Wall clock time and date at job start Tue Mar 31 2020 20:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00348 * 2 1 4 4 H 1.09001 * 109.47153 * 29.99344 * 3 2 1 5 5 C 1.52999 * 109.46999 * 269.99570 * 3 2 1 6 6 C 1.50696 * 109.47234 * 149.99354 * 3 2 1 7 7 O 1.21280 * 120.00021 * 12.43239 * 6 3 2 8 8 N 1.34778 * 119.99944 * 192.42440 * 6 3 2 9 9 C 1.46930 * 120.62847 * 175.24629 * 8 6 3 10 10 C 1.53191 * 108.77337 * 233.60676 * 9 8 6 11 11 C 1.53036 * 109.31283 * 305.36634 * 10 9 8 12 12 C 1.53040 * 109.53782 * 61.36473 * 11 10 9 13 13 H 1.08999 * 109.49872 * 58.58923 * 12 11 10 14 14 N 1.46507 * 109.49860 * 178.68161 * 12 11 10 15 15 C 1.35320 * 125.86482 * 34.99997 * 14 12 11 16 16 C 1.35345 * 106.17114 * 180.02562 * 15 14 12 17 17 C 1.50701 * 126.74989 * 180.02562 * 16 15 14 18 18 N 1.46495 * 109.47334 * 94.99533 * 17 16 15 19 19 C 1.36941 * 120.00139 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99876 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00204 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00229 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 119.99882 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46811 * 89.99995 * 23 21 19 25 25 H 1.48495 * 109.46999 * 210.00027 * 23 21 19 26 26 H 1.48499 * 109.46945 * 330.00083 * 23 21 19 27 27 N 1.33776 * 106.49930 * 359.97438 * 16 15 14 28 28 N 1.28633 * 108.88504 * 359.73953 * 27 16 15 29 29 C 1.46921 * 120.63189 * 355.24469 * 8 6 3 30 30 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47626 * 300.00618 * 1 2 3 32 32 H 1.09010 * 109.46529 * 60.00216 * 1 2 3 33 33 H 1.09002 * 109.46816 * 65.38034 * 5 3 2 34 34 H 1.08999 * 109.46951 * 185.37872 * 5 3 2 35 35 H 1.08996 * 109.47133 * 305.38042 * 5 3 2 36 36 H 1.09004 * 109.58812 * 113.82017 * 9 8 6 37 37 H 1.08995 * 109.58718 * 353.39703 * 9 8 6 38 38 H 1.09000 * 109.49567 * 185.41648 * 10 9 8 39 39 H 1.08999 * 109.49339 * 65.32084 * 10 9 8 40 40 H 1.09004 * 109.45911 * 181.38644 * 11 10 9 41 41 H 1.08999 * 109.46180 * 301.34341 * 11 10 9 42 42 H 1.07999 * 126.91433 * 0.02562 * 15 14 12 43 43 H 1.09003 * 109.46922 * 214.99924 * 17 16 15 44 44 H 1.08996 * 109.47053 * 334.99517 * 17 16 15 45 45 H 0.97001 * 120.00479 * 0.02562 * 18 17 16 46 46 H 0.97000 * 120.00269 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.58753 * 6.60309 * 29 8 6 48 48 H 1.09007 * 109.58870 * 246.18109 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2178 1.7712 -1.4425 6 6 3.3386 1.2638 0.7105 7 8 3.8535 0.1973 0.9716 8 7 3.9544 2.4119 1.0557 9 6 5.1970 2.3885 1.8394 10 6 5.0179 3.2775 3.0741 11 6 4.5799 4.6756 2.6319 12 6 3.2371 4.5847 1.9033 13 1 2.4932 4.1418 2.5655 14 7 2.8034 5.9271 1.5080 15 6 3.6124 6.9377 1.1138 16 6 2.8011 7.9873 0.8455 17 6 3.2221 9.3537 0.3694 18 7 3.1314 9.4112 -1.0916 19 6 3.4658 10.5624 -1.7536 20 1 3.7969 11.4277 -1.1987 21 6 3.3794 10.6170 -3.1379 22 7 3.7013 11.7233 -3.7742 23 14 2.8061 9.1205 -4.0978 24 1 1.3298 9.1671 -4.2519 25 1 3.4439 9.1184 -5.4387 26 1 3.1887 7.8865 -3.3656 27 7 1.5519 7.5728 1.0850 28 7 1.5869 6.3461 1.4704 29 6 3.3960 3.7106 0.6554 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.2494 1.8931 -1.9278 34 1 2.7475 2.7239 -1.4440 35 1 2.8043 1.0286 -1.9833 36 1 6.0191 2.7676 1.2323 37 1 5.4122 1.3670 2.1528 38 1 5.9628 3.3459 3.6133 39 1 4.2573 2.8468 3.7252 40 1 4.4756 5.3172 3.5069 41 1 5.3293 5.0957 1.9611 42 1 4.6888 6.9119 1.0301 43 1 2.5662 10.1080 0.8042 44 1 4.2500 9.5450 0.6774 45 1 2.8337 8.6342 -1.5901 46 1 3.6405 11.7616 -4.7416 47 1 2.4229 3.5614 0.1875 48 1 4.0712 4.1975 -0.0483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185883402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:53 Heat of formation + Delta-G solvation = 20.791402 kcal Electronic energy + Delta-G solvation = -29930.774493 eV Core-core repulsion = 25830.203614 eV Total energy + Delta-G solvation = -4100.570879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.33657 -41.68776 -39.37415 -38.40816 -36.98478 -35.54394 -34.34423 -33.77591 -32.26121 -31.92367 -31.05276 -27.95476 -27.85374 -27.07268 -25.45053 -24.80445 -24.32914 -22.99936 -22.11670 -21.65279 -20.35881 -19.87531 -18.83016 -18.15066 -18.09644 -17.29586 -16.92769 -16.53941 -16.48859 -16.08786 -16.05746 -15.82093 -15.56631 -15.45974 -15.11475 -14.83418 -14.43209 -14.36827 -14.21324 -14.15399 -13.85762 -13.61713 -13.48664 -13.32557 -12.91844 -12.89522 -12.79661 -12.63414 -12.37497 -12.26098 -12.15030 -12.09393 -11.89641 -11.80247 -11.73475 -11.29727 -11.05539 -10.99761 -10.63011 -10.25851 -9.92513 -9.29722 -8.00425 -5.33855 0.56379 1.10442 1.32509 1.35915 1.41978 1.43730 1.49413 1.67022 2.49613 2.72835 3.10967 3.24944 3.29162 3.30881 3.44645 3.69578 3.72180 3.83409 3.84980 3.90999 3.93814 3.97355 4.08320 4.21115 4.34711 4.37092 4.44737 4.45547 4.47003 4.54078 4.60930 4.69204 4.75872 4.79069 4.84591 4.87489 4.96381 5.03953 5.12629 5.14775 5.21678 5.27463 5.64113 5.78029 5.87120 6.09261 6.22997 6.89364 7.08275 7.49942 7.83109 8.02650 9.20815 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.003015 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.765782 B = 9284.209609 C =10386.549607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.391 6.391 3 C 0.066 3.934 4 H 0.105 0.895 5 C -0.174 4.174 6 C 0.520 3.480 7 O -0.558 6.558 8 N -0.599 5.599 9 C 0.100 3.900 10 C -0.117 4.117 11 C -0.127 4.127 12 C 0.131 3.869 13 H 0.122 0.878 14 N -0.279 5.279 15 C -0.010 4.010 16 C -0.041 4.041 17 C 0.238 3.762 18 N -0.752 5.752 19 C -0.230 4.230 20 H 0.066 0.934 21 C -0.059 4.059 22 N -0.982 5.982 23 Si 0.950 3.050 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.253 1.253 27 N -0.294 5.294 28 N -0.107 5.107 29 C 0.094 3.906 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.228 0.772 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.363 0.637 46 H 0.258 0.742 47 H 0.101 0.899 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -25.078 14.879 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C 0.005 3.995 4 H 0.123 0.877 5 C -0.232 4.232 6 C 0.308 3.692 7 O -0.435 6.435 8 N -0.334 5.334 9 C -0.021 4.021 10 C -0.155 4.155 11 C -0.166 4.166 12 C 0.029 3.971 13 H 0.140 0.860 14 N -0.073 5.073 15 C -0.162 4.162 16 C -0.179 4.179 17 C 0.111 3.889 18 N -0.398 5.398 19 C -0.360 4.360 20 H 0.084 0.916 21 C -0.251 4.251 22 N -0.632 5.632 23 Si 0.778 3.222 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.178 1.178 27 N -0.161 5.161 28 N -0.085 5.085 29 C -0.031 4.031 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.245 0.755 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.196 0.804 46 H 0.067 0.933 47 H 0.119 0.881 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.467 -26.019 15.283 30.179 hybrid contribution 0.261 0.064 -1.161 1.192 sum 0.728 -25.955 14.122 29.557 Atomic orbital electron populations 1.23109 0.78612 1.04404 1.01362 1.87999 1.21871 1.25904 1.95162 1.22071 0.92773 0.87068 0.97592 0.87706 1.22346 1.04517 1.02277 0.94056 1.20759 0.86776 0.83332 0.78360 1.90701 1.66939 1.30469 1.55390 1.47942 1.26178 1.04443 1.54832 1.21936 0.85044 1.02271 0.92824 1.21845 1.04365 0.92546 0.96786 1.22012 0.93322 0.99586 1.01665 1.22265 1.00723 0.76317 0.97763 0.86039 1.47558 1.04840 1.12223 1.42681 1.23775 1.01033 0.87070 1.04325 1.22207 0.89752 0.99103 1.06819 1.18913 0.99126 0.88290 0.82576 1.42657 1.81967 1.12636 1.02505 1.19046 1.35480 0.91357 0.90151 0.91566 1.25402 1.02561 0.99741 0.97405 1.69860 1.56876 1.28433 1.08052 0.85480 0.77790 0.80768 0.78148 1.21359 1.21922 1.17763 1.75072 1.22622 1.03241 1.15117 1.78216 1.02996 1.06956 1.20364 1.22272 1.01943 0.83280 0.95592 0.88124 0.92730 0.92420 0.89593 0.89932 0.91809 0.89112 0.89666 0.86742 0.91117 0.89133 0.88314 0.75516 0.94962 0.91408 0.80421 0.93307 0.88121 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.39 -8.01 9.91 -130.24 -1.29 -9.30 16 3 C 0.07 1.09 2.28 29.85 0.07 1.15 16 4 H 0.11 1.27 6.88 -2.39 -0.02 1.26 16 5 C -0.17 -2.48 9.10 71.98 0.65 -1.82 16 6 C 0.52 10.20 7.04 87.66 0.62 10.82 16 7 O -0.56 -15.77 15.98 15.71 0.25 -15.52 16 8 N -0.60 -7.80 2.97 -818.91 -2.43 -10.23 16 9 C 0.10 0.96 6.42 86.36 0.55 1.52 16 10 C -0.12 -0.58 6.08 30.67 0.19 -0.40 16 11 C -0.13 -0.76 4.78 30.62 0.15 -0.61 16 12 C 0.13 1.45 3.27 45.07 0.15 1.60 16 13 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 14 N -0.28 -5.40 3.26 -326.80 -1.06 -6.46 16 15 C -0.01 -0.22 10.62 83.49 0.89 0.67 16 16 C -0.04 -1.26 6.62 41.59 0.28 -0.98 16 17 C 0.24 8.78 6.82 85.63 0.58 9.37 16 18 N -0.75 -34.64 5.40 -347.19 -1.87 -36.51 16 19 C -0.23 -12.82 10.47 84.03 0.88 -11.94 16 20 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 21 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 22 N -0.98 -62.17 13.97 21.65 0.30 -61.86 16 23 Si 0.95 45.33 27.74 68.60 1.90 47.23 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 27 N -0.29 -10.14 12.41 -48.60 -0.60 -10.74 16 28 N -0.11 -2.99 13.17 37.02 0.49 -2.51 16 29 C 0.09 1.03 4.80 86.36 0.41 1.44 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.56 8.08 -2.39 -0.02 0.54 16 32 H 0.06 0.58 8.00 -2.38 -0.02 0.56 16 33 H 0.09 1.02 8.00 -2.39 -0.02 1.00 16 34 H 0.08 1.02 5.96 -2.39 -0.01 1.00 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.08 1.15 7.03 -2.39 -0.02 1.13 16 38 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.37 7.24 -2.39 -0.02 0.36 16 42 H 0.23 2.86 7.34 -2.91 -0.02 2.83 16 43 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.36 16.47 5.52 -92.71 -0.51 15.96 16 46 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 47 H 0.10 1.15 4.74 -2.38 -0.01 1.14 16 48 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -82.20 386.75 3.19 -79.01 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.41 Total: 17.59 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 7.11 Total: 9.31 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.19 Total: -128.32 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -1.04 Total: -24.82 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Total: -82.20 3.19 -79.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185883402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.803 kcal (2) G-P(sol) polarization free energy of solvation -82.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds