Wall clock time and date at job start Tue Mar 31 2020 20:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47387 * 269.97799 * 6 5 4 8 8 O 1.21277 * 119.99809 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00062 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00038 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47085 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46705 * 180.02562 * 12 11 10 14 14 C 1.46904 * 110.99400 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46683 * 179.97438 * 14 13 12 16 16 O 1.21296 * 120.00401 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99603 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99596 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99995 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99805 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00120 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00213 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46986 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47480 * 120.00138 * 22 20 18 25 25 H 1.48497 * 109.47288 * 240.00522 * 22 20 18 26 26 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 27 27 N 1.30844 * 108.19764 * 359.97438 * 26 5 4 28 28 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 30 30 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 31 31 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 32 32 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 33 33 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 34 34 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 35 35 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 36 36 H 0.97001 * 119.99803 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47398 * 299.99975 * 10 9 7 38 38 H 1.09000 * 109.47035 * 60.00318 * 10 9 7 39 39 H 1.09002 * 109.47087 * 300.00375 * 11 10 9 40 40 H 1.09000 * 109.46688 * 60.00314 * 11 10 9 41 41 H 1.08997 * 109.46848 * 299.99877 * 12 11 10 42 42 H 1.09000 * 109.47281 * 60.00457 * 12 11 10 43 43 H 1.00895 * 110.99981 * 56.04853 * 13 12 11 44 44 H 1.09005 * 109.46883 * 299.99175 * 14 13 12 45 45 H 1.08994 * 109.47580 * 59.99823 * 14 13 12 46 46 H 0.96995 * 120.00130 * 359.97438 * 17 15 14 47 47 H 0.96998 * 120.00074 * 179.97438 * 21 20 18 48 48 H 1.07995 * 125.89923 * 180.25722 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 6 3.1527 4.9174 2.3197 8 8 1.9786 4.6545 2.4714 9 7 3.7394 5.8522 3.0933 10 6 2.9588 6.5504 4.1176 11 6 3.8560 7.5515 4.8483 12 6 3.0409 8.2803 5.9186 13 7 3.9022 9.2418 6.6197 14 6 3.1517 9.9614 7.6575 15 6 4.0661 10.9361 8.3539 16 8 5.2288 11.0224 8.0190 17 7 3.5921 11.7119 9.3489 18 6 4.4241 12.5982 9.9828 19 1 5.4593 12.6750 9.6845 20 6 3.9353 13.3984 11.0081 21 7 2.6756 13.3052 11.3707 22 14 5.0687 14.6065 11.8714 23 1 6.4282 14.5189 11.2802 24 1 4.5438 15.9852 11.7022 25 1 5.1351 14.2762 13.3176 26 6 2.3129 3.4723 -0.6000 27 7 1.6811 2.3745 -0.9282 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3184 1.4127 1.7364 34 1 4.7828 3.6692 1.7373 35 1 4.3482 4.9239 0.5519 36 1 4.6782 6.0633 2.9712 37 1 2.1315 7.0805 3.6456 38 1 2.5663 5.8264 4.8316 39 1 4.6830 7.0211 5.3204 40 1 4.2488 8.2756 4.1346 41 1 2.2137 8.8106 5.4469 42 1 2.6483 7.5559 6.6323 43 1 4.3294 9.8851 5.9703 44 1 2.3248 10.5032 7.1982 45 1 2.7606 9.2486 8.3834 46 1 2.6623 11.6431 9.6165 47 1 2.3344 13.8635 12.0868 48 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170810774.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:21 Heat of formation + Delta-G solvation = -34.219795 kcal Electronic energy + Delta-G solvation = -26739.204515 eV Core-core repulsion = 22636.248172 eV Total energy + Delta-G solvation = -4102.956343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16115 -40.43786 -40.13560 -37.60915 -36.08212 -35.60597 -35.43857 -33.31053 -33.11113 -32.06830 -31.04763 -28.82706 -27.70434 -26.26993 -24.74105 -24.28881 -22.54040 -21.87031 -21.59295 -21.07888 -20.66073 -19.89368 -18.00049 -17.92909 -17.70745 -17.22749 -16.80597 -16.59492 -16.37059 -16.29243 -15.92869 -15.59962 -15.28987 -15.14366 -15.03975 -14.76448 -14.38709 -14.30883 -14.08446 -13.88485 -13.55401 -13.35712 -13.21996 -13.12428 -12.99477 -12.85150 -12.65870 -12.55914 -12.39147 -12.38518 -12.28426 -12.10039 -11.80570 -11.50665 -11.42856 -10.86759 -10.34619 -10.33133 -10.01088 -9.99531 -9.32478 -9.27891 -8.46295 -5.95196 1.00349 1.37526 1.42970 1.57216 1.67854 1.78694 1.80325 2.05439 2.29346 2.46375 2.98688 3.21207 3.54512 3.59325 3.99087 4.01751 4.04803 4.08205 4.15027 4.19625 4.22163 4.33329 4.34847 4.42527 4.49088 4.51701 4.59555 4.61057 4.72856 4.74552 4.77624 4.82616 4.88407 4.98045 5.19271 5.20600 5.22489 5.26339 5.41771 5.55513 5.75053 5.89418 6.10639 6.19726 6.42843 6.60394 6.71078 6.78521 7.13016 7.42113 7.56612 8.11567 8.71352 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042450 B = 0.001196 C = 0.001179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.440956 B =23399.693075 C =23747.098760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.122 3.878 3 N -0.378 5.378 4 C 0.063 3.937 5 C -0.238 4.238 6 C -0.050 4.050 7 C 0.508 3.492 8 O -0.587 6.587 9 N -0.721 5.721 10 C 0.128 3.872 11 C -0.114 4.114 12 C 0.062 3.938 13 N -0.682 5.682 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.080 0.920 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.045 3.955 27 N -0.337 5.337 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.199 0.801 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.417 0.583 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.346 0.654 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -25.832 -22.566 34.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.003 3.997 3 N -0.161 5.161 4 C -0.084 4.084 5 C -0.250 4.250 6 C -0.091 4.091 7 C 0.296 3.704 8 O -0.467 6.467 9 N -0.374 5.374 10 C 0.003 3.997 11 C -0.152 4.152 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.069 4.069 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.098 0.902 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.140 4.140 27 N -0.159 5.159 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.216 0.784 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.164 0.836 44 H 0.084 0.916 45 H 0.121 0.879 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.487 -27.051 -22.924 35.489 hybrid contribution 0.019 1.904 0.780 2.057 sum -1.468 -25.147 -22.144 33.539 Atomic orbital electron populations 1.22011 0.94257 1.03835 1.01769 1.22002 0.95831 0.76315 1.05587 1.48924 1.35401 1.10855 1.20894 1.22839 0.94654 0.94999 0.95869 1.19732 1.09088 0.95165 1.00980 1.19946 0.96522 0.97053 0.95530 1.21400 0.87700 0.79145 0.82201 1.90703 1.18931 1.66110 1.70918 1.45951 1.15121 1.40015 1.36341 1.21104 0.94217 0.94362 0.90004 1.21580 0.98572 0.97927 0.97128 1.21920 0.94130 0.94885 0.95819 1.60055 1.33355 1.21329 1.16749 1.21537 0.93960 0.95515 0.95844 1.20893 0.89218 0.84400 0.83030 1.90485 1.20169 1.72071 1.68198 1.41947 1.12786 1.34784 1.31541 1.19726 0.94804 1.16331 1.15532 0.90240 1.26040 0.97942 0.99793 0.97430 1.69681 1.14672 1.41327 1.30525 0.84867 0.77930 0.77614 0.77910 1.19669 1.19621 1.19648 1.24079 0.95305 0.97617 0.97030 1.77216 1.24767 0.98159 1.15727 0.88171 0.93656 0.93279 0.88807 0.85778 0.78370 0.85384 0.85721 0.74585 0.92633 0.92445 0.90104 0.90360 0.94323 0.90465 0.83571 0.91617 0.87887 0.76986 0.91312 0.79238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.10 71.98 0.73 -0.98 16 2 C 0.12 1.11 7.23 86.38 0.62 1.73 16 3 N -0.38 -6.31 3.68 -348.07 -1.28 -7.59 16 4 C 0.06 0.91 11.36 83.54 0.95 1.86 16 5 C -0.24 -3.75 4.59 -20.14 -0.09 -3.84 16 6 C -0.05 -0.48 6.18 29.10 0.18 -0.30 16 7 C 0.51 8.67 7.82 87.66 0.69 9.36 16 8 O -0.59 -16.35 16.03 -3.02 -0.05 -16.40 16 9 N -0.72 -9.45 5.56 -463.07 -2.57 -12.02 16 10 C 0.13 2.13 5.67 86.38 0.49 2.62 16 11 C -0.11 -1.85 5.59 30.60 0.17 -1.68 16 12 C 0.06 1.31 5.69 86.30 0.49 1.80 16 13 N -0.68 -20.44 6.12 -517.92 -3.17 -23.61 16 14 C 0.06 2.16 6.17 85.56 0.53 2.68 16 15 C 0.44 20.70 7.82 87.66 0.69 21.39 16 16 O -0.62 -34.27 15.78 -3.08 -0.05 -34.32 16 17 N -0.57 -29.41 5.29 -306.97 -1.62 -31.04 16 18 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 21 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 22 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 C 0.05 0.86 11.96 85.23 1.02 1.88 16 27 N -0.34 -7.43 12.42 -57.02 -0.71 -8.14 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.12 0.36 8.07 -2.39 -0.02 0.35 16 33 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.42 2.83 8.47 -92.71 -0.79 2.04 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.35 10.70 8.43 -89.70 -0.76 9.95 16 44 H 0.07 1.95 8.14 -2.38 -0.02 1.94 16 45 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 46 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 47 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 48 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -82.42 412.61 -0.69 -83.10 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -1.28 Total: 36.48 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 7.74 Total: 18.16 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -9.07 Total: -131.82 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.10 Total: -50.71 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -82.42 -0.69 -83.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170810774.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.885 kcal (2) G-P(sol) polarization free energy of solvation -82.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds