Wall clock time and date at job start Tue Mar 31 2020 20:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47387 * 269.97799 * 6 5 4 8 8 O 1.21277 * 119.99809 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00062 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00038 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47085 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46705 * 180.02562 * 12 11 10 14 14 C 1.46904 * 110.99400 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46683 * 179.97438 * 14 13 12 16 16 O 1.21296 * 120.00401 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99603 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99596 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99995 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99805 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00120 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00213 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46986 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47480 * 120.00138 * 22 20 18 25 25 H 1.48497 * 109.47288 * 240.00522 * 22 20 18 26 26 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 27 27 N 1.30844 * 108.19764 * 359.97438 * 26 5 4 28 28 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 30 30 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 31 31 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 32 32 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 33 33 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 34 34 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 35 35 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 36 36 H 0.97001 * 119.99803 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47398 * 299.99975 * 10 9 7 38 38 H 1.09000 * 109.47035 * 60.00318 * 10 9 7 39 39 H 1.09002 * 109.47087 * 300.00375 * 11 10 9 40 40 H 1.09000 * 109.46688 * 60.00314 * 11 10 9 41 41 H 1.08997 * 109.46848 * 299.99877 * 12 11 10 42 42 H 1.09000 * 109.47281 * 60.00457 * 12 11 10 43 43 H 1.00895 * 110.99981 * 56.04853 * 13 12 11 44 44 H 1.09005 * 109.46883 * 299.99175 * 14 13 12 45 45 H 1.08994 * 109.47580 * 59.99823 * 14 13 12 46 46 H 0.96995 * 120.00130 * 359.97438 * 17 15 14 47 47 H 0.96998 * 120.00074 * 179.97438 * 21 20 18 48 48 H 1.07995 * 125.89923 * 180.25722 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 6 3.1527 4.9174 2.3197 8 8 1.9786 4.6545 2.4714 9 7 3.7394 5.8522 3.0933 10 6 2.9588 6.5504 4.1176 11 6 3.8560 7.5515 4.8483 12 6 3.0409 8.2803 5.9186 13 7 3.9022 9.2418 6.6197 14 6 3.1517 9.9614 7.6575 15 6 4.0661 10.9361 8.3539 16 8 5.2288 11.0224 8.0190 17 7 3.5921 11.7119 9.3489 18 6 4.4241 12.5982 9.9828 19 1 5.4593 12.6750 9.6845 20 6 3.9353 13.3984 11.0081 21 7 2.6756 13.3052 11.3707 22 14 5.0687 14.6065 11.8714 23 1 6.4282 14.5189 11.2802 24 1 4.5438 15.9852 11.7022 25 1 5.1351 14.2762 13.3176 26 6 2.3129 3.4723 -0.6000 27 7 1.6811 2.3745 -0.9282 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3184 1.4127 1.7364 34 1 4.7828 3.6692 1.7373 35 1 4.3482 4.9239 0.5519 36 1 4.6782 6.0633 2.9712 37 1 2.1315 7.0805 3.6456 38 1 2.5663 5.8264 4.8316 39 1 4.6830 7.0211 5.3204 40 1 4.2488 8.2756 4.1346 41 1 2.2137 8.8106 5.4469 42 1 2.6483 7.5559 6.6323 43 1 4.3294 9.8851 5.9703 44 1 2.3248 10.5032 7.1982 45 1 2.7606 9.2486 8.3834 46 1 2.6623 11.6431 9.6165 47 1 2.3344 13.8635 12.0868 48 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170810774.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:22 Heat of formation + Delta-G solvation = -4.936344 kcal Electronic energy + Delta-G solvation = -26737.934689 eV Core-core repulsion = 22636.248172 eV Total energy + Delta-G solvation = -4101.686517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58140 -39.69546 -38.31381 -36.54549 -35.04979 -34.76576 -33.83774 -32.49626 -31.36979 -31.04414 -30.49720 -27.79316 -26.63716 -24.74713 -24.14558 -23.14880 -21.69934 -21.22568 -21.00118 -20.07718 -19.21142 -17.88669 -17.42203 -17.17533 -16.43080 -16.17822 -15.80605 -15.75497 -15.47058 -14.78880 -14.67793 -14.50148 -14.37901 -14.25680 -13.82200 -13.61991 -13.49094 -13.45726 -13.26086 -12.89000 -12.68896 -12.55461 -12.18692 -11.98144 -11.88625 -11.80444 -11.75251 -11.46351 -11.41740 -11.09211 -10.93325 -10.84233 -10.34239 -10.22511 -10.07552 -9.71310 -9.51978 -9.26982 -8.69780 -8.47002 -8.07110 -7.95833 -6.41661 -3.82546 1.58345 2.16154 2.41025 2.48429 3.11188 3.16489 3.27091 3.34326 3.90950 4.02598 4.09675 4.31689 4.42168 4.48800 4.57075 4.66036 4.69500 4.78996 4.83973 4.91982 5.03690 5.07186 5.12893 5.18848 5.23083 5.26275 5.29679 5.44761 5.47793 5.53350 5.64769 5.66097 5.75054 5.80044 5.97737 6.00341 6.05238 6.23500 6.27169 6.33424 6.68301 7.19668 7.29438 7.39884 7.55479 7.64935 8.06181 8.06687 8.61347 9.18009 9.54518 10.05812 10.76162 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042450 B = 0.001196 C = 0.001179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.440956 B =23399.693075 C =23747.098760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.131 3.869 3 N -0.372 5.372 4 C 0.069 3.931 5 C -0.222 4.222 6 C -0.059 4.059 7 C 0.509 3.491 8 O -0.533 6.533 9 N -0.733 5.733 10 C 0.121 3.879 11 C -0.129 4.129 12 C 0.062 3.938 13 N -0.670 5.670 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.062 3.938 27 N -0.296 5.296 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.170 0.830 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.401 0.599 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.349 0.651 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -25.039 -22.657 33.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 N -0.155 5.155 4 C -0.078 4.078 5 C -0.234 4.234 6 C -0.100 4.100 7 C 0.295 3.705 8 O -0.409 6.409 9 N -0.386 5.386 10 C -0.003 4.003 11 C -0.167 4.167 12 C -0.068 4.068 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.124 4.124 27 N -0.117 5.117 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.188 0.812 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.235 0.765 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.168 0.832 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.226 0.774 47 H 0.081 0.919 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.319 -26.250 -23.002 34.979 hybrid contribution 0.298 1.719 0.834 1.934 sum -2.020 -24.531 -22.168 33.125 Atomic orbital electron populations 1.22057 0.93703 1.02829 1.03805 1.21677 0.96242 0.77431 1.03622 1.48606 1.35425 1.10191 1.21245 1.22257 0.95201 0.94749 0.95580 1.19381 1.08627 0.94317 1.01086 1.19886 0.96897 0.97068 0.96193 1.20798 0.88194 0.79473 0.82062 1.90720 1.16505 1.64378 1.69298 1.46055 1.14443 1.40813 1.37259 1.21293 0.94350 0.94698 0.89966 1.21741 0.99115 0.98079 0.97742 1.21833 0.94056 0.95600 0.95321 1.60050 1.32383 1.21244 1.16521 1.21673 0.94948 0.96368 0.95234 1.19820 0.88924 0.84646 0.84011 1.90519 1.18039 1.70961 1.67303 1.41874 1.12850 1.34458 1.30861 1.19763 0.95137 1.14219 1.13777 0.87857 1.25262 0.96463 0.98747 0.97459 1.69622 1.13633 1.40804 1.30248 0.85801 0.80118 0.79563 0.78872 1.19197 1.20780 1.20739 1.23710 0.95174 0.97333 0.96208 1.77300 1.23371 0.97039 1.14003 0.90711 0.91912 0.91085 0.89847 0.88706 0.81238 0.88389 0.88079 0.76472 0.91605 0.91435 0.90157 0.91264 0.95279 0.90824 0.83195 0.93815 0.89556 0.77443 0.91922 0.80316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.10 37.16 0.38 -0.52 16 2 C 0.13 0.67 7.23 -4.04 -0.03 0.64 16 3 N -0.37 -3.20 3.68 -61.37 -0.23 -3.43 16 4 C 0.07 0.54 11.36 -17.22 -0.20 0.34 16 5 C -0.22 -1.87 4.59 -105.05 -0.48 -2.36 16 6 C -0.06 -0.35 6.18 -29.03 -0.18 -0.53 16 7 C 0.51 4.72 7.82 -10.98 -0.09 4.64 16 8 O -0.53 -7.48 16.03 5.56 0.09 -7.39 16 9 N -0.73 -5.54 5.56 -60.30 -0.33 -5.87 16 10 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 11 C -0.13 -1.17 5.59 -26.73 -0.15 -1.32 16 12 C 0.06 0.72 5.69 -3.82 -0.02 0.70 16 13 N -0.67 -10.52 6.12 -115.05 -0.70 -11.23 16 14 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 15 C 0.44 10.41 7.82 -10.98 -0.09 10.33 16 16 O -0.58 -15.84 15.78 5.54 0.09 -15.76 16 17 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 19 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 22 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.06 0.59 11.96 -17.36 -0.21 0.38 16 27 N -0.30 -3.19 12.42 30.62 0.38 -2.81 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.25 8.07 -51.93 -0.42 -0.17 16 33 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.40 1.93 8.47 -40.82 -0.35 1.58 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 412.61 15.07 6.22 6.22 Total: -1.00 -37.07 412.61 -7.90 -44.97 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -7.69 Total: 11.31 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -1.36 Total: 6.21 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.22 Total: -61.55 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.18 Total: -23.14 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -37.07 -7.90 -44.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170810774.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.031 kcal (2) G-P(sol) polarization free energy of solvation -37.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds