Wall clock time and date at job start Tue Mar 31 2020 19:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 O 1.21280 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99815 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99939 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47343 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47233 * 179.97438 * 9 8 7 11 11 N 1.46899 * 109.47035 * 179.97438 * 10 9 8 12 12 C 1.46899 * 111.00154 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47470 * 180.02562 * 12 11 10 14 14 O 1.21294 * 119.99956 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00141 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99623 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00508 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99667 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00172 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 120.00054 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46832 * 90.00372 * 20 18 16 22 22 H 1.48501 * 109.47006 * 210.00148 * 20 18 16 23 23 H 1.48492 * 109.47093 * 330.00359 * 20 18 16 24 24 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 25 25 C 1.34950 * 126.04099 * 34.71284 * 24 2 1 26 26 C 1.35315 * 107.74423 * 179.83807 * 25 24 2 27 27 C 1.39871 * 107.92375 * 0.42973 * 26 25 24 28 28 N 1.30831 * 108.19955 * 359.73088 * 27 26 25 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 33 33 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 34 34 H 0.96998 * 120.00301 * 0.02562 * 7 5 4 35 35 H 1.09003 * 109.47209 * 299.99513 * 8 7 5 36 36 H 1.09000 * 109.47689 * 59.99911 * 8 7 5 37 37 H 1.09000 * 109.46872 * 300.00418 * 9 8 7 38 38 H 1.09001 * 109.46455 * 59.99878 * 9 8 7 39 39 H 1.09002 * 109.47076 * 300.00008 * 10 9 8 40 40 H 1.09000 * 109.47484 * 60.00185 * 10 9 8 41 41 H 1.00903 * 111.00057 * 56.05388 * 11 10 9 42 42 H 1.09005 * 109.47388 * 300.00355 * 12 11 10 43 43 H 1.09006 * 109.46811 * 60.00324 * 12 11 10 44 44 H 0.96998 * 119.99719 * 0.02562 * 15 13 12 45 45 H 0.96996 * 120.00517 * 179.97438 * 19 18 16 46 46 H 1.07998 * 126.12520 * 0.02562 * 25 24 2 47 47 H 1.07999 * 126.03675 * 180.16099 * 26 25 24 48 48 H 1.07996 * 125.89659 * 179.71517 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0118 1.0874 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.5984 0.3654 -4.8932 9 6 2.1094 -0.3553 -6.1424 10 6 1.7046 0.4348 -7.3884 11 7 2.1958 -0.2568 -8.5878 12 6 1.8243 0.4745 -9.8064 13 6 2.3435 -0.2638 -11.0133 14 8 2.9617 -1.2977 -10.8721 15 7 2.1209 0.2249 -12.2495 16 6 2.5937 -0.4466 -13.3473 17 1 3.1448 -1.3667 -13.2216 18 6 2.3646 0.0574 -14.6217 19 7 2.8182 -0.5858 -15.6741 20 14 1.4119 1.6495 -14.8393 21 1 2.3550 2.7966 -14.8250 22 1 0.6880 1.6200 -16.1355 23 1 0.4356 1.7975 -13.7302 24 7 2.0183 -0.6906 1.1962 25 6 1.4372 -1.7526 1.7927 26 6 2.1966 -2.0928 2.8597 27 6 3.2734 -1.2024 2.9231 28 7 3.1676 -0.3615 1.9264 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7995 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 2.4893 -1.2154 -3.7907 35 1 0.5121 0.4436 -4.9373 36 1 2.0330 1.3639 -4.8470 37 1 3.1957 -0.4332 -6.0980 38 1 1.6750 -1.3539 -6.1888 39 1 0.6182 0.5123 -7.4325 40 1 2.1385 1.4337 -7.3422 41 1 1.8592 -1.2075 -8.6203 42 1 0.7387 0.5516 -9.8674 43 1 2.2585 1.4739 -9.7770 44 1 1.6268 1.0519 -12.3623 45 1 2.6581 -0.2342 -16.5637 46 1 0.5304 -2.2447 1.4736 47 1 2.0028 -2.9053 3.5443 48 1 4.0567 -1.2080 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170579188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:32 Heat of formation + Delta-G solvation = -23.841158 kcal Electronic energy + Delta-G solvation = -27002.621465 eV Core-core repulsion = 22900.115173 eV Total energy + Delta-G solvation = -4102.506292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15882 -40.87995 -40.30320 -37.76952 -36.51604 -36.04084 -35.62740 -33.76052 -32.63754 -31.26761 -30.70295 -29.35682 -28.33341 -26.30205 -24.75179 -23.91366 -22.57964 -21.96466 -21.59744 -21.27540 -20.68954 -20.23968 -18.59449 -17.83529 -17.57155 -17.30540 -17.12038 -16.81291 -16.61696 -16.02850 -15.79872 -15.72373 -15.57024 -15.02450 -14.99839 -14.76497 -14.55148 -14.40562 -14.18825 -14.07313 -13.84860 -13.56968 -13.40330 -13.27233 -12.94365 -12.78669 -12.69302 -12.46867 -12.42613 -12.39888 -12.23337 -11.97871 -11.83686 -11.59032 -11.51682 -11.00463 -10.45090 -10.38976 -10.25234 -10.11704 -9.51366 -9.33234 -8.41665 -6.02798 0.99080 1.30333 1.35900 1.44553 1.44906 1.54181 1.95080 1.98746 2.21962 2.23111 2.75981 3.14812 3.41685 3.42699 3.60112 3.78624 4.00169 4.00506 4.09142 4.13691 4.14607 4.18343 4.25277 4.41629 4.44319 4.48151 4.56151 4.58778 4.71089 4.73658 4.77715 4.80956 4.83572 4.97276 5.14575 5.18166 5.19667 5.23837 5.43651 5.52347 5.77796 5.90134 6.04368 6.16260 6.39329 6.47575 6.59410 6.80977 6.87580 7.16545 7.39377 7.95765 8.75965 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039366 B = 0.001252 C = 0.001230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.107872 B =22351.261040 C =22759.583812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.176 3.824 3 H 0.085 0.915 4 C -0.143 4.143 5 C 0.520 3.480 6 O -0.573 6.573 7 N -0.718 5.718 8 C 0.127 3.873 9 C -0.118 4.118 10 C 0.063 3.937 11 N -0.689 5.689 12 C 0.062 3.938 13 C 0.447 3.553 14 O -0.615 6.615 15 N -0.591 5.591 16 C -0.331 4.331 17 H 0.055 0.945 18 C -0.013 4.013 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.258 1.258 22 H -0.275 1.275 23 H -0.230 1.230 24 N -0.375 5.375 25 C 0.055 3.945 26 C -0.286 4.286 27 C 0.036 3.964 28 N -0.346 5.346 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.416 0.584 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.345 0.655 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.203 0.797 47 H 0.167 0.833 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 1.516 36.508 37.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.074 3.926 3 H 0.103 0.897 4 C -0.184 4.184 5 C 0.307 3.693 6 O -0.453 6.453 7 N -0.370 5.370 8 C 0.003 3.997 9 C -0.156 4.156 10 C -0.066 4.066 11 N -0.321 5.321 12 C -0.071 4.071 13 C 0.235 3.765 14 O -0.500 6.500 15 N -0.232 5.232 16 C -0.460 4.460 17 H 0.073 0.927 18 C -0.212 4.212 19 N -0.575 5.575 20 Si 0.784 3.216 21 H -0.182 1.182 22 H -0.200 1.200 23 H -0.154 1.154 24 N -0.157 5.157 25 C -0.090 4.090 26 C -0.315 4.315 27 C -0.149 4.149 28 N -0.167 5.167 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.252 0.748 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.164 0.836 42 H 0.095 0.905 43 H 0.131 0.869 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.219 0.781 47 H 0.185 0.815 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.434 2.897 35.772 36.651 hybrid contribution -1.014 -0.653 -0.566 1.332 sum -8.448 2.244 35.206 36.275 Atomic orbital electron populations 1.22242 0.91120 1.04262 1.04194 1.20869 0.95966 0.95887 0.79924 0.89693 1.21997 1.04387 1.01378 0.90641 1.20542 0.78559 0.85141 0.85103 1.90704 1.41585 1.25931 1.87079 1.45925 1.57443 1.28325 1.05293 1.21210 1.00149 0.95199 0.83162 1.21607 1.02470 0.99662 0.91892 1.21910 0.98177 0.98339 0.88164 1.60051 1.65140 1.06138 1.00785 1.21631 0.99870 0.98255 0.87325 1.21028 0.83578 0.86989 0.84899 1.90540 1.45498 1.27481 1.86435 1.42038 1.51582 1.24324 1.05301 1.19024 1.34159 1.07693 0.85144 0.92650 1.26105 0.98442 1.02855 0.93800 1.69800 1.46725 1.41698 0.99261 0.85372 0.79195 0.77309 0.79688 1.18229 1.20030 1.15369 1.48994 1.19261 1.24882 1.22606 1.23097 1.00442 0.90489 0.95021 1.21884 0.98825 1.06899 1.03853 1.24397 1.00132 0.93436 0.96967 1.77356 1.04647 1.25531 1.09199 0.89688 0.91938 0.89409 0.87751 0.85505 0.74764 0.91386 0.91975 0.90635 0.90415 0.93619 0.90153 0.83589 0.90455 0.86863 0.77435 0.91131 0.78067 0.81540 0.78195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.57 71.98 0.62 -1.04 16 2 C 0.18 2.33 3.05 44.99 0.14 2.47 16 3 H 0.08 1.56 7.95 -2.39 -0.02 1.54 16 4 C -0.14 -1.37 5.50 29.85 0.16 -1.21 16 5 C 0.52 7.34 7.55 87.66 0.66 8.00 16 6 O -0.57 -12.33 13.97 -3.03 -0.04 -12.37 16 7 N -0.72 -7.94 5.56 -463.05 -2.57 -10.52 16 8 C 0.13 1.68 5.67 86.38 0.49 2.17 16 9 C -0.12 -1.63 5.59 30.59 0.17 -1.46 16 10 C 0.06 1.11 5.69 86.30 0.49 1.60 16 11 N -0.69 -18.50 6.13 -517.93 -3.17 -21.67 16 12 C 0.06 1.78 6.17 85.56 0.53 2.31 16 13 C 0.45 19.80 7.82 87.66 0.69 20.48 16 14 O -0.61 -33.63 15.78 -3.07 -0.05 -33.68 16 15 N -0.59 -27.49 5.09 -306.98 -1.56 -29.06 16 16 C -0.33 -19.30 10.16 84.04 0.85 -18.44 16 17 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 18 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 19 N -0.93 -56.08 13.96 21.66 0.30 -55.78 16 20 Si 0.96 38.33 27.74 68.60 1.90 40.23 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 23 H -0.23 -7.63 6.52 99.48 0.65 -6.99 16 24 N -0.37 -5.54 3.53 -327.49 -1.16 -6.70 16 25 C 0.06 0.56 10.59 83.54 0.88 1.45 16 26 C -0.29 -3.10 10.80 21.99 0.24 -2.86 16 27 C 0.04 0.51 12.03 85.24 1.03 1.54 16 28 N -0.35 -6.73 12.58 -57.03 -0.72 -7.45 16 29 H 0.08 0.45 7.15 -2.39 -0.02 0.43 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 1.23 5.95 -2.39 -0.01 1.21 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.42 2.60 8.47 -92.71 -0.79 1.81 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.35 9.82 8.43 -89.69 -0.76 9.07 16 42 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.11 2.78 8.14 -2.38 -0.02 2.76 16 44 H 0.39 14.92 5.76 -92.71 -0.53 14.38 16 45 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.20 0.58 7.26 -2.91 -0.02 0.56 16 47 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 48 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -84.95 402.08 -0.79 -85.74 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -1.14 Total: 36.51 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 7.41 Total: 14.74 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -8.88 Total: -131.17 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.09 Total: -46.05 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.23 kcal Total: -84.95 -0.79 -85.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170579188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.900 kcal (2) G-P(sol) polarization free energy of solvation -84.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds