Wall clock time and date at job start Tue Mar 31 2020 20:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00348 * 2 1 4 4 H 1.09001 * 109.47153 * 29.99344 * 3 2 1 5 5 C 1.52999 * 109.46999 * 269.99570 * 3 2 1 6 6 C 1.50696 * 109.47234 * 149.99354 * 3 2 1 7 7 O 1.21280 * 120.00021 * 12.43239 * 6 3 2 8 8 N 1.34778 * 119.99944 * 192.42440 * 6 3 2 9 9 C 1.46930 * 120.62847 * 175.24629 * 8 6 3 10 10 C 1.53191 * 108.77337 * 233.60676 * 9 8 6 11 11 C 1.53036 * 109.31283 * 305.36634 * 10 9 8 12 12 C 1.53040 * 109.53782 * 61.36473 * 11 10 9 13 13 H 1.08999 * 109.49872 * 58.58923 * 12 11 10 14 14 N 1.46507 * 109.49860 * 178.68161 * 12 11 10 15 15 C 1.35320 * 125.86482 * 34.99997 * 14 12 11 16 16 C 1.35345 * 106.17114 * 180.02562 * 15 14 12 17 17 C 1.50701 * 126.74989 * 180.02562 * 16 15 14 18 18 N 1.46495 * 109.47334 * 94.99533 * 17 16 15 19 19 C 1.36941 * 120.00139 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99876 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00204 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00229 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 119.99882 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46811 * 89.99995 * 23 21 19 25 25 H 1.48495 * 109.46999 * 210.00027 * 23 21 19 26 26 H 1.48499 * 109.46945 * 330.00083 * 23 21 19 27 27 N 1.33776 * 106.49930 * 359.97438 * 16 15 14 28 28 N 1.28633 * 108.88504 * 359.73953 * 27 16 15 29 29 C 1.46921 * 120.63189 * 355.24469 * 8 6 3 30 30 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47626 * 300.00618 * 1 2 3 32 32 H 1.09010 * 109.46529 * 60.00216 * 1 2 3 33 33 H 1.09002 * 109.46816 * 65.38034 * 5 3 2 34 34 H 1.08999 * 109.46951 * 185.37872 * 5 3 2 35 35 H 1.08996 * 109.47133 * 305.38042 * 5 3 2 36 36 H 1.09004 * 109.58812 * 113.82017 * 9 8 6 37 37 H 1.08995 * 109.58718 * 353.39703 * 9 8 6 38 38 H 1.09000 * 109.49567 * 185.41648 * 10 9 8 39 39 H 1.08999 * 109.49339 * 65.32084 * 10 9 8 40 40 H 1.09004 * 109.45911 * 181.38644 * 11 10 9 41 41 H 1.08999 * 109.46180 * 301.34341 * 11 10 9 42 42 H 1.07999 * 126.91433 * 0.02562 * 15 14 12 43 43 H 1.09003 * 109.46922 * 214.99924 * 17 16 15 44 44 H 1.08996 * 109.47053 * 334.99517 * 17 16 15 45 45 H 0.97001 * 120.00479 * 0.02562 * 18 17 16 46 46 H 0.97000 * 120.00269 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.58753 * 6.60309 * 29 8 6 48 48 H 1.09007 * 109.58870 * 246.18109 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2178 1.7712 -1.4425 6 6 3.3386 1.2638 0.7105 7 8 3.8535 0.1973 0.9716 8 7 3.9544 2.4119 1.0557 9 6 5.1970 2.3885 1.8394 10 6 5.0179 3.2775 3.0741 11 6 4.5799 4.6756 2.6319 12 6 3.2371 4.5847 1.9033 13 1 2.4932 4.1418 2.5655 14 7 2.8034 5.9271 1.5080 15 6 3.6124 6.9377 1.1138 16 6 2.8011 7.9873 0.8455 17 6 3.2221 9.3537 0.3694 18 7 3.1314 9.4112 -1.0916 19 6 3.4658 10.5624 -1.7536 20 1 3.7969 11.4277 -1.1987 21 6 3.3794 10.6170 -3.1379 22 7 3.7013 11.7233 -3.7742 23 14 2.8061 9.1205 -4.0978 24 1 1.3298 9.1671 -4.2519 25 1 3.4439 9.1184 -5.4387 26 1 3.1887 7.8865 -3.3656 27 7 1.5519 7.5728 1.0850 28 7 1.5869 6.3461 1.4704 29 6 3.3960 3.7106 0.6554 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.2494 1.8931 -1.9278 34 1 2.7475 2.7239 -1.4440 35 1 2.8043 1.0286 -1.9833 36 1 6.0191 2.7676 1.2323 37 1 5.4122 1.3670 2.1528 38 1 5.9628 3.3459 3.6133 39 1 4.2573 2.8468 3.7252 40 1 4.4756 5.3172 3.5069 41 1 5.3293 5.0957 1.9611 42 1 4.6888 6.9119 1.0301 43 1 2.5662 10.1080 0.8042 44 1 4.2500 9.5450 0.6774 45 1 2.8337 8.6342 -1.5901 46 1 3.6405 11.7616 -4.7416 47 1 2.4229 3.5614 0.1875 48 1 4.0712 4.1975 -0.0483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185883402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:54 Heat of formation + Delta-G solvation = 47.568909 kcal Electronic energy + Delta-G solvation = -29929.613333 eV Core-core repulsion = 25830.203614 eV Total energy + Delta-G solvation = -4099.409719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.27573 -40.99387 -38.73176 -37.65385 -35.37310 -34.50451 -33.67286 -32.04556 -31.56665 -30.42161 -30.26257 -27.29598 -26.60823 -26.22516 -24.73236 -24.12661 -22.57806 -22.14727 -20.95000 -20.83519 -19.73417 -18.22118 -17.90703 -17.37730 -17.18094 -16.43733 -16.10045 -15.83473 -15.44499 -15.22400 -15.06118 -14.68386 -14.59792 -14.37107 -14.08246 -13.80046 -13.65785 -13.55960 -13.08854 -13.05229 -12.82981 -12.74712 -12.44344 -12.30069 -12.13903 -11.83450 -11.73850 -11.67292 -11.58232 -11.43690 -11.14296 -10.91335 -10.62266 -10.48799 -10.23200 -10.15673 -9.89948 -9.62426 -9.31824 -9.07344 -8.93359 -7.27080 -5.78846 -3.14839 1.55465 1.88188 2.07431 2.35507 2.68276 3.32443 3.35103 3.40484 3.44240 3.70021 3.88085 3.91619 4.17781 4.27931 4.32888 4.41827 4.47319 4.53787 4.57852 4.63374 4.75609 4.87414 4.93713 4.96518 5.01821 5.05981 5.09972 5.13291 5.21630 5.24994 5.27204 5.30780 5.38562 5.50826 5.54018 5.63832 5.66748 5.68784 5.78999 6.19163 6.48414 6.50645 6.54491 6.62427 6.73687 7.61637 7.95481 8.39747 8.61656 9.17621 9.90032 10.09790 11.39297 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.003015 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.765782 B = 9284.209609 C =10386.549607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.068 3.932 4 H 0.087 0.913 5 C -0.178 4.178 6 C 0.524 3.476 7 O -0.511 6.511 8 N -0.609 5.609 9 C 0.106 3.894 10 C -0.128 4.128 11 C -0.132 4.132 12 C 0.135 3.865 13 H 0.116 0.884 14 N -0.297 5.297 15 C -0.040 4.040 16 C -0.010 4.010 17 C 0.237 3.763 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.094 0.906 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.884 3.116 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.280 1.280 27 N -0.251 5.251 28 N -0.095 5.095 29 C 0.092 3.908 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.189 0.811 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.362 0.638 46 H 0.260 0.740 47 H 0.101 0.899 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -23.367 13.958 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.278 6.278 3 C 0.007 3.993 4 H 0.105 0.895 5 C -0.236 4.236 6 C 0.311 3.689 7 O -0.385 6.385 8 N -0.346 5.346 9 C -0.015 4.015 10 C -0.167 4.167 11 C -0.170 4.170 12 C 0.032 3.968 13 H 0.134 0.866 14 N -0.091 5.091 15 C -0.191 4.191 16 C -0.147 4.147 17 C 0.109 3.891 18 N -0.395 5.395 19 C -0.374 4.374 20 H 0.111 0.889 21 C -0.188 4.188 22 N -0.580 5.580 23 Si 0.715 3.285 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.207 1.207 27 N -0.119 5.119 28 N -0.073 5.073 29 C -0.032 4.032 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.206 0.794 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.195 0.805 46 H 0.070 0.930 47 H 0.119 0.881 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.222 -24.287 14.298 28.183 hybrid contribution 0.455 -0.460 -1.021 1.209 sum 0.233 -24.746 13.276 28.084 Atomic orbital electron populations 1.22927 0.80184 1.03448 1.00398 1.88036 1.20001 1.24761 1.94977 1.21953 0.93185 0.87147 0.97042 0.89506 1.22365 1.04029 1.02449 0.94735 1.20418 0.86379 0.83385 0.78742 1.90725 1.65691 1.28787 1.53256 1.47938 1.26122 1.04934 1.55570 1.21755 0.85363 1.02478 0.91934 1.21903 1.03331 0.93686 0.97783 1.21967 0.94628 0.98999 1.01447 1.21909 0.99172 0.78346 0.97415 0.86580 1.47294 1.05909 1.11267 1.44648 1.23386 0.99806 0.88510 1.07384 1.22543 0.89033 0.99103 1.04048 1.18920 0.98308 0.86570 0.85346 1.42642 1.82279 1.14104 1.00519 1.19037 1.37478 0.90819 0.90036 0.88869 1.24631 1.01341 0.96697 0.96180 1.69691 1.54501 1.25901 1.07925 0.86556 0.78876 0.83367 0.79740 1.20944 1.21708 1.20665 1.75125 1.21354 1.01834 1.13573 1.78294 1.01384 1.07814 1.19839 1.22247 1.01609 0.83749 0.95628 0.88914 0.93643 0.93518 0.90651 0.90676 0.90563 0.90587 0.88129 0.88962 0.90746 0.89685 0.89755 0.79362 0.93429 0.93597 0.80535 0.92992 0.88124 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.28 16 2 O -0.36 -3.80 9.91 -54.83 -0.54 -4.34 16 3 C 0.07 0.61 2.28 -27.89 -0.06 0.54 16 4 H 0.09 0.62 6.88 -51.93 -0.36 0.26 16 5 C -0.18 -1.41 9.10 37.16 0.34 -1.07 16 6 C 0.52 5.42 7.04 -10.99 -0.08 5.34 16 7 O -0.51 -7.20 15.98 -14.04 -0.22 -7.43 16 8 N -0.61 -4.68 2.97 -172.77 -0.51 -5.19 16 9 C 0.11 0.65 6.42 -3.71 -0.02 0.63 16 10 C -0.13 -0.56 6.08 -26.61 -0.16 -0.72 16 11 C -0.13 -0.69 4.78 -26.69 -0.13 -0.82 16 12 C 0.14 1.00 3.27 -67.81 -0.22 0.78 16 13 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 14 N -0.30 -3.40 3.26 -54.64 -0.18 -3.58 16 15 C -0.04 -0.51 10.62 -17.05 -0.18 -0.69 16 16 C -0.01 -0.16 6.62 -82.78 -0.55 -0.71 16 17 C 0.24 4.54 6.82 -5.20 -0.04 4.50 16 18 N -0.75 -17.77 5.40 -61.09 -0.33 -18.10 16 19 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 22 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 23 Si 0.88 22.17 27.74 -169.99 -4.71 17.45 16 24 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 27 N -0.25 -4.53 12.41 33.29 0.41 -4.12 16 28 N -0.09 -1.44 13.17 60.35 0.79 -0.64 16 29 C 0.09 0.67 4.80 -3.72 -0.02 0.65 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 32 H 0.05 0.27 8.00 -51.92 -0.42 -0.14 16 33 H 0.07 0.52 8.00 -51.93 -0.42 0.11 16 34 H 0.07 0.55 5.96 -51.93 -0.31 0.24 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.74 7.03 -51.93 -0.37 0.37 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.40 7.24 -51.93 -0.38 0.03 16 42 H 0.19 1.74 7.34 -52.49 -0.39 1.36 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.36 8.63 5.52 -40.82 -0.23 8.40 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.10 0.73 4.74 -51.93 -0.25 0.49 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -36.81 386.75 -6.31 -43.12 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.33 Total: 2.38 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.28 Total: 2.86 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.96 Total: -59.87 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.77 Total: -11.77 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.81 -6.31 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185883402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.691 kcal (2) G-P(sol) polarization free energy of solvation -36.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds