 N -0.36 -2.82 3.58 -56.61 -0.20 -3.02 16 4 N -0.30 -2.83 12.50 30.86 0.39 -2.45 16 5 C 0.08 0.70 11.50 -16.98 -0.20 0.51 16 6 C -0.30 -2.89 6.13 -105.07 -0.64 -3.53 16 7 C 0.60 6.51 7.81 -12.52 -0.10 6.41 16 8 O -0.55 -7.54 14.84 5.28 0.08 -7.46 16 9 N -0.73 -6.42 5.55 -61.38 -0.34 -6.76 16 10 C 0.12 1.16 5.67 -4.04 -0.02 1.14 16 11 C -0.13 -1.23 5.59 -26.73 -0.15 -1.38 16 12 C 0.06 0.73 5.69 -3.82 -0.02 0.71 16 13 N -0.67 -10.64 6.13 -115.06 -0.70 -11.34 16 14 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 15 C 0.44 10.47 7.82 -10.99 -0.09 10.39 16 16 O -0.58 -15.95 15.78 5.54 0.09 -15.86 16 17 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 18 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 22 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.16 1.36 7.01 -81.60 -0.57 0.78 16 27 C -0.10 -0.63 9.56 36.01 0.34 -0.28 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.18 7.01 -51.93 -0.36 -0.18 16 33 H 0.19 0.97 7.50 -52.49 -0.39 0.58 16 34 H 0.40 2.58 7.43 -40.82 -0.30 2.28 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.35 5.66 8.43 -39.29 -0.33 5.33 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.26 7.05 -51.93 -0.37 -0.11 16 48 H 0.11 0.88 6.51 -51.93 -0.34 0.54 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -35.80 406.02 -7.72 -43.52 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.43 Total: 11.68 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -1.36 Total: 7.82 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.20 Total: -61.93 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.17 Total: -23.32 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.80 -7.72 -43.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169024226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.295 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds