Wall clock time and date at job start Tue Mar 31 2020 20:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00167 * 2 1 4 4 H 1.08998 * 109.47468 * 29.99712 * 3 2 1 5 5 C 1.53003 * 109.47343 * 269.99970 * 3 2 1 6 6 C 1.50701 * 109.47150 * 150.00185 * 3 2 1 7 7 O 1.21280 * 120.00234 * 5.00133 * 6 3 2 8 8 N 1.34779 * 119.99982 * 184.99881 * 6 3 2 9 9 C 1.46929 * 120.62811 * 0.02562 * 8 6 3 10 10 C 1.53196 * 108.77486 * 126.39016 * 9 8 6 11 11 C 1.53037 * 109.31315 * 54.63188 * 10 9 8 12 12 C 1.53043 * 109.53875 * 298.63222 * 11 10 9 13 13 H 1.08990 * 109.49664 * 301.41726 * 12 11 10 14 14 N 1.46496 * 109.49750 * 181.34704 * 12 11 10 15 15 C 1.35312 * 125.86988 * 324.71945 * 14 12 11 16 16 C 1.35355 * 106.17722 * 179.90172 * 15 14 12 17 17 C 1.50697 * 126.75485 * 180.12423 * 16 15 14 18 18 N 1.46499 * 109.47019 * 95.24696 * 17 16 15 19 19 C 1.36934 * 120.00038 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99753 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00262 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99784 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47460 * 60.00234 * 23 21 19 25 25 H 1.48506 * 109.46926 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47057 * 299.99495 * 23 21 19 27 27 N 1.33776 * 106.49215 * 0.35150 * 16 15 14 28 28 N 1.28631 * 108.88712 * 359.77538 * 27 16 15 29 29 C 1.46918 * 120.63268 * 179.97438 * 8 6 3 30 30 H 1.08999 * 109.46980 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46850 * 300.00421 * 1 2 3 32 32 H 1.09002 * 109.47073 * 59.99953 * 1 2 3 33 33 H 1.09005 * 109.47287 * 59.99846 * 5 3 2 34 34 H 1.08998 * 109.47323 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.47256 * 300.00620 * 5 3 2 36 36 H 1.08998 * 109.59209 * 6.59831 * 9 8 6 37 37 H 1.09003 * 109.58217 * 246.17112 * 9 8 6 38 38 H 1.08998 * 109.49640 * 174.58442 * 10 9 8 39 39 H 1.08994 * 109.49723 * 294.64754 * 10 9 8 40 40 H 1.09004 * 109.46115 * 58.65830 * 11 10 9 41 41 H 1.08996 * 109.46349 * 178.61401 * 11 10 9 42 42 H 1.07999 * 126.91249 * 0.02562 * 15 14 12 43 43 H 1.08999 * 109.47326 * 215.24585 * 17 16 15 44 44 H 1.09003 * 109.46891 * 335.24810 * 17 16 15 45 45 H 0.96996 * 119.99999 * 0.02562 * 18 17 16 46 46 H 0.97004 * 120.00132 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.58859 * 113.81891 * 29 8 6 48 48 H 1.09000 * 109.70348 * 353.47286 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7898 0.2044 1.0913 8 7 4.0255 2.4039 0.9223 9 6 3.4918 3.6950 0.4672 10 6 3.4644 4.6632 1.6540 11 6 4.8612 4.7438 2.2739 12 6 5.2740 3.3623 2.7871 13 1 4.5481 3.0156 3.5224 14 7 6.5977 3.4471 3.4090 15 6 7.6149 4.2419 3.0032 16 6 8.6405 4.0059 3.8544 17 6 10.0026 4.6500 3.8258 18 7 10.0224 5.7913 4.7441 19 6 11.1630 6.5354 4.8870 20 1 12.0479 6.2811 4.3223 21 6 11.1820 7.6164 5.7575 22 7 10.1038 7.9260 6.4459 23 14 12.7378 8.6319 5.9519 24 1 13.1118 9.2205 4.6408 25 1 12.4987 9.7210 6.9327 26 1 13.8394 7.7619 6.4363 27 7 8.2089 3.0845 4.7229 28 7 6.9949 2.7744 4.4319 29 6 5.3216 2.3795 1.6138 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.2569 1.8015 -1.9564 34 1 2.6607 2.7673 -1.4425 35 1 2.8829 1.0774 -1.9564 36 1 2.4807 3.5578 0.0840 37 1 4.1310 4.0980 -0.3184 38 1 3.1614 5.6520 1.3099 39 1 2.7551 4.3044 2.3998 40 1 5.5740 5.0793 1.5206 41 1 4.8502 5.4508 3.1034 42 1 7.6088 4.9283 2.1694 43 1 10.7547 3.9234 4.1330 44 1 10.2209 4.9935 2.8146 45 1 9.2278 6.0194 5.2514 46 1 10.1169 8.6816 7.0540 47 1 6.1105 2.6748 0.9220 48 1 5.5202 1.3748 1.9870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185883404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:59 Heat of formation + Delta-G solvation = 46.468886 kcal Electronic energy + Delta-G solvation = -29310.578532 eV Core-core repulsion = 25211.121112 eV Total energy + Delta-G solvation = -4099.457419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.02507 -40.98003 -38.72661 -37.59740 -35.31769 -34.53689 -32.83412 -32.30693 -31.79685 -30.06621 -29.84378 -27.39512 -26.52180 -25.87722 -24.67167 -23.89141 -22.85544 -22.26207 -20.81219 -20.63563 -19.72292 -18.12013 -17.59374 -17.21288 -16.94806 -16.29446 -16.23107 -15.82105 -15.26939 -15.10873 -14.94988 -14.73027 -14.47546 -14.37690 -13.80118 -13.74470 -13.65410 -13.53802 -13.11407 -13.09790 -12.97065 -12.62141 -12.38792 -12.28916 -11.86542 -11.75934 -11.72169 -11.55984 -11.37143 -11.15771 -10.88517 -10.78027 -10.52885 -10.41105 -10.12322 -10.02493 -9.89927 -9.71458 -9.24306 -8.86479 -8.80477 -6.89964 -5.72288 -3.01790 1.77276 1.98152 2.10017 2.56146 2.94299 3.27817 3.47259 3.51590 3.52882 3.81440 3.94123 4.09500 4.16807 4.24692 4.27446 4.38373 4.54853 4.62527 4.66676 4.73793 4.74978 4.83438 4.88481 4.91869 5.02491 5.06995 5.10626 5.17816 5.18971 5.30857 5.35254 5.47825 5.49709 5.52974 5.59586 5.65391 5.77116 5.89382 6.19703 6.42813 6.44517 6.68045 6.76023 6.79429 6.82614 7.65540 7.72243 8.45007 8.87343 9.56697 10.12692 10.48811 11.50406 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.002007 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.043145 B =13949.500693 C =14333.595109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.072 3.928 4 H 0.088 0.912 5 C -0.180 4.180 6 C 0.518 3.482 7 O -0.509 6.509 8 N -0.609 5.609 9 C 0.095 3.905 10 C -0.131 4.131 11 C -0.133 4.133 12 C 0.138 3.862 13 H 0.114 0.886 14 N -0.295 5.295 15 C -0.044 4.044 16 C -0.004 4.004 17 C 0.232 3.768 18 N -0.725 5.725 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.285 1.285 27 N -0.252 5.252 28 N -0.093 5.093 29 C 0.107 3.893 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.187 0.813 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.081 0.919 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.382 -8.531 -19.908 32.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.011 3.989 4 H 0.106 0.894 5 C -0.237 4.237 6 C 0.304 3.696 7 O -0.382 6.382 8 N -0.346 5.346 9 C -0.028 4.028 10 C -0.170 4.170 11 C -0.172 4.172 12 C 0.034 3.966 13 H 0.132 0.868 14 N -0.089 5.089 15 C -0.194 4.194 16 C -0.141 4.141 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.741 3.259 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.212 1.212 27 N -0.120 5.120 28 N -0.071 5.071 29 C -0.017 4.017 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.204 0.796 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.099 0.901 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.264 -10.321 -18.654 32.299 hybrid contribution 0.459 1.859 -0.459 1.969 sum -23.805 -8.461 -19.113 31.680 Atomic orbital electron populations 1.22913 0.80293 1.03534 1.00106 1.88067 1.19900 1.24834 1.94912 1.21888 0.93132 0.87124 0.96787 0.89407 1.22436 1.03847 1.02598 0.94848 1.20466 0.86156 0.83486 0.79448 1.90766 1.68781 1.29262 1.49403 1.47920 1.21021 1.07039 1.58576 1.22131 1.00478 0.83026 0.97147 1.21926 0.96629 1.00569 0.97839 1.21963 0.97895 0.94848 1.02463 1.21824 0.80905 0.98045 0.95834 0.86791 1.47225 1.11890 1.28346 1.21472 1.23299 0.88532 1.02148 1.05411 1.22475 0.99247 0.98449 0.93974 1.18948 0.86656 0.89343 0.94717 1.42294 1.14108 1.31033 1.49586 1.19192 0.90992 1.06812 1.20069 0.90937 1.24757 0.97455 0.99265 0.99476 1.69673 1.27504 1.30385 1.30537 0.86229 0.82683 0.79727 0.77291 1.21272 1.21761 1.21181 1.75115 1.01847 1.13228 1.21775 1.78320 1.08577 1.17514 1.02707 1.21845 0.85075 1.01725 0.93074 0.88927 0.93692 0.93700 0.90915 0.90200 0.90815 0.88730 0.90104 0.88898 0.90648 0.89837 0.89454 0.79625 0.94312 0.94496 0.78116 0.93498 0.90069 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.23 16 2 O -0.36 -3.30 9.89 -55.09 -0.54 -3.85 16 3 C 0.07 0.48 2.30 -27.88 -0.06 0.42 16 4 H 0.09 0.35 7.08 -51.93 -0.37 -0.02 16 5 C -0.18 -0.77 9.10 37.16 0.34 -0.43 16 6 C 0.52 5.13 7.12 -10.98 -0.08 5.05 16 7 O -0.51 -7.65 15.92 -14.30 -0.23 -7.87 16 8 N -0.61 -4.52 2.97 -172.81 -0.51 -5.03 16 9 C 0.09 0.34 4.97 -3.71 -0.02 0.32 16 10 C -0.13 -0.50 6.08 -26.61 -0.16 -0.66 16 11 C -0.13 -0.90 4.78 -26.69 -0.13 -1.03 16 12 C 0.14 1.34 3.27 -67.85 -0.22 1.12 16 13 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 14 N -0.30 -4.22 3.26 -54.68 -0.18 -4.39 16 15 C -0.04 -0.65 10.63 -17.05 -0.18 -0.83 16 16 C 0.00 -0.07 6.62 -82.77 -0.55 -0.62 16 17 C 0.23 4.94 6.82 -5.20 -0.04 4.90 16 18 N -0.73 -19.09 5.59 -61.09 -0.34 -19.43 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 23 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 N -0.25 -5.30 12.41 33.29 0.41 -4.89 16 28 N -0.09 -1.71 13.16 60.35 0.79 -0.92 16 29 C 0.11 1.00 6.03 -3.75 -0.02 0.98 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 32 H 0.04 0.14 7.87 -51.93 -0.41 -0.27 16 33 H 0.07 0.21 7.87 -51.93 -0.41 -0.20 16 34 H 0.08 0.19 5.41 -51.93 -0.28 -0.09 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.14 4.66 -51.93 -0.24 -0.10 16 37 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.50 7.25 -51.93 -0.38 0.12 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.19 2.11 7.35 -52.49 -0.39 1.72 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.39 10.93 7.66 -40.82 -0.31 10.62 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 48 H 0.11 1.31 7.01 -51.93 -0.36 0.95 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -38.58 388.97 -6.65 -45.23 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.34 Total: 2.77 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -0.27 Total: 3.02 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: 0.90 Total: -62.70 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.77 Total: -11.72 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.58 -6.65 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185883404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.695 kcal (2) G-P(sol) polarization free energy of solvation -38.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds