Wall clock time and date at job start Tue Mar 31 2020 19:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 O 1.21280 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99815 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99939 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47343 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47233 * 179.97438 * 9 8 7 11 11 N 1.46899 * 109.47035 * 179.97438 * 10 9 8 12 12 C 1.46899 * 111.00154 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47470 * 180.02562 * 12 11 10 14 14 O 1.21294 * 119.99956 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00141 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99623 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00508 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99667 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00172 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 120.00054 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46832 * 90.00372 * 20 18 16 22 22 H 1.48501 * 109.47006 * 210.00148 * 20 18 16 23 23 H 1.48492 * 109.47093 * 330.00359 * 20 18 16 24 24 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 25 25 C 1.34950 * 126.04099 * 34.71284 * 24 2 1 26 26 C 1.35315 * 107.74423 * 179.83807 * 25 24 2 27 27 C 1.39871 * 107.92375 * 0.42973 * 26 25 24 28 28 N 1.30831 * 108.19955 * 359.73088 * 27 26 25 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 33 33 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 34 34 H 0.96998 * 120.00301 * 0.02562 * 7 5 4 35 35 H 1.09003 * 109.47209 * 299.99513 * 8 7 5 36 36 H 1.09000 * 109.47689 * 59.99911 * 8 7 5 37 37 H 1.09000 * 109.46872 * 300.00418 * 9 8 7 38 38 H 1.09001 * 109.46455 * 59.99878 * 9 8 7 39 39 H 1.09002 * 109.47076 * 300.00008 * 10 9 8 40 40 H 1.09000 * 109.47484 * 60.00185 * 10 9 8 41 41 H 1.00903 * 111.00057 * 56.05388 * 11 10 9 42 42 H 1.09005 * 109.47388 * 300.00355 * 12 11 10 43 43 H 1.09006 * 109.46811 * 60.00324 * 12 11 10 44 44 H 0.96998 * 119.99719 * 0.02562 * 15 13 12 45 45 H 0.96996 * 120.00517 * 179.97438 * 19 18 16 46 46 H 1.07998 * 126.12520 * 0.02562 * 25 24 2 47 47 H 1.07999 * 126.03675 * 180.16099 * 26 25 24 48 48 H 1.07996 * 125.89659 * 179.71517 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0118 1.0874 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.5984 0.3654 -4.8932 9 6 2.1094 -0.3553 -6.1424 10 6 1.7046 0.4348 -7.3884 11 7 2.1958 -0.2568 -8.5878 12 6 1.8243 0.4745 -9.8064 13 6 2.3435 -0.2638 -11.0133 14 8 2.9617 -1.2977 -10.8721 15 7 2.1209 0.2249 -12.2495 16 6 2.5937 -0.4466 -13.3473 17 1 3.1448 -1.3667 -13.2216 18 6 2.3646 0.0574 -14.6217 19 7 2.8182 -0.5858 -15.6741 20 14 1.4119 1.6495 -14.8393 21 1 2.3550 2.7966 -14.8250 22 1 0.6880 1.6200 -16.1355 23 1 0.4356 1.7975 -13.7302 24 7 2.0183 -0.6906 1.1962 25 6 1.4372 -1.7526 1.7927 26 6 2.1966 -2.0928 2.8597 27 6 3.2734 -1.2024 2.9231 28 7 3.1676 -0.3615 1.9264 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7995 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 2.4893 -1.2154 -3.7907 35 1 0.5121 0.4436 -4.9373 36 1 2.0330 1.3639 -4.8470 37 1 3.1957 -0.4332 -6.0980 38 1 1.6750 -1.3539 -6.1888 39 1 0.6182 0.5123 -7.4325 40 1 2.1385 1.4337 -7.3422 41 1 1.8592 -1.2075 -8.6203 42 1 0.7387 0.5516 -9.8674 43 1 2.2585 1.4739 -9.7770 44 1 1.6268 1.0519 -12.3623 45 1 2.6581 -0.2342 -16.5637 46 1 0.5304 -2.2447 1.4736 47 1 2.0028 -2.9053 3.5443 48 1 4.0567 -1.2080 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170579188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:33 Heat of formation + Delta-G solvation = 5.766690 kcal Electronic energy + Delta-G solvation = -27001.337572 eV Core-core repulsion = 22900.115173 eV Total energy + Delta-G solvation = -4101.222399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65694 -40.27164 -38.54782 -36.91007 -35.83120 -34.99193 -33.93470 -31.90677 -31.61764 -30.71117 -30.19806 -28.68718 -27.13494 -24.93539 -23.85515 -22.99880 -21.87264 -21.46546 -20.99223 -20.17781 -19.39864 -18.37718 -18.05315 -17.04046 -16.63112 -16.55669 -15.94703 -15.87218 -15.31987 -15.18268 -15.03203 -14.75515 -14.33036 -14.17177 -14.11578 -13.75144 -13.52382 -13.41683 -13.27164 -13.10800 -12.93591 -12.47455 -12.39123 -12.17022 -12.03081 -11.96304 -11.76976 -11.74430 -11.59352 -11.22571 -11.07921 -11.06857 -10.61717 -10.35549 -9.99946 -9.84202 -9.59892 -9.51682 -9.02590 -8.64067 -8.23851 -8.18872 -6.33463 -3.85117 1.47686 1.94648 2.12329 2.46703 2.77761 3.00512 3.05284 3.13451 3.70746 3.90879 4.00779 4.08222 4.08447 4.26539 4.40374 4.52948 4.59944 4.67658 4.72388 4.83994 4.88657 4.91385 4.97489 5.17541 5.19216 5.23759 5.27053 5.28398 5.36554 5.43559 5.48684 5.58363 5.61080 5.64459 5.76532 5.83332 5.87868 5.92918 6.01394 6.24946 6.60273 6.98233 7.01498 7.31979 7.49921 7.55719 7.70778 8.11806 8.57134 8.92356 9.39830 9.79704 10.79623 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039366 B = 0.001252 C = 0.001230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.107872 B =22351.261040 C =22759.583812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.176 3.824 3 H 0.112 0.888 4 C -0.155 4.155 5 C 0.520 3.480 6 O -0.537 6.537 7 N -0.726 5.726 8 C 0.120 3.880 9 C -0.130 4.130 10 C 0.063 3.937 11 N -0.669 5.669 12 C 0.048 3.952 13 C 0.449 3.551 14 O -0.566 6.566 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.270 1.270 24 N -0.368 5.368 25 C 0.055 3.945 26 C -0.276 4.276 27 C 0.043 3.957 28 N -0.297 5.297 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.404 0.596 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.350 0.650 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.371 0.629 45 H 0.274 0.726 46 H 0.172 0.828 47 H 0.146 0.854 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 0.324 34.823 35.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.130 0.870 4 C -0.196 4.196 5 C 0.305 3.695 6 O -0.415 6.415 7 N -0.378 5.378 8 C -0.004 4.004 9 C -0.168 4.168 10 C -0.068 4.068 11 N -0.302 5.302 12 C -0.085 4.085 13 C 0.235 3.765 14 O -0.448 6.448 15 N -0.229 5.229 16 C -0.435 4.435 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 N -0.151 5.151 25 C -0.091 4.091 26 C -0.306 4.306 27 C -0.143 4.143 28 N -0.118 5.118 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.170 0.830 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.189 0.811 47 H 0.164 0.836 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.275 1.713 34.053 34.502 hybrid contribution -1.769 -0.154 -0.120 1.780 sum -7.044 1.559 33.934 34.692 Atomic orbital electron populations 1.22331 0.92081 1.03063 1.05187 1.20920 0.95308 0.96965 0.79408 0.87039 1.22085 1.04341 1.00784 0.92433 1.20227 0.79249 0.85568 0.84407 1.90712 1.39846 1.24324 1.86578 1.45999 1.57824 1.28063 1.05865 1.21363 1.00366 0.95603 0.83050 1.21750 1.02889 0.99551 0.92644 1.21827 0.97252 0.98303 0.89371 1.60049 1.64060 1.06065 1.00005 1.21707 0.98222 0.98462 0.90094 1.19704 0.85556 0.87658 0.83611 1.90563 1.43703 1.25024 1.85464 1.42206 1.50986 1.23743 1.05995 1.19437 1.32903 1.08538 0.82636 0.86275 1.25036 0.97749 0.98154 0.95136 1.69618 1.45090 1.39012 0.98356 0.86670 0.80316 0.83814 0.78573 1.19563 1.20159 1.19538 1.48948 1.19396 1.24301 1.22417 1.22525 0.99825 0.91310 0.95485 1.21538 0.99211 1.06505 1.03323 1.23920 0.99335 0.93786 0.97233 1.77408 1.02960 1.23745 1.07687 0.92043 0.91490 0.87958 0.87795 0.88099 0.76200 0.91273 0.91044 0.90000 0.91165 0.95192 0.90720 0.83012 0.93692 0.89393 0.79660 0.91584 0.81129 0.83585 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 8.57 37.16 0.32 -0.65 16 2 C 0.18 1.21 3.05 -67.93 -0.21 1.00 16 3 H 0.11 0.96 7.95 -51.93 -0.41 0.54 16 4 C -0.16 -0.85 5.50 -27.88 -0.15 -1.00 16 5 C 0.52 3.95 7.55 -10.98 -0.08 3.87 16 6 O -0.54 -5.85 13.97 5.56 0.08 -5.77 16 7 N -0.73 -4.63 5.56 -60.29 -0.33 -4.97 16 8 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16 9 C -0.13 -1.04 5.59 -26.73 -0.15 -1.19 16 10 C 0.06 0.64 5.69 -3.83 -0.02 0.62 16 11 N -0.67 -9.69 6.13 -115.06 -0.71 -10.39 16 12 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 13 C 0.45 10.05 7.82 -10.98 -0.09 9.96 16 14 O -0.57 -15.01 15.78 5.55 0.09 -14.93 16 15 N -0.59 -13.92 5.09 -10.96 -0.06 -13.97 16 16 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 17 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 18 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 19 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 20 Si 0.88 19.19 27.74 -169.99 -4.71 14.48 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 24 N -0.37 -2.88 3.53 -54.86 -0.19 -3.08 16 25 C 0.05 0.34 10.59 -17.22 -0.18 0.15 16 26 C -0.28 -1.75 10.80 -40.01 -0.43 -2.18 16 27 C 0.04 0.32 12.03 -17.37 -0.21 0.12 16 28 N -0.30 -2.90 12.58 30.62 0.39 -2.51 16 29 H 0.06 0.25 7.15 -51.93 -0.37 -0.13 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.74 5.95 -51.93 -0.31 0.43 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 1.69 8.47 -40.82 -0.35 1.34 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.35 5.21 8.43 -39.29 -0.33 4.88 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.17 0.54 7.26 -52.49 -0.38 0.16 16 47 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 48 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -36.11 402.08 -7.57 -43.67 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -7.44 Total: 11.64 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.51 Total: 4.59 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.13 Total: -59.74 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.17 Total: -20.70 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.11 -7.57 -43.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170579188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.439 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds