Wall clock time and date at job start Tue Mar 31 2020 20:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99662 * 2 1 4 4 H 1.09001 * 109.47152 * 330.00526 * 3 2 1 5 5 C 1.52998 * 109.46863 * 90.00138 * 3 2 1 6 6 C 1.50698 * 109.47263 * 209.99848 * 3 2 1 7 7 O 1.21285 * 119.99620 * 355.00483 * 6 3 2 8 8 N 1.34778 * 120.00102 * 175.00221 * 6 3 2 9 9 C 1.46927 * 120.62805 * 359.97438 * 8 6 3 10 10 C 1.53193 * 108.77663 * 233.63128 * 9 8 6 11 11 C 1.53046 * 109.31028 * 305.36644 * 10 9 8 12 12 C 1.53046 * 109.53579 * 61.36644 * 11 10 9 13 13 H 1.09004 * 109.49895 * 58.58445 * 12 11 10 14 14 N 1.46497 * 109.49298 * 178.68227 * 12 11 10 15 15 C 1.35314 * 125.87351 * 34.99925 * 14 12 11 16 16 C 1.35349 * 106.17582 * 179.97438 * 15 14 12 17 17 C 1.50699 * 126.74803 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.46783 * 95.00601 * 17 16 15 19 19 C 1.36937 * 120.00083 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99766 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00386 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00633 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99674 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47482 * 89.99877 * 23 21 19 25 25 H 1.48502 * 109.47057 * 210.00007 * 23 21 19 26 26 H 1.48497 * 109.47146 * 329.99700 * 23 21 19 27 27 N 1.33771 * 106.50093 * 0.02562 * 16 15 14 28 28 N 1.28635 * 108.88135 * 359.73178 * 27 16 15 29 29 C 1.46919 * 120.63015 * 180.02562 * 8 6 3 30 30 H 1.09003 * 109.47270 * 60.00022 * 1 2 3 31 31 H 1.09003 * 109.46709 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47003 * 299.99381 * 1 2 3 33 33 H 1.09008 * 109.47328 * 299.99971 * 5 3 2 34 34 H 1.09001 * 109.47704 * 59.99757 * 5 3 2 35 35 H 1.08999 * 109.47486 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.58699 * 353.41886 * 9 8 6 37 37 H 1.08998 * 109.58257 * 113.84839 * 9 8 6 38 38 H 1.09001 * 109.49998 * 185.42005 * 10 9 8 39 39 H 1.08998 * 109.50010 * 65.31705 * 10 9 8 40 40 H 1.08993 * 109.46296 * 301.34732 * 11 10 9 41 41 H 1.09000 * 109.45696 * 181.38288 * 11 10 9 42 42 H 1.08002 * 126.90920 * 0.02562 * 15 14 12 43 43 H 1.09003 * 109.47278 * 215.00329 * 17 16 15 44 44 H 1.09000 * 109.47522 * 335.00365 * 17 16 15 45 45 H 0.96995 * 120.00437 * 0.02562 * 18 17 16 46 46 H 0.96999 * 120.00567 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.59216 * 6.57787 * 29 8 6 48 48 H 1.09004 * 109.70105 * 246.22477 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2641 -0.7104 7 8 3.7897 0.2047 -1.0914 8 7 4.0254 2.4042 -0.9223 9 6 3.4916 3.6952 -0.4671 10 6 3.4635 4.6633 -1.6540 11 6 4.8603 4.7441 -2.2744 12 6 5.2731 3.3626 -2.7874 13 1 4.5470 3.0156 -3.5226 14 7 6.5969 3.4475 -3.4091 15 6 7.6123 4.2463 -3.0065 16 6 8.6396 4.0065 -3.8544 17 6 10.0017 4.6506 -3.8254 18 7 10.9298 3.7967 -3.0799 19 6 12.2350 4.1793 -2.9210 20 1 12.5801 5.1108 -3.3449 21 6 13.1143 3.3705 -2.2142 22 7 14.3687 3.7385 -2.0610 23 14 12.5172 1.7598 -1.4804 24 1 12.6987 0.6676 -2.4699 25 1 13.2997 1.4535 -0.2559 26 1 11.0786 1.8779 -1.1317 27 7 8.2082 3.0854 -4.7232 28 7 6.9959 2.7712 -4.4291 29 6 5.3214 2.3799 -1.6138 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.2567 1.8014 1.9564 34 1 2.8829 1.0775 1.9564 35 1 2.6613 2.7670 1.4426 36 1 2.4805 3.5578 -0.0836 37 1 4.1309 4.0985 0.3182 38 1 3.1606 5.6522 -1.3099 39 1 2.7545 4.3041 -2.3999 40 1 5.5732 5.0797 -1.5213 41 1 4.8488 5.4511 -3.1039 42 1 7.6046 4.9357 -2.1752 43 1 10.3650 4.7785 -4.8451 44 1 9.9332 5.6239 -3.3393 45 1 10.6201 2.9600 -2.6994 46 1 14.9832 3.1731 -1.5674 47 1 5.5178 1.3747 -1.9869 48 1 6.1119 2.6742 -0.9234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185883403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:56 Heat of formation + Delta-G solvation = 50.548605 kcal Electronic energy + Delta-G solvation = -29569.470926 eV Core-core repulsion = 25470.190417 eV Total energy + Delta-G solvation = -4099.280509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.17010 -41.01194 -38.77065 -37.63006 -35.46456 -34.68600 -32.91286 -32.33692 -31.87580 -30.32113 -30.10373 -27.40950 -26.59715 -26.20967 -24.76301 -23.93316 -22.60844 -22.22831 -20.90370 -20.73907 -19.78385 -18.18906 -17.89756 -17.41652 -17.03331 -16.41610 -16.26427 -15.84630 -15.36834 -15.16157 -15.04099 -14.67414 -14.54798 -14.40832 -14.01180 -13.82276 -13.78907 -13.58845 -13.15567 -13.00746 -12.99708 -12.68309 -12.40380 -12.32304 -12.08825 -11.83583 -11.78455 -11.67212 -11.52859 -11.38499 -11.06318 -10.84463 -10.56340 -10.50872 -10.16060 -10.08490 -9.93827 -9.56742 -9.29182 -8.98634 -8.87126 -7.21057 -5.73627 -3.09252 1.63567 1.92393 2.08122 2.46199 2.78335 3.25828 3.42875 3.48200 3.51526 3.75658 3.86635 4.02933 4.06963 4.19837 4.21495 4.36485 4.47039 4.54800 4.64112 4.66453 4.72365 4.78839 4.81577 4.90160 4.97648 4.99508 5.07366 5.10003 5.16688 5.17470 5.25683 5.36724 5.39632 5.48523 5.51138 5.58150 5.73069 5.75508 5.76913 6.27549 6.42846 6.57105 6.64269 6.70006 6.76040 7.64165 8.00752 8.45081 8.72478 9.23231 9.95966 10.15994 11.44414 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002550 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.803997 B =10975.698661 C =11833.527236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.073 3.927 4 H 0.088 0.912 5 C -0.180 4.180 6 C 0.517 3.483 7 O -0.507 6.507 8 N -0.609 5.609 9 C 0.094 3.906 10 C -0.130 4.130 11 C -0.132 4.132 12 C 0.137 3.863 13 H 0.115 0.885 14 N -0.295 5.295 15 C -0.043 4.043 16 C -0.010 4.010 17 C 0.238 3.762 18 N -0.750 5.750 19 C -0.243 4.243 20 H 0.093 0.907 21 C 0.007 3.993 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.280 1.280 27 N -0.253 5.253 28 N -0.091 5.091 29 C 0.104 3.896 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.189 0.811 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.363 0.637 46 H 0.260 0.740 47 H 0.107 0.893 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.484 3.825 7.610 36.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.012 3.988 4 H 0.106 0.894 5 C -0.238 4.238 6 C 0.304 3.696 7 O -0.380 6.380 8 N -0.346 5.346 9 C -0.029 4.029 10 C -0.169 4.169 11 C -0.170 4.170 12 C 0.034 3.966 13 H 0.133 0.867 14 N -0.089 5.089 15 C -0.193 4.193 16 C -0.148 4.148 17 C 0.109 3.891 18 N -0.396 5.396 19 C -0.373 4.373 20 H 0.111 0.889 21 C -0.189 4.189 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.206 1.206 27 N -0.120 5.120 28 N -0.070 5.070 29 C -0.020 4.020 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.206 0.794 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.195 0.805 46 H 0.070 0.930 47 H 0.125 0.875 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -35.318 2.108 6.327 35.942 hybrid contribution -0.350 -0.122 1.462 1.508 sum -35.668 1.986 7.789 36.562 Atomic orbital electron populations 1.22914 0.80302 1.03556 1.00062 1.88080 1.19889 1.24803 1.94906 1.21881 0.93056 0.87120 0.96789 0.89447 1.22439 1.03866 1.02629 0.94839 1.20485 0.86192 0.83485 0.79478 1.90779 1.68735 1.29219 1.49255 1.47908 1.20970 1.07040 1.58680 1.22128 1.00570 0.83061 0.97100 1.21925 0.96477 1.00597 0.97917 1.21957 0.98094 0.94707 1.02288 1.21860 0.80707 0.98127 0.95933 0.86719 1.47272 1.12080 1.27772 1.21797 1.23357 0.88648 1.02625 1.04687 1.22538 0.98679 0.99082 0.94527 1.18911 0.81025 0.92185 0.96954 1.42659 1.08163 1.23480 1.65275 1.19033 0.83754 1.05584 1.28897 0.88886 1.24626 0.95420 0.98289 1.00555 1.69694 1.03337 1.38673 1.46380 0.86563 0.77705 0.85327 0.78994 1.20920 1.21719 1.20602 1.75128 1.01783 1.12547 1.22576 1.78335 1.08638 1.17105 1.02888 1.21872 0.85199 1.01812 0.93102 0.93741 0.88913 0.93683 0.90886 0.90754 0.90219 0.88664 0.90062 0.88911 0.90658 0.89766 0.89694 0.79426 0.93458 0.93646 0.80481 0.93037 0.87475 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.38 9.89 -55.09 -0.54 -3.93 16 3 C 0.07 0.50 2.30 -27.89 -0.06 0.44 16 4 H 0.09 0.33 7.08 -51.93 -0.37 -0.03 16 5 C -0.18 -0.83 9.10 37.16 0.34 -0.49 16 6 C 0.52 5.29 7.12 -10.99 -0.08 5.21 16 7 O -0.51 -7.90 15.92 -14.31 -0.23 -8.13 16 8 N -0.61 -4.62 2.97 -172.80 -0.51 -5.14 16 9 C 0.09 0.31 4.97 -3.71 -0.02 0.29 16 10 C -0.13 -0.35 6.08 -26.61 -0.16 -0.52 16 11 C -0.13 -0.69 4.78 -26.68 -0.13 -0.82 16 12 C 0.14 1.23 3.27 -67.83 -0.22 1.01 16 13 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 14 N -0.30 -3.93 3.26 -54.66 -0.18 -4.11 16 15 C -0.04 -0.59 10.62 -17.05 -0.18 -0.78 16 16 C -0.01 -0.19 6.61 -82.78 -0.55 -0.74 16 17 C 0.24 4.80 6.82 -5.19 -0.04 4.76 16 18 N -0.75 -18.62 5.40 -61.08 -0.33 -18.95 16 19 C -0.24 -7.00 10.47 -15.06 -0.16 -7.15 16 20 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 21 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 22 N -0.93 -29.68 13.97 55.49 0.78 -28.90 16 23 Si 0.88 23.17 27.74 -169.99 -4.71 18.45 16 24 H -0.28 -7.51 7.11 56.52 0.40 -7.10 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.28 -7.01 6.52 56.52 0.37 -6.64 16 27 N -0.25 -5.01 12.41 33.29 0.41 -4.60 16 28 N -0.09 -1.59 13.17 60.35 0.79 -0.79 16 29 C 0.10 1.02 6.04 -3.74 -0.02 1.00 16 30 H 0.04 0.17 8.09 -51.93 -0.42 -0.25 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.14 7.87 -51.93 -0.41 -0.27 16 33 H 0.07 0.22 7.87 -51.92 -0.41 -0.19 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.21 5.41 -51.93 -0.28 -0.07 16 36 H 0.10 0.12 4.66 -51.93 -0.24 -0.12 16 37 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.40 7.24 -51.93 -0.38 0.03 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.19 1.92 7.34 -52.49 -0.39 1.53 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.36 9.15 5.52 -40.82 -0.23 8.93 16 46 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 47 H 0.11 1.41 7.01 -51.93 -0.36 1.04 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -39.57 385.83 -6.29 -45.86 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.30 Total: 0.85 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -0.28 Total: 3.56 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.96 Total: -62.49 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.77 Total: -12.06 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.71 Total: 18.45 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.57 -6.29 -45.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185883403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.410 kcal (2) G-P(sol) polarization free energy of solvation -39.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds