Wall clock time and date at job start Tue Mar 31 2020 20:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47366 * 2 1 4 4 N 1.39930 * 125.75865 * 270.00413 * 3 2 1 5 5 C 1.30448 * 108.90321 * 180.02562 * 4 3 2 6 6 C 1.41290 * 108.01917 * 359.97438 * 5 4 3 7 7 C 1.47428 * 126.41564 * 180.02562 * 6 5 4 8 8 O 1.21602 * 120.00252 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99946 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99997 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46997 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46968 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47097 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99889 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46948 * 179.97438 * 14 13 12 16 16 O 1.21294 * 120.00021 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00028 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00278 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99727 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00630 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99465 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00399 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47193 * 59.99966 * 22 20 18 24 24 H 1.48501 * 109.46898 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46953 * 299.99513 * 22 20 18 26 26 C 1.34259 * 125.75316 * 90.00408 * 3 2 1 27 27 C 1.50706 * 126.29028 * 0.25935 * 26 3 2 28 28 H 1.09000 * 109.46665 * 299.99608 * 1 2 3 29 29 H 1.08997 * 109.47594 * 59.99319 * 1 2 3 30 30 H 1.08998 * 109.47601 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47102 * 240.00235 * 2 1 3 32 32 H 1.08997 * 109.47594 * 120.00681 * 2 1 3 33 33 H 1.07998 * 125.99088 * 180.02562 * 5 4 3 34 34 H 0.97000 * 120.00137 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47084 * 299.98834 * 10 9 7 36 36 H 1.08992 * 109.47698 * 59.99282 * 10 9 7 37 37 H 1.09001 * 109.46942 * 299.99315 * 11 10 9 38 38 H 1.08992 * 109.47292 * 59.99267 * 11 10 9 39 39 H 1.09001 * 109.46795 * 299.99485 * 12 11 10 40 40 H 1.08992 * 109.47647 * 59.99565 * 12 11 10 41 41 H 1.00895 * 111.00084 * 56.03480 * 13 12 11 42 42 H 1.08994 * 109.47062 * 299.99449 * 14 13 12 43 43 H 1.09004 * 109.46806 * 59.99961 * 14 13 12 44 44 H 0.96995 * 120.00460 * 359.97438 * 17 15 14 45 45 H 0.97006 * 119.99843 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.47410 * 269.71497 * 27 26 3 47 47 H 1.09006 * 109.46750 * 29.72038 * 27 26 3 48 48 H 1.09002 * 109.46893 * 149.71614 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.2909 2.1521 -1.1355 5 6 2.7076 3.3289 -0.7573 6 6 2.7171 3.3560 0.6553 7 6 3.1184 4.4911 1.5063 8 8 3.0808 4.3864 2.7172 9 7 3.5260 5.6452 0.9420 10 6 3.9254 6.7729 1.7876 11 6 4.3418 7.9505 0.9039 12 6 4.7583 9.1285 1.7870 13 7 5.1575 10.2594 0.9386 14 6 5.5641 11.4115 1.7541 15 6 5.9664 12.5491 0.8513 16 8 5.9194 12.4132 -0.3531 17 7 6.3793 13.7170 1.3820 18 6 6.7458 14.7518 0.5607 19 1 6.7032 14.6310 -0.5117 20 6 7.1710 15.9561 1.1079 21 7 7.2214 16.1035 2.4127 22 14 7.6697 17.3662 -0.0113 23 1 6.5191 17.7482 -0.8689 24 1 8.0801 18.5311 0.8132 25 1 8.8056 16.9404 -0.8677 26 6 2.2799 2.1207 1.0896 27 6 2.1303 1.6808 2.5232 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9943 4.1406 -1.4095 34 1 3.5557 5.7288 -0.0239 35 1 3.0867 7.0697 2.4174 36 1 4.7648 6.4763 2.4164 37 1 5.1806 7.6535 0.2744 38 1 3.5027 8.2472 0.2748 39 1 3.9191 9.4253 2.4162 40 1 5.5972 8.8320 2.4164 41 1 4.4178 10.5114 0.3004 42 1 4.7305 11.7237 2.3831 43 1 6.4090 11.1312 2.3833 44 1 6.4173 13.8256 2.3451 45 1 7.5179 16.9444 2.7948 46 1 1.1258 1.9183 2.8733 47 1 2.2944 0.6054 2.5922 48 1 2.8627 2.2005 3.1410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169024226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:26 Heat of formation + Delta-G solvation = -38.221081 kcal Electronic energy + Delta-G solvation = -27143.791290 eV Core-core repulsion = 23040.661438 eV Total energy + Delta-G solvation = -4103.129852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.50552 -40.24471 -40.09566 -37.58138 -36.09185 -35.72530 -35.46572 -33.27975 -33.13853 -32.45976 -30.59825 -28.81499 -28.07112 -26.45006 -25.06897 -24.36025 -23.26458 -22.54197 -21.22779 -21.04795 -20.50266 -19.88443 -18.56331 -17.82557 -17.22785 -17.05840 -16.70551 -16.68059 -16.45308 -16.13962 -15.95261 -15.76238 -15.34575 -15.08766 -14.96881 -14.77735 -14.45244 -14.25468 -14.08703 -13.91058 -13.53249 -13.39208 -13.31778 -13.24592 -13.13529 -12.89250 -12.83216 -12.63342 -12.41447 -12.37667 -12.26294 -12.11055 -11.82322 -11.79901 -11.48779 -10.88196 -10.43139 -10.33628 -10.12187 -10.00551 -9.57694 -9.30437 -8.45404 -5.94379 0.49133 1.15098 1.35965 1.41126 1.42945 1.53952 2.06584 2.26787 2.33483 2.46849 2.98606 3.22028 3.47714 3.55516 3.57947 3.93885 3.97572 4.03923 4.06325 4.18627 4.20423 4.23786 4.33108 4.35930 4.48616 4.51709 4.61263 4.62728 4.63964 4.72942 4.75295 4.79938 4.84798 4.97172 5.09027 5.18651 5.22137 5.27193 5.41715 5.41870 5.53426 5.90239 5.90711 6.11988 6.44014 6.50421 6.61327 6.67139 7.13556 7.32894 7.57467 8.12668 8.71758 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040278 B = 0.001299 C = 0.001266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.998786 B =21557.126940 C =22113.987445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.358 5.358 4 N -0.325 5.325 5 C 0.086 3.914 6 C -0.325 4.325 7 C 0.593 3.407 8 O -0.585 6.585 9 N -0.717 5.717 10 C 0.131 3.869 11 C -0.116 4.116 12 C 0.063 3.937 13 N -0.684 5.684 14 C 0.064 3.936 15 C 0.436 3.564 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.337 4.337 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.155 3.845 27 C -0.096 4.096 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.214 0.786 34 H 0.412 0.588 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.345 0.655 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.296 -33.700 0.841 36.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.007 4.007 3 N -0.137 5.137 4 N -0.144 5.144 5 C -0.102 4.102 6 C -0.340 4.340 7 C 0.382 3.618 8 O -0.467 6.467 9 N -0.368 5.368 10 C 0.007 3.993 11 C -0.154 4.154 12 C -0.066 4.066 13 N -0.316 5.316 14 C -0.068 4.068 15 C 0.224 3.776 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.097 0.903 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.197 1.197 26 C 0.021 3.979 27 C -0.154 4.154 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.230 0.770 34 H 0.248 0.752 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.118 0.882 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.969 -34.827 -0.094 37.163 hybrid contribution -0.260 1.991 0.448 2.057 sum -13.230 -32.835 0.353 35.402 Atomic orbital electron populations 1.22151 0.93203 1.04625 1.02322 1.22190 0.96105 0.75894 1.06490 1.48904 1.49014 1.13184 1.02639 1.77138 1.23354 1.05160 1.08773 1.24439 0.96060 0.96005 0.93683 1.20056 1.23127 0.96783 0.94020 1.17396 0.75777 0.82019 0.86595 1.90710 1.57023 1.83377 1.15542 1.45651 1.67437 1.12614 1.11117 1.21166 0.99895 0.85092 0.93161 1.21592 1.02420 0.93146 0.98247 1.21906 0.99845 0.90055 0.94810 1.60056 1.45576 1.06314 1.19668 1.21534 1.01805 0.89276 0.94194 1.20909 0.82709 0.84605 0.89382 1.90485 1.60126 1.83180 1.17210 1.41927 1.58316 1.11281 1.09476 1.19655 1.42939 0.92354 0.91683 0.90273 1.26034 0.96739 1.00662 0.97706 1.69671 1.47454 1.27880 1.11113 0.84991 0.78721 0.76927 0.77716 1.19647 1.19487 1.19725 1.21910 0.93196 0.90580 0.92200 1.20717 1.04841 1.03122 0.86684 0.92180 0.93314 0.87741 0.87659 0.85928 0.76953 0.75179 0.91862 0.91851 0.90298 0.90461 0.94022 0.90271 0.83623 0.91519 0.87838 0.76963 0.91291 0.88822 0.88232 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 71.98 0.74 -0.12 16 2 C 0.11 0.72 6.93 86.38 0.60 1.32 16 3 N -0.36 -5.23 3.58 -333.01 -1.19 -6.42 16 4 N -0.33 -6.00 12.50 -56.28 -0.70 -6.70 16 5 C 0.09 1.38 11.50 85.65 0.99 2.37 16 6 C -0.33 -6.14 6.13 -20.15 -0.12 -6.26 16 7 C 0.59 12.84 7.81 86.66 0.68 13.52 16 8 O -0.58 -16.19 14.84 -4.04 -0.06 -16.25 16 9 N -0.72 -12.09 5.55 -466.38 -2.59 -14.68 16 10 C 0.13 2.31 5.67 86.38 0.49 2.80 16 11 C -0.12 -2.01 5.59 30.60 0.17 -1.84 16 12 C 0.06 1.36 5.69 86.30 0.49 1.85 16 13 N -0.68 -20.81 6.13 -517.93 -3.17 -23.98 16 14 C 0.06 2.19 6.17 85.56 0.53 2.71 16 15 C 0.44 20.84 7.82 87.66 0.69 21.52 16 16 O -0.62 -34.62 15.78 -3.07 -0.05 -34.67 16 17 N -0.57 -29.56 5.29 -306.99 -1.62 -31.18 16 18 C -0.34 -19.25 9.68 84.04 0.81 -18.43 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -49.84 13.05 21.66 0.28 -49.55 16 22 Si 0.99 43.00 29.55 68.60 2.03 45.02 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 C 0.16 2.54 7.01 42.14 0.30 2.83 16 27 C -0.10 -1.11 9.56 71.24 0.68 -0.43 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.12 0.13 7.01 -2.39 -0.02 0.11 16 33 H 0.21 1.95 7.50 -2.91 -0.02 1.93 16 34 H 0.41 4.82 7.43 -92.71 -0.69 4.13 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 41 H 0.35 10.89 8.43 -89.70 -0.76 10.14 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.10 3.19 8.14 -2.39 -0.02 3.18 16 44 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 45 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 46 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.10 0.51 7.05 -2.38 -0.02 0.49 16 48 H 0.09 1.44 6.51 -2.39 -0.02 1.42 16 Total: -1.00 -78.22 406.02 -0.75 -78.97 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -1.17 Total: 37.74 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 7.50 Total: 21.70 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -9.00 Total: -132.51 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -0.11 Total: -50.92 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -78.22 -0.75 -78.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169024226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.753 kcal (2) G-P(sol) polarization free energy of solvation -78.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds