Wall clock time and date at job start Tue Mar 31 2020 19:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.50698 * 109.46933 * 294.99806 * 4 2 1 6 6 O 1.21278 * 120.00153 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99931 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00168 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47490 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47379 * 180.02562 * 9 8 7 11 11 N 1.46901 * 109.47129 * 180.02562 * 10 9 8 12 12 C 1.46893 * 110.99796 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47105 * 180.02562 * 12 11 10 14 14 O 1.21293 * 119.99896 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00471 * 179.97438 * 13 12 11 16 16 C 1.37093 * 120.00477 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99951 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99918 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00291 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46918 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47460 * 119.99522 * 20 18 16 23 23 H 1.48498 * 109.46878 * 239.99884 * 20 18 16 24 24 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 25 25 C 1.34954 * 126.03720 * 325.00090 * 24 2 1 26 26 C 1.35314 * 107.74683 * 179.97438 * 25 24 2 27 27 C 1.39869 * 107.92006 * 0.02562 * 26 25 24 28 28 N 1.30843 * 108.20314 * 359.74045 * 27 26 25 29 29 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 31 31 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 33 33 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 34 34 H 0.97001 * 120.00182 * 359.97438 * 7 5 4 35 35 H 1.08998 * 109.46998 * 299.99852 * 8 7 5 36 36 H 1.09000 * 109.46958 * 60.00187 * 8 7 5 37 37 H 1.09010 * 109.46924 * 300.00347 * 9 8 7 38 38 H 1.09001 * 109.46969 * 59.99416 * 9 8 7 39 39 H 1.08998 * 109.46849 * 299.99788 * 10 9 8 40 40 H 1.09000 * 109.47227 * 59.99633 * 10 9 8 41 41 H 1.00902 * 111.00106 * 56.03643 * 11 10 9 42 42 H 1.08998 * 109.46920 * 299.99314 * 12 11 10 43 43 H 1.08998 * 109.47449 * 60.00019 * 12 11 10 44 44 H 0.97006 * 119.99701 * 359.97438 * 15 13 12 45 45 H 0.97006 * 119.99769 * 180.02562 * 19 18 16 46 46 H 1.07998 * 126.12536 * 359.95681 * 25 24 2 47 47 H 1.07999 * 126.03749 * 179.97438 * 26 25 24 48 48 H 1.07994 * 125.89991 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 8 1.0118 1.0875 2.3632 7 7 1.9854 -0.3913 3.7001 8 6 1.5984 0.3656 4.8932 9 6 2.1082 -0.3556 6.1425 10 6 1.7035 0.4346 7.3886 11 7 2.1936 -0.2577 8.5880 12 6 1.8221 0.4737 9.8065 13 6 2.3412 -0.2646 11.0134 14 8 2.9595 -1.2985 10.8723 15 7 2.1186 0.2240 12.2496 16 6 2.5905 -0.4478 13.3475 17 1 3.1402 -1.3689 13.2219 18 6 2.3604 0.0557 14.6220 19 7 1.6911 1.1762 14.7749 20 14 3.0040 -0.8594 16.1180 21 1 3.7201 -2.0841 15.6789 22 1 3.9370 0.0169 16.8709 23 1 1.8661 -1.2389 16.9934 24 7 2.0184 -0.6907 -1.1962 25 6 1.4402 -1.7560 -1.7895 26 6 2.1961 -2.0924 -2.8602 27 6 3.2734 -1.2026 -2.9231 28 7 3.1650 -0.3587 -1.9291 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 1.2952 33 1 3.1264 -0.7995 1.2056 34 1 2.4893 -1.2152 3.7907 35 1 2.0331 1.3641 4.8468 36 1 0.5121 0.4439 4.9372 37 1 1.6732 -1.3541 6.1886 38 1 3.1945 -0.4344 6.0986 39 1 2.1382 1.4330 7.3426 40 1 0.6172 0.5129 7.4321 41 1 3.1914 -0.3999 8.5411 42 1 2.2570 1.4727 9.7774 43 1 0.7366 0.5515 9.8670 44 1 1.6245 1.0512 12.3625 45 1 1.5309 1.5279 15.6646 46 1 0.5363 -2.2515 -1.4672 47 1 2.0022 -2.9050 -3.5447 48 1 4.0566 -1.2081 -3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170579189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:36 Heat of formation + Delta-G solvation = -1.554755 kcal Electronic energy + Delta-G solvation = -26946.781196 eV Core-core repulsion = 22845.241315 eV Total energy + Delta-G solvation = -4101.539881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64208 -40.24281 -38.35512 -36.83923 -35.78923 -34.93074 -33.87525 -31.80660 -31.20732 -30.67882 -30.17801 -28.63730 -26.97509 -24.93102 -23.89902 -23.04807 -21.81461 -21.45346 -20.95896 -20.15703 -19.24672 -18.06383 -17.89101 -17.01345 -16.67577 -16.34409 -16.11863 -15.72590 -15.24514 -15.18884 -14.81083 -14.57021 -14.38391 -14.13186 -14.09656 -13.66582 -13.53477 -13.43041 -13.31584 -13.13670 -12.96669 -12.38586 -12.08308 -12.02632 -11.89511 -11.84472 -11.73480 -11.49748 -11.47313 -11.13038 -11.05767 -10.99686 -10.35952 -10.32643 -10.24262 -9.82725 -9.54151 -9.48222 -9.01313 -8.50437 -8.11273 -7.98283 -6.43792 -3.84708 1.49084 1.96336 2.15249 2.47869 2.80874 3.14873 3.25612 3.32764 3.88281 3.92955 4.04906 4.10260 4.26433 4.29080 4.42250 4.54609 4.62673 4.73666 4.85891 4.89924 4.90812 4.98084 5.13218 5.19251 5.23513 5.26276 5.28683 5.35911 5.42835 5.45369 5.55352 5.62455 5.67054 5.75502 5.89508 5.93932 5.96490 6.05262 6.24008 6.26189 6.61741 7.01407 7.14844 7.33263 7.53460 7.59870 7.73815 8.04355 8.58961 9.15848 9.52106 10.03307 10.73977 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041630 B = 0.001210 C = 0.001190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.434412 B =23139.920371 C =23514.114530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.176 3.824 3 H 0.112 0.888 4 C -0.155 4.155 5 C 0.520 3.480 6 O -0.537 6.537 7 N -0.726 5.726 8 C 0.120 3.880 9 C -0.130 4.130 10 C 0.063 3.937 11 N -0.670 5.670 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.584 6.584 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.104 0.896 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 N -0.368 5.368 25 C 0.055 3.945 26 C -0.276 4.276 27 C 0.043 3.957 28 N -0.298 5.298 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.172 0.828 47 H 0.146 0.854 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -2.805 -32.465 32.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.130 0.870 4 C -0.196 4.196 5 C 0.305 3.695 6 O -0.414 6.414 7 N -0.377 5.377 8 C -0.004 4.004 9 C -0.168 4.168 10 C -0.068 4.068 11 N -0.302 5.302 12 C -0.082 4.082 13 C 0.225 3.775 14 O -0.469 6.469 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 N -0.150 5.150 25 C -0.091 4.091 26 C -0.306 4.306 27 C -0.143 4.143 28 N -0.118 5.118 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.189 0.811 47 H 0.164 0.836 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.419 -1.990 -31.692 31.847 hybrid contribution 0.471 -0.322 0.507 0.763 sum -1.948 -2.312 -31.185 31.331 Atomic orbital electron populations 1.22334 0.92052 1.03084 1.05199 1.20922 0.95338 0.96954 0.79391 0.87047 1.22085 1.04286 1.00817 0.92452 1.20221 0.79275 0.85578 0.84406 1.90713 1.39821 1.24333 1.86574 1.46005 1.57811 1.28045 1.05878 1.21371 1.00633 0.95372 0.83020 1.21751 1.01760 1.00640 0.92641 1.21823 1.00883 0.94783 0.89282 1.60041 1.20941 1.49313 0.99925 1.21670 1.01422 0.95021 0.90086 1.19808 0.85841 0.87692 0.84123 1.90519 1.45191 1.25331 1.85811 1.41869 1.49546 1.24112 1.04448 1.19761 1.32336 1.07281 0.83571 0.87854 1.25263 0.97114 0.96389 0.99134 1.69620 1.40475 1.20045 1.24126 0.85803 0.78462 0.79399 0.80694 1.19199 1.20756 1.20723 1.48951 1.19637 1.24044 1.22407 1.22529 0.99867 0.91291 0.95434 1.21535 0.99251 1.06586 1.03220 1.23918 0.99301 0.93792 0.97287 1.77407 1.03035 1.23668 1.07726 0.87924 0.91499 0.92029 0.88076 0.87852 0.76232 0.91260 0.91022 0.90083 0.91218 0.95230 0.90751 0.83170 0.93804 0.89529 0.77441 0.91901 0.81113 0.83590 0.80097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 8.58 37.16 0.32 -0.69 16 2 C 0.18 1.24 3.05 -67.93 -0.21 1.04 16 3 H 0.11 0.98 7.95 -51.93 -0.41 0.56 16 4 C -0.16 -0.88 5.50 -27.89 -0.15 -1.04 16 5 C 0.52 4.10 7.55 -10.99 -0.08 4.02 16 6 O -0.54 -6.02 13.97 5.56 0.08 -5.94 16 7 N -0.73 -4.88 5.56 -60.29 -0.33 -5.21 16 8 C 0.12 0.96 5.67 -4.04 -0.02 0.93 16 9 C -0.13 -1.10 5.59 -26.73 -0.15 -1.25 16 10 C 0.06 0.69 5.69 -3.82 -0.02 0.67 16 11 N -0.67 -10.27 6.13 -115.06 -0.70 -10.98 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 13 C 0.44 10.30 7.82 -10.99 -0.09 10.21 16 14 O -0.58 -15.74 15.78 5.55 0.09 -15.66 16 15 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 16 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 20 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 N -0.37 -2.94 3.53 -54.86 -0.19 -3.13 16 25 C 0.05 0.35 10.59 -17.22 -0.18 0.16 16 26 C -0.28 -1.79 10.80 -40.01 -0.43 -2.22 16 27 C 0.04 0.33 12.03 -17.36 -0.21 0.12 16 28 N -0.30 -2.94 12.58 30.62 0.39 -2.55 16 29 H 0.10 0.77 5.95 -51.93 -0.31 0.46 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.26 7.16 -51.93 -0.37 -0.11 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.40 1.81 8.47 -40.82 -0.35 1.46 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.35 5.49 8.43 -39.29 -0.33 5.16 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.17 0.57 7.26 -52.49 -0.38 0.19 16 47 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 48 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 405.22 15.07 6.11 6.11 Total: -1.00 -34.84 405.22 -7.91 -42.76 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -7.48 Total: 11.84 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.50 Total: 4.82 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.18 Total: -59.82 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.17 Total: -21.60 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.84 -7.91 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170579189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.204 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds