Wall clock time and date at job start Tue Mar 31 2020 20:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99662 * 2 1 4 4 H 1.09001 * 109.47152 * 330.00526 * 3 2 1 5 5 C 1.52998 * 109.46863 * 90.00138 * 3 2 1 6 6 C 1.50698 * 109.47263 * 209.99848 * 3 2 1 7 7 O 1.21285 * 119.99620 * 355.00483 * 6 3 2 8 8 N 1.34778 * 120.00102 * 175.00221 * 6 3 2 9 9 C 1.46927 * 120.62805 * 359.97438 * 8 6 3 10 10 C 1.53193 * 108.77663 * 233.63128 * 9 8 6 11 11 C 1.53046 * 109.31028 * 305.36644 * 10 9 8 12 12 C 1.53046 * 109.53579 * 61.36644 * 11 10 9 13 13 H 1.09004 * 109.49895 * 58.58445 * 12 11 10 14 14 N 1.46497 * 109.49298 * 178.68227 * 12 11 10 15 15 C 1.35314 * 125.87351 * 34.99925 * 14 12 11 16 16 C 1.35349 * 106.17582 * 179.97438 * 15 14 12 17 17 C 1.50699 * 126.74803 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.46783 * 95.00601 * 17 16 15 19 19 C 1.36937 * 120.00083 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99766 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00386 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00633 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99674 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47482 * 89.99877 * 23 21 19 25 25 H 1.48502 * 109.47057 * 210.00007 * 23 21 19 26 26 H 1.48497 * 109.47146 * 329.99700 * 23 21 19 27 27 N 1.33771 * 106.50093 * 0.02562 * 16 15 14 28 28 N 1.28635 * 108.88135 * 359.73178 * 27 16 15 29 29 C 1.46919 * 120.63015 * 180.02562 * 8 6 3 30 30 H 1.09003 * 109.47270 * 60.00022 * 1 2 3 31 31 H 1.09003 * 109.46709 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47003 * 299.99381 * 1 2 3 33 33 H 1.09008 * 109.47328 * 299.99971 * 5 3 2 34 34 H 1.09001 * 109.47704 * 59.99757 * 5 3 2 35 35 H 1.08999 * 109.47486 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.58699 * 353.41886 * 9 8 6 37 37 H 1.08998 * 109.58257 * 113.84839 * 9 8 6 38 38 H 1.09001 * 109.49998 * 185.42005 * 10 9 8 39 39 H 1.08998 * 109.50010 * 65.31705 * 10 9 8 40 40 H 1.08993 * 109.46296 * 301.34732 * 11 10 9 41 41 H 1.09000 * 109.45696 * 181.38288 * 11 10 9 42 42 H 1.08002 * 126.90920 * 0.02562 * 15 14 12 43 43 H 1.09003 * 109.47278 * 215.00329 * 17 16 15 44 44 H 1.09000 * 109.47522 * 335.00365 * 17 16 15 45 45 H 0.96995 * 120.00437 * 0.02562 * 18 17 16 46 46 H 0.96999 * 120.00567 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.59216 * 6.57787 * 29 8 6 48 48 H 1.09004 * 109.70105 * 246.22477 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2641 -0.7104 7 8 3.7897 0.2047 -1.0914 8 7 4.0254 2.4042 -0.9223 9 6 3.4916 3.6952 -0.4671 10 6 3.4635 4.6633 -1.6540 11 6 4.8603 4.7441 -2.2744 12 6 5.2731 3.3626 -2.7874 13 1 4.5470 3.0156 -3.5226 14 7 6.5969 3.4475 -3.4091 15 6 7.6123 4.2463 -3.0065 16 6 8.6396 4.0065 -3.8544 17 6 10.0017 4.6506 -3.8254 18 7 10.9298 3.7967 -3.0799 19 6 12.2350 4.1793 -2.9210 20 1 12.5801 5.1108 -3.3449 21 6 13.1143 3.3705 -2.2142 22 7 14.3687 3.7385 -2.0610 23 14 12.5172 1.7598 -1.4804 24 1 12.6987 0.6676 -2.4699 25 1 13.2997 1.4535 -0.2559 26 1 11.0786 1.8779 -1.1317 27 7 8.2082 3.0854 -4.7232 28 7 6.9959 2.7712 -4.4291 29 6 5.3214 2.3799 -1.6138 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.2567 1.8014 1.9564 34 1 2.8829 1.0775 1.9564 35 1 2.6613 2.7670 1.4426 36 1 2.4805 3.5578 -0.0836 37 1 4.1309 4.0985 0.3182 38 1 3.1606 5.6522 -1.3099 39 1 2.7545 4.3041 -2.3999 40 1 5.5732 5.0797 -1.5213 41 1 4.8488 5.4511 -3.1039 42 1 7.6046 4.9357 -2.1752 43 1 10.3650 4.7785 -4.8451 44 1 9.9332 5.6239 -3.3393 45 1 10.6201 2.9600 -2.6994 46 1 14.9832 3.1731 -1.5674 47 1 5.5178 1.3747 -1.9869 48 1 6.1119 2.6742 -0.9234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185883403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:55 Heat of formation + Delta-G solvation = 20.015349 kcal Electronic energy + Delta-G solvation = -29570.794948 eV Core-core repulsion = 25470.190417 eV Total energy + Delta-G solvation = -4100.604531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.38209 -41.66658 -39.35327 -38.33562 -37.04469 -35.85868 -34.00688 -33.37932 -32.84873 -31.98922 -30.86687 -27.97903 -27.78707 -27.07693 -25.52003 -24.51249 -24.33242 -23.18777 -22.17484 -21.64081 -20.36257 -19.91095 -18.75825 -18.27099 -17.87107 -17.39684 -16.94587 -16.61232 -16.37988 -16.16096 -16.03473 -15.69714 -15.54961 -15.47301 -15.13116 -14.86294 -14.45122 -14.29670 -14.24422 -14.18821 -13.87372 -13.55238 -13.51176 -13.30219 -12.95015 -12.82856 -12.72295 -12.64178 -12.36348 -12.23005 -12.15142 -12.00227 -11.85124 -11.83230 -11.77217 -11.24651 -11.06172 -11.03421 -10.60268 -10.31092 -9.91115 -9.32861 -8.03826 -5.36574 0.51429 1.09329 1.32209 1.37447 1.38241 1.39011 1.44140 1.72628 2.45300 2.83476 3.10674 3.25814 3.27348 3.40422 3.48108 3.66485 3.77675 3.81280 3.86969 3.92352 3.94006 3.97724 4.14637 4.19288 4.39541 4.42170 4.47105 4.52172 4.53374 4.57506 4.64447 4.73768 4.79022 4.83702 4.85113 4.91095 4.95811 5.08793 5.13781 5.19987 5.21997 5.27262 5.61655 5.74758 5.96541 6.20049 6.22747 6.95293 7.04328 7.45003 7.79680 7.98869 9.17259 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002550 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.803997 B =10975.698661 C =11833.527236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.403 6.403 3 C 0.075 3.925 4 H 0.125 0.875 5 C -0.175 4.175 6 C 0.506 3.494 7 O -0.578 6.578 8 N -0.599 5.599 9 C 0.083 3.917 10 C -0.122 4.122 11 C -0.127 4.127 12 C 0.135 3.865 13 H 0.110 0.890 14 N -0.280 5.280 15 C -0.010 4.010 16 C -0.042 4.042 17 C 0.240 3.760 18 N -0.754 5.754 19 C -0.227 4.227 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.978 5.978 23 Si 0.946 3.054 24 H -0.290 1.290 25 H -0.288 1.288 26 H -0.261 1.261 27 N -0.296 5.296 28 N -0.118 5.118 29 C 0.107 3.893 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.234 0.766 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.361 0.639 46 H 0.258 0.742 47 H 0.062 0.938 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.340 6.185 9.799 41.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.322 6.322 3 C 0.014 3.986 4 H 0.143 0.857 5 C -0.232 4.232 6 C 0.295 3.705 7 O -0.456 6.456 8 N -0.334 5.334 9 C -0.037 4.037 10 C -0.160 4.160 11 C -0.166 4.166 12 C 0.033 3.967 13 H 0.128 0.872 14 N -0.074 5.074 15 C -0.161 4.161 16 C -0.181 4.181 17 C 0.112 3.888 18 N -0.399 5.399 19 C -0.358 4.358 20 H 0.089 0.911 21 C -0.248 4.248 22 N -0.629 5.629 23 Si 0.774 3.226 24 H -0.217 1.217 25 H -0.215 1.215 26 H -0.186 1.186 27 N -0.163 5.163 28 N -0.096 5.096 29 C -0.018 4.018 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.145 0.855 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.250 0.750 43 H 0.052 0.948 44 H 0.091 0.909 45 H 0.193 0.807 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -39.268 4.520 8.508 40.432 hybrid contribution 0.735 -0.769 0.738 1.295 sum -38.533 3.751 9.246 39.804 Atomic orbital electron populations 1.23103 0.78356 1.04132 1.01761 1.88032 1.22196 1.26736 1.95200 1.22087 0.91389 0.87093 0.98049 0.85716 1.22455 1.04716 1.03066 0.92959 1.21373 0.87336 0.83031 0.78726 1.90743 1.70590 1.31927 1.52376 1.48015 1.19695 1.08317 1.57359 1.22597 1.02357 0.80744 0.97996 1.21959 0.94593 1.02112 0.97380 1.22067 1.00101 0.91509 1.02910 1.22263 0.78448 1.00790 0.95226 0.87161 1.47636 1.13282 1.26067 1.20430 1.23840 0.87006 1.01478 1.03819 1.22320 0.98875 1.00467 0.96421 1.18942 0.81415 0.92667 0.95749 1.42714 1.07486 1.24057 1.65691 1.19060 0.85424 1.04319 1.27009 0.91117 1.25323 0.95635 1.01794 1.02033 1.69838 1.04668 1.40240 1.48111 0.85554 0.78187 0.80910 0.77908 1.21699 1.21468 1.18614 1.75060 1.03049 1.13884 1.24304 1.78255 1.08146 1.18356 1.04866 1.21640 0.86849 0.99644 0.93646 0.92516 0.89148 0.91341 0.88687 0.93405 0.87652 0.85878 0.88111 0.85460 0.90582 0.88269 0.89196 0.75001 0.94796 0.90908 0.80690 0.93247 0.91904 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.41 16 2 O -0.40 -7.30 9.89 -129.99 -1.29 -8.59 16 3 C 0.07 0.85 2.30 29.85 0.07 0.92 16 4 H 0.13 0.42 7.08 -2.39 -0.02 0.41 16 5 C -0.17 -1.04 9.10 71.98 0.66 -0.39 16 6 C 0.51 10.11 7.12 87.66 0.62 10.73 16 7 O -0.58 -19.19 15.92 15.94 0.25 -18.93 16 8 N -0.60 -7.86 2.97 -819.00 -2.43 -10.30 16 9 C 0.08 0.13 4.97 86.36 0.43 0.56 16 10 C -0.12 0.00 6.08 30.67 0.19 0.19 16 11 C -0.13 -0.76 4.78 30.63 0.15 -0.61 16 12 C 0.13 2.14 3.27 45.06 0.15 2.29 16 13 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 14 N -0.28 -7.04 3.26 -326.86 -1.06 -8.10 16 15 C -0.01 -0.24 10.62 83.49 0.89 0.65 16 16 C -0.04 -1.48 6.61 41.60 0.28 -1.20 16 17 C 0.24 9.46 6.82 85.63 0.58 10.04 16 18 N -0.75 -36.98 5.40 -347.17 -1.87 -38.86 16 19 C -0.23 -13.16 10.47 84.03 0.88 -12.28 16 20 H 0.07 4.34 8.06 -2.91 -0.02 4.32 16 21 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 22 N -0.98 -63.31 13.97 21.65 0.30 -63.01 16 23 Si 0.95 48.21 27.74 68.60 1.90 50.11 16 24 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 25 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 26 H -0.26 -12.33 6.52 99.48 0.65 -11.68 16 27 N -0.30 -11.84 12.41 -48.60 -0.60 -12.44 16 28 N -0.12 -4.12 13.17 37.02 0.49 -3.63 16 29 C 0.11 2.02 6.04 86.35 0.52 2.54 16 30 H 0.06 0.31 8.09 -2.39 -0.02 0.29 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.22 7.87 -2.39 -0.02 0.20 16 33 H 0.09 0.18 7.87 -2.38 -0.02 0.16 16 34 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.11 0.04 5.41 -2.39 -0.01 0.02 16 36 H 0.12 -0.44 4.66 -2.39 -0.01 -0.45 16 37 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.13 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.10 0.36 7.24 -2.39 -0.02 0.34 16 41 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.23 3.51 7.34 -2.91 -0.02 3.49 16 43 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.36 17.84 5.52 -92.71 -0.51 17.33 16 46 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 47 H 0.06 1.77 7.01 -2.39 -0.02 1.75 16 48 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -93.48 385.83 3.19 -90.29 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.41 Total: 11.52 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 7.10 Total: 11.94 kcal Atomic # 7 Polarization: -131.15 SS G_CDS: -5.19 Total: -136.34 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.03 Total: -27.52 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.90 Total: 50.11 kcal Total: -93.48 3.19 -90.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185883403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.309 kcal (2) G-P(sol) polarization free energy of solvation -93.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds