Wall clock time and date at job start Tue Mar 31 2020 20:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00208 * 2 1 4 4 H 1.08995 * 109.47257 * 330.00144 * 3 2 1 5 5 C 1.52999 * 109.47156 * 90.00160 * 3 2 1 6 6 C 1.50706 * 109.46966 * 209.99766 * 3 2 1 7 7 O 1.21280 * 119.99697 * 351.89716 * 6 3 2 8 8 N 1.34771 * 119.99832 * 171.88964 * 6 3 2 9 9 C 1.46925 * 120.62987 * 175.10988 * 8 6 3 10 10 C 1.53187 * 108.77583 * 126.41771 * 9 8 6 11 11 C 1.53044 * 109.31424 * 54.63725 * 10 9 8 12 12 C 1.53045 * 109.53383 * 298.63656 * 11 10 9 13 13 H 1.09002 * 109.49461 * 301.40973 * 12 11 10 14 14 N 1.46500 * 109.52076 * 181.33265 * 12 11 10 15 15 C 1.35305 * 125.86762 * 324.79529 * 14 12 11 16 16 C 1.35358 * 106.17684 * 179.90594 * 15 14 12 17 17 C 1.50704 * 126.75378 * 180.12318 * 16 15 14 18 18 N 1.46503 * 109.46881 * 95.24647 * 17 16 15 19 19 C 1.36934 * 119.99601 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00615 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99502 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00480 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99782 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47224 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47361 * 120.00064 * 23 21 19 26 26 H 1.48507 * 109.46992 * 239.99750 * 23 21 19 27 27 N 1.33768 * 106.49404 * 0.35307 * 16 15 14 28 28 N 1.28634 * 108.88534 * 359.77176 * 27 16 15 29 29 C 1.46929 * 120.63158 * 355.14081 * 8 6 3 30 30 H 1.08994 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47219 * 300.00687 * 1 2 3 32 32 H 1.09007 * 109.46991 * 59.99539 * 1 2 3 33 33 H 1.09001 * 109.47028 * 306.51884 * 5 3 2 34 34 H 1.09000 * 109.47062 * 66.51951 * 5 3 2 35 35 H 1.08999 * 109.47434 * 186.52342 * 5 3 2 36 36 H 1.09003 * 109.59087 * 246.20499 * 9 8 6 37 37 H 1.09003 * 109.58797 * 6.63127 * 9 8 6 38 38 H 1.09006 * 109.50284 * 174.59144 * 10 9 8 39 39 H 1.09006 * 109.49702 * 294.65476 * 10 9 8 40 40 H 1.08995 * 109.46166 * 178.61924 * 11 10 9 41 41 H 1.08993 * 109.46092 * 58.65321 * 11 10 9 42 42 H 1.08004 * 126.91938 * 0.02562 * 15 14 12 43 43 H 1.09000 * 109.47060 * 215.24443 * 17 16 15 44 44 H 1.08992 * 109.47075 * 335.25029 * 17 16 15 45 45 H 0.97007 * 119.99766 * 359.97438 * 18 17 16 46 46 H 0.97001 * 120.00386 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.58719 * 113.79619 * 29 8 6 48 48 H 1.09002 * 109.58577 * 353.36481 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.8163 0.1992 -1.0413 8 7 3.9959 2.4095 -0.9781 9 6 5.3391 2.3806 -1.5730 10 6 5.3395 3.2532 -2.8321 11 6 4.8397 4.6553 -2.4764 12 6 3.4056 4.5689 -1.9490 13 1 2.7663 4.1150 -2.7062 14 7 2.9162 5.9144 -1.6386 15 6 3.6563 6.9319 -1.1410 16 6 2.8131 7.9826 -1.0100 17 6 3.1578 9.3570 -0.4967 18 7 3.4521 10.2409 -1.6273 19 6 3.7926 11.5482 -1.4037 20 1 3.8446 11.9277 -0.3939 21 6 4.0709 12.3859 -2.4751 22 7 4.0081 11.9235 -3.7057 23 14 4.5362 14.1691 -2.1701 24 1 4.5360 14.4379 -0.7097 25 1 5.8904 14.4288 -2.7215 26 1 3.5514 15.0586 -2.8368 27 7 1.6125 7.5596 -1.4210 28 7 1.7071 6.3301 -1.7870 29 6 3.3832 3.7112 -0.6799 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.2780 1.6912 1.9889 34 1 2.9711 1.1459 1.9215 35 1 2.5519 2.8088 1.4448 36 1 6.0639 2.7703 -0.8582 37 1 5.5992 1.3559 -1.8385 38 1 6.3524 3.3180 -3.2296 39 1 4.6823 2.8114 -3.5811 40 1 4.8622 5.2853 -3.3655 41 1 5.4831 5.0865 -1.7096 42 1 4.7087 6.9108 -0.8989 43 1 2.3146 9.7564 0.0669 44 1 4.0313 9.2940 0.1521 45 1 3.4057 9.9000 -2.5343 46 1 4.2022 12.5089 -4.4544 47 1 3.9485 4.2093 0.1078 48 1 2.3528 3.5645 -0.3562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185883401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:51 Heat of formation + Delta-G solvation = 43.113936 kcal Electronic energy + Delta-G solvation = -29577.926103 eV Core-core repulsion = 25478.323203 eV Total energy + Delta-G solvation = -4099.602901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.12893 -40.95586 -38.69790 -37.61877 -35.18448 -34.39237 -33.59528 -31.97482 -31.51289 -30.25206 -29.91831 -27.30271 -26.49648 -25.90090 -24.68665 -24.07801 -22.88814 -22.11026 -20.86025 -20.73269 -19.65724 -18.15061 -17.51417 -17.35688 -16.97610 -16.39802 -16.04200 -15.79864 -15.42486 -15.10381 -14.96121 -14.76179 -14.53899 -14.31906 -13.80322 -13.73866 -13.57179 -13.45874 -13.16117 -13.02896 -12.85620 -12.70372 -12.40832 -12.31092 -11.90079 -11.77956 -11.66803 -11.57193 -11.40491 -11.25232 -10.92283 -10.84596 -10.49727 -10.47390 -10.12320 -10.03846 -9.89737 -9.76887 -9.26269 -8.92585 -8.88352 -6.94288 -5.76367 -3.06098 1.69590 1.93891 2.09465 2.45164 2.84495 3.33256 3.43728 3.49398 3.51738 3.79634 3.89282 4.00198 4.28463 4.29848 4.39527 4.45135 4.49265 4.59985 4.65204 4.71629 4.84261 4.85521 4.93033 4.99712 5.02011 5.11870 5.17146 5.22665 5.25936 5.28291 5.32914 5.44187 5.51734 5.57914 5.59870 5.65030 5.79494 5.83845 6.14335 6.34948 6.49038 6.60686 6.67748 6.73461 6.76971 7.63686 7.69474 8.40737 8.76663 9.52755 10.08154 10.43891 11.46396 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.002238 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.785332 B =12506.753493 C =13234.655797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.067 3.933 4 H 0.088 0.912 5 C -0.174 4.174 6 C 0.523 3.477 7 O -0.512 6.512 8 N -0.609 5.609 9 C 0.107 3.893 10 C -0.129 4.129 11 C -0.133 4.133 12 C 0.136 3.864 13 H 0.116 0.884 14 N -0.297 5.297 15 C -0.041 4.041 16 C -0.003 4.003 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.239 4.239 20 H 0.074 0.926 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.291 1.291 27 N -0.251 5.251 28 N -0.097 5.097 29 C 0.097 3.903 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.187 0.813 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.087 0.913 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -24.941 7.910 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.278 6.278 3 C 0.006 3.994 4 H 0.106 0.894 5 C -0.231 4.231 6 C 0.310 3.690 7 O -0.385 6.385 8 N -0.345 5.345 9 C -0.015 4.015 10 C -0.167 4.167 11 C -0.171 4.171 12 C 0.032 3.968 13 H 0.134 0.866 14 N -0.091 5.091 15 C -0.192 4.192 16 C -0.141 4.141 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.370 4.370 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 N -0.118 5.118 28 N -0.075 5.075 29 C -0.028 4.028 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.204 0.796 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.945 -25.955 7.376 26.999 hybrid contribution 1.092 1.468 -0.021 1.830 sum 0.147 -24.487 7.355 25.568 Atomic orbital electron populations 1.22930 0.80195 1.03456 1.00377 1.88036 1.19990 1.24801 1.94966 1.21960 0.93342 0.87170 0.96957 0.89444 1.22301 1.04032 1.02108 0.94695 1.20402 0.86311 0.83439 0.78841 1.90728 1.67782 1.28961 1.51073 1.47936 1.18086 1.04895 1.63600 1.21762 0.82460 1.02621 0.94644 1.21900 1.03228 0.93752 0.97868 1.21973 0.93013 0.98898 1.03256 1.21874 0.97940 0.78372 0.98616 0.86641 1.47244 1.07887 1.10954 1.43022 1.23329 1.00489 0.88458 1.06895 1.22487 0.89426 0.98333 1.03827 1.18954 0.97703 0.81883 0.91148 1.42312 1.83216 1.08025 1.03515 1.19268 1.38521 0.86311 0.92913 0.90821 1.24765 1.02610 0.98382 0.95205 1.69687 1.55711 1.35179 0.97433 0.86091 0.77645 0.84964 0.77311 1.20453 1.21913 1.21850 1.75109 1.22481 1.01425 1.12796 1.78285 1.00586 1.08098 1.20524 1.22176 1.00564 0.83775 0.96243 0.88917 0.93590 0.93580 0.90693 0.90936 0.90716 0.90625 0.88140 0.88990 0.90711 0.89456 0.89840 0.79560 0.94321 0.94481 0.78116 0.93553 0.89527 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.62 9.89 -55.01 -0.54 -4.17 16 3 C 0.07 0.55 2.29 -27.88 -0.06 0.49 16 4 H 0.09 0.58 6.68 -51.93 -0.35 0.23 16 5 C -0.17 -1.11 9.21 37.16 0.34 -0.77 16 6 C 0.52 5.22 7.05 -10.98 -0.08 5.14 16 7 O -0.51 -7.11 15.94 -14.22 -0.23 -7.34 16 8 N -0.61 -4.54 2.97 -172.77 -0.51 -5.06 16 9 C 0.11 0.68 6.44 -3.71 -0.02 0.65 16 10 C -0.13 -0.71 6.08 -26.61 -0.16 -0.88 16 11 C -0.13 -0.91 4.78 -26.69 -0.13 -1.04 16 12 C 0.14 1.13 3.27 -67.81 -0.22 0.90 16 13 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 14 N -0.30 -3.70 3.26 -54.64 -0.18 -3.87 16 15 C -0.04 -0.56 10.63 -17.05 -0.18 -0.74 16 16 C 0.00 -0.05 6.62 -82.77 -0.55 -0.60 16 17 C 0.23 4.69 6.82 -5.19 -0.04 4.65 16 18 N -0.73 -18.55 5.59 -61.09 -0.34 -18.89 16 19 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 23 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 N -0.25 -4.82 12.41 33.29 0.41 -4.41 16 28 N -0.10 -1.57 13.17 60.35 0.79 -0.78 16 29 C 0.10 0.65 4.74 -3.71 -0.02 0.63 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.23 7.76 -51.93 -0.40 -0.17 16 32 H 0.05 0.26 8.09 -51.93 -0.42 -0.16 16 33 H 0.07 0.41 7.76 -51.93 -0.40 0.01 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.40 6.16 -51.93 -0.32 0.08 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.77 7.00 -51.93 -0.36 0.40 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.50 7.25 -51.93 -0.38 0.12 16 42 H 0.19 1.93 7.35 -52.48 -0.39 1.54 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.39 10.66 7.66 -40.82 -0.31 10.35 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.10 0.62 4.97 -51.93 -0.26 0.36 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -36.57 389.60 -6.66 -43.22 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.36 Total: 3.41 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.27 Total: 2.44 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.90 Total: -60.66 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.77 Total: -11.50 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.57 -6.66 -43.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185883401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.335 kcal (2) G-P(sol) polarization free energy of solvation -36.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds