Wall clock time and date at job start Tue Mar 31 2020 20:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00208 * 2 1 4 4 H 1.08995 * 109.47257 * 330.00144 * 3 2 1 5 5 C 1.52999 * 109.47156 * 90.00160 * 3 2 1 6 6 C 1.50706 * 109.46966 * 209.99766 * 3 2 1 7 7 O 1.21280 * 119.99697 * 351.89716 * 6 3 2 8 8 N 1.34771 * 119.99832 * 171.88964 * 6 3 2 9 9 C 1.46925 * 120.62987 * 175.10988 * 8 6 3 10 10 C 1.53187 * 108.77583 * 126.41771 * 9 8 6 11 11 C 1.53044 * 109.31424 * 54.63725 * 10 9 8 12 12 C 1.53045 * 109.53383 * 298.63656 * 11 10 9 13 13 H 1.09002 * 109.49461 * 301.40973 * 12 11 10 14 14 N 1.46500 * 109.52076 * 181.33265 * 12 11 10 15 15 C 1.35305 * 125.86762 * 324.79529 * 14 12 11 16 16 C 1.35358 * 106.17684 * 179.90594 * 15 14 12 17 17 C 1.50704 * 126.75378 * 180.12318 * 16 15 14 18 18 N 1.46503 * 109.46881 * 95.24647 * 17 16 15 19 19 C 1.36934 * 119.99601 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00615 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99502 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00480 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99782 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47224 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47361 * 120.00064 * 23 21 19 26 26 H 1.48507 * 109.46992 * 239.99750 * 23 21 19 27 27 N 1.33768 * 106.49404 * 0.35307 * 16 15 14 28 28 N 1.28634 * 108.88534 * 359.77176 * 27 16 15 29 29 C 1.46929 * 120.63158 * 355.14081 * 8 6 3 30 30 H 1.08994 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47219 * 300.00687 * 1 2 3 32 32 H 1.09007 * 109.46991 * 59.99539 * 1 2 3 33 33 H 1.09001 * 109.47028 * 306.51884 * 5 3 2 34 34 H 1.09000 * 109.47062 * 66.51951 * 5 3 2 35 35 H 1.08999 * 109.47434 * 186.52342 * 5 3 2 36 36 H 1.09003 * 109.59087 * 246.20499 * 9 8 6 37 37 H 1.09003 * 109.58797 * 6.63127 * 9 8 6 38 38 H 1.09006 * 109.50284 * 174.59144 * 10 9 8 39 39 H 1.09006 * 109.49702 * 294.65476 * 10 9 8 40 40 H 1.08995 * 109.46166 * 178.61924 * 11 10 9 41 41 H 1.08993 * 109.46092 * 58.65321 * 11 10 9 42 42 H 1.08004 * 126.91938 * 0.02562 * 15 14 12 43 43 H 1.09000 * 109.47060 * 215.24443 * 17 16 15 44 44 H 1.08992 * 109.47075 * 335.25029 * 17 16 15 45 45 H 0.97007 * 119.99766 * 359.97438 * 18 17 16 46 46 H 0.97001 * 120.00386 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.58719 * 113.79619 * 29 8 6 48 48 H 1.09002 * 109.58577 * 353.36481 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.8163 0.1992 -1.0413 8 7 3.9959 2.4095 -0.9781 9 6 5.3391 2.3806 -1.5730 10 6 5.3395 3.2532 -2.8321 11 6 4.8397 4.6553 -2.4764 12 6 3.4056 4.5689 -1.9490 13 1 2.7663 4.1150 -2.7062 14 7 2.9162 5.9144 -1.6386 15 6 3.6563 6.9319 -1.1410 16 6 2.8131 7.9826 -1.0100 17 6 3.1578 9.3570 -0.4967 18 7 3.4521 10.2409 -1.6273 19 6 3.7926 11.5482 -1.4037 20 1 3.8446 11.9277 -0.3939 21 6 4.0709 12.3859 -2.4751 22 7 4.0081 11.9235 -3.7057 23 14 4.5362 14.1691 -2.1701 24 1 4.5360 14.4379 -0.7097 25 1 5.8904 14.4288 -2.7215 26 1 3.5514 15.0586 -2.8368 27 7 1.6125 7.5596 -1.4210 28 7 1.7071 6.3301 -1.7870 29 6 3.3832 3.7112 -0.6799 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.2780 1.6912 1.9889 34 1 2.9711 1.1459 1.9215 35 1 2.5519 2.8088 1.4448 36 1 6.0639 2.7703 -0.8582 37 1 5.5992 1.3559 -1.8385 38 1 6.3524 3.3180 -3.2296 39 1 4.6823 2.8114 -3.5811 40 1 4.8622 5.2853 -3.3655 41 1 5.4831 5.0865 -1.7096 42 1 4.7087 6.9108 -0.8989 43 1 2.3146 9.7564 0.0669 44 1 4.0313 9.2940 0.1521 45 1 3.4057 9.9000 -2.5343 46 1 4.2022 12.5089 -4.4544 47 1 3.9485 4.2093 0.1078 48 1 2.3528 3.5645 -0.3562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185883401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:50 Heat of formation + Delta-G solvation = 16.819782 kcal Electronic energy + Delta-G solvation = -29579.066304 eV Core-core repulsion = 25478.323203 eV Total energy + Delta-G solvation = -4100.743101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.29129 -41.65175 -39.35383 -38.37198 -36.80452 -35.51299 -34.31663 -33.62694 -32.16967 -31.58859 -31.02976 -27.82403 -27.67885 -27.02299 -25.44308 -24.89505 -24.60837 -22.96527 -22.03615 -21.63747 -20.30248 -19.34383 -18.80127 -18.12521 -18.05985 -17.27569 -16.88321 -16.56939 -16.44239 -16.06589 -15.95156 -15.73048 -15.49368 -15.43520 -15.14540 -14.86442 -14.38213 -14.28645 -14.15670 -14.05011 -13.71578 -13.61803 -13.30785 -13.01956 -12.86580 -12.83721 -12.76566 -12.57829 -12.36042 -12.22330 -12.15053 -12.01033 -11.92476 -11.84451 -11.69830 -11.24172 -11.01645 -10.94663 -10.60345 -10.20406 -9.89641 -8.99134 -7.91574 -5.21324 0.60837 1.10628 1.37575 1.48395 1.52322 1.54420 1.63189 1.70874 2.61229 2.76632 3.12122 3.26673 3.34069 3.41119 3.50776 3.70927 3.73872 3.88423 3.91474 3.96233 3.98892 4.12454 4.22311 4.26285 4.35961 4.40059 4.46971 4.48011 4.54691 4.57448 4.64318 4.71634 4.76258 4.81257 4.84847 4.90801 4.97926 5.09427 5.15477 5.17472 5.23774 5.29076 5.54095 5.67687 5.90716 6.13107 6.28561 6.92732 7.35525 7.54177 8.07612 8.32552 9.32528 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.002238 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.785332 B =12506.753493 C =13234.655797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.392 6.392 3 C 0.064 3.936 4 H 0.103 0.897 5 C -0.168 4.168 6 C 0.519 3.481 7 O -0.560 6.560 8 N -0.600 5.600 9 C 0.103 3.897 10 C -0.118 4.118 11 C -0.129 4.129 12 C 0.130 3.870 13 H 0.113 0.887 14 N -0.278 5.278 15 C -0.012 4.012 16 C -0.036 4.036 17 C 0.234 3.766 18 N -0.739 5.739 19 C -0.238 4.238 20 H 0.085 0.915 21 C -0.079 4.079 22 N -0.973 5.973 23 Si 0.976 3.024 24 H -0.261 1.261 25 H -0.292 1.292 26 H -0.299 1.299 27 N -0.295 5.295 28 N -0.111 5.111 29 C 0.102 3.898 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.226 0.774 43 H 0.028 0.972 44 H 0.065 0.935 45 H 0.370 0.630 46 H 0.250 0.750 47 H 0.107 0.893 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.284 -24.972 9.473 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.311 6.311 3 C 0.003 3.997 4 H 0.121 0.879 5 C -0.226 4.226 6 C 0.307 3.693 7 O -0.437 6.437 8 N -0.334 5.334 9 C -0.018 4.018 10 C -0.157 4.157 11 C -0.168 4.168 12 C 0.028 3.972 13 H 0.131 0.869 14 N -0.072 5.072 15 C -0.164 4.164 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.382 5.382 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.271 4.271 22 N -0.624 5.624 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.220 1.220 26 H -0.226 1.226 27 N -0.162 5.162 28 N -0.089 5.089 29 C -0.023 4.023 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.243 0.757 43 H 0.046 0.954 44 H 0.083 0.917 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.125 0.875 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.224 -25.997 8.986 27.507 hybrid contribution 0.711 1.344 -0.490 1.598 sum 0.935 -24.653 8.496 26.093 Atomic orbital electron populations 1.23104 0.78649 1.04354 1.01358 1.87995 1.21834 1.26077 1.95188 1.22111 0.92607 0.86987 0.98004 0.87912 1.22283 1.04374 1.02537 0.93391 1.20812 0.86803 0.83284 0.78374 1.90703 1.69053 1.30697 1.53259 1.47943 1.18239 1.04561 1.62679 1.21898 0.82235 1.02139 0.95508 1.21838 1.04060 0.92595 0.97218 1.22000 0.92019 0.99476 1.03271 1.22231 0.98853 0.76490 0.99601 0.86867 1.47508 1.06774 1.11989 1.40953 1.23714 1.01389 0.87088 1.04196 1.22269 0.90317 0.98488 1.06372 1.18987 0.98126 0.82463 0.89741 1.42530 1.83180 1.08238 1.04261 1.19727 1.36588 0.87385 0.93299 0.89681 1.25618 1.03766 1.02649 0.95073 1.69853 1.57827 1.36478 0.98255 0.85025 0.76707 0.79748 0.77974 1.18489 1.21954 1.22636 1.75047 1.23960 1.02858 1.14360 1.78195 1.02292 1.07302 1.21131 1.22217 1.01385 0.83003 0.95659 0.88224 0.92045 0.93087 0.89604 0.91977 0.89290 0.88430 0.89639 0.87103 0.91643 0.90615 0.87949 0.75718 0.95365 0.91741 0.79857 0.94162 0.87473 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.48 16 2 O -0.39 -7.74 9.89 -130.07 -1.29 -9.03 16 3 C 0.06 0.97 2.29 29.85 0.07 1.04 16 4 H 0.10 1.19 6.68 -2.39 -0.02 1.17 16 5 C -0.17 -1.84 9.21 71.98 0.66 -1.18 16 6 C 0.52 9.94 7.05 87.66 0.62 10.56 16 7 O -0.56 -15.76 15.94 15.88 0.25 -15.51 16 8 N -0.60 -7.72 2.97 -818.90 -2.43 -10.16 16 9 C 0.10 1.08 6.44 86.36 0.56 1.64 16 10 C -0.12 -1.02 6.08 30.67 0.19 -0.83 16 11 C -0.13 -1.36 4.78 30.62 0.15 -1.21 16 12 C 0.13 1.82 3.27 45.07 0.15 1.97 16 13 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 14 N -0.28 -6.28 3.26 -326.79 -1.06 -7.34 16 15 C -0.01 -0.30 10.63 83.49 0.89 0.59 16 16 C -0.04 -1.24 6.62 41.60 0.28 -0.97 16 17 C 0.23 9.21 6.82 85.63 0.58 9.79 16 18 N -0.74 -37.59 5.59 -347.18 -1.94 -39.53 16 19 C -0.24 -13.07 9.99 84.03 0.84 -12.23 16 20 H 0.09 4.37 7.83 -2.91 -0.02 4.34 16 21 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 22 N -0.97 -60.06 13.06 21.65 0.28 -59.77 16 23 Si 0.98 45.62 29.55 68.60 2.03 47.65 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 27 N -0.30 -11.29 12.41 -48.59 -0.60 -11.89 16 28 N -0.11 -3.50 13.17 37.02 0.49 -3.01 16 29 C 0.10 1.05 4.74 86.36 0.41 1.46 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.52 7.76 -2.38 -0.02 0.50 16 32 H 0.05 0.53 8.09 -2.38 -0.02 0.51 16 33 H 0.09 0.75 7.76 -2.39 -0.02 0.73 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.69 6.16 -2.39 -0.01 0.67 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 1.23 7.00 -2.39 -0.02 1.21 16 38 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 0.74 7.25 -2.39 -0.02 0.72 16 42 H 0.23 3.54 7.35 -2.91 -0.02 3.52 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.37 20.73 7.66 -92.70 -0.71 20.02 16 46 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 47 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.10 1.01 4.97 -2.39 -0.01 1.00 16 Total: -1.00 -81.48 389.60 3.06 -78.42 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.27 Total: 22.12 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 7.07 Total: 8.04 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -5.27 Total: -131.70 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.03 Total: -24.53 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -81.48 3.06 -78.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185883401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.237 kcal (2) G-P(sol) polarization free energy of solvation -81.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds