Wall clock time and date at job start Tue Mar 31 2020 20:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00167 * 2 1 4 4 H 1.08998 * 109.47468 * 29.99712 * 3 2 1 5 5 C 1.53003 * 109.47343 * 269.99970 * 3 2 1 6 6 C 1.50701 * 109.47150 * 150.00185 * 3 2 1 7 7 O 1.21280 * 120.00234 * 5.00133 * 6 3 2 8 8 N 1.34779 * 119.99982 * 184.99881 * 6 3 2 9 9 C 1.46929 * 120.62811 * 0.02562 * 8 6 3 10 10 C 1.53196 * 108.77486 * 126.39016 * 9 8 6 11 11 C 1.53037 * 109.31315 * 54.63188 * 10 9 8 12 12 C 1.53043 * 109.53875 * 298.63222 * 11 10 9 13 13 H 1.08990 * 109.49664 * 301.41726 * 12 11 10 14 14 N 1.46496 * 109.49750 * 181.34704 * 12 11 10 15 15 C 1.35312 * 125.86988 * 324.71945 * 14 12 11 16 16 C 1.35355 * 106.17722 * 179.90172 * 15 14 12 17 17 C 1.50697 * 126.75485 * 180.12423 * 16 15 14 18 18 N 1.46499 * 109.47019 * 95.24696 * 17 16 15 19 19 C 1.36934 * 120.00038 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99753 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00262 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99784 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47460 * 60.00234 * 23 21 19 25 25 H 1.48506 * 109.46926 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47057 * 299.99495 * 23 21 19 27 27 N 1.33776 * 106.49215 * 0.35150 * 16 15 14 28 28 N 1.28631 * 108.88712 * 359.77538 * 27 16 15 29 29 C 1.46918 * 120.63268 * 179.97438 * 8 6 3 30 30 H 1.08999 * 109.46980 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46850 * 300.00421 * 1 2 3 32 32 H 1.09002 * 109.47073 * 59.99953 * 1 2 3 33 33 H 1.09005 * 109.47287 * 59.99846 * 5 3 2 34 34 H 1.08998 * 109.47323 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.47256 * 300.00620 * 5 3 2 36 36 H 1.08998 * 109.59209 * 6.59831 * 9 8 6 37 37 H 1.09003 * 109.58217 * 246.17112 * 9 8 6 38 38 H 1.08998 * 109.49640 * 174.58442 * 10 9 8 39 39 H 1.08994 * 109.49723 * 294.64754 * 10 9 8 40 40 H 1.09004 * 109.46115 * 58.65830 * 11 10 9 41 41 H 1.08996 * 109.46349 * 178.61401 * 11 10 9 42 42 H 1.07999 * 126.91249 * 0.02562 * 15 14 12 43 43 H 1.08999 * 109.47326 * 215.24585 * 17 16 15 44 44 H 1.09003 * 109.46891 * 335.24810 * 17 16 15 45 45 H 0.96996 * 119.99999 * 0.02562 * 18 17 16 46 46 H 0.97004 * 120.00132 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.58859 * 113.81891 * 29 8 6 48 48 H 1.09000 * 109.70348 * 353.47286 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7898 0.2044 1.0913 8 7 4.0255 2.4039 0.9223 9 6 3.4918 3.6950 0.4672 10 6 3.4644 4.6632 1.6540 11 6 4.8612 4.7438 2.2739 12 6 5.2740 3.3623 2.7871 13 1 4.5481 3.0156 3.5224 14 7 6.5977 3.4471 3.4090 15 6 7.6149 4.2419 3.0032 16 6 8.6405 4.0059 3.8544 17 6 10.0026 4.6500 3.8258 18 7 10.0224 5.7913 4.7441 19 6 11.1630 6.5354 4.8870 20 1 12.0479 6.2811 4.3223 21 6 11.1820 7.6164 5.7575 22 7 10.1038 7.9260 6.4459 23 14 12.7378 8.6319 5.9519 24 1 13.1118 9.2205 4.6408 25 1 12.4987 9.7210 6.9327 26 1 13.8394 7.7619 6.4363 27 7 8.2089 3.0845 4.7229 28 7 6.9949 2.7744 4.4319 29 6 5.3216 2.3795 1.6138 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.2569 1.8015 -1.9564 34 1 2.6607 2.7673 -1.4425 35 1 2.8829 1.0774 -1.9564 36 1 2.4807 3.5578 0.0840 37 1 4.1310 4.0980 -0.3184 38 1 3.1614 5.6520 1.3099 39 1 2.7551 4.3044 2.3998 40 1 5.5740 5.0793 1.5206 41 1 4.8502 5.4508 3.1034 42 1 7.6088 4.9283 2.1694 43 1 10.7547 3.9234 4.1330 44 1 10.2209 4.9935 2.8146 45 1 9.2278 6.0194 5.2514 46 1 10.1169 8.6816 7.0540 47 1 6.1105 2.6748 0.9220 48 1 5.5202 1.3748 1.9870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185883404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:58 Heat of formation + Delta-G solvation = 17.278108 kcal Electronic energy + Delta-G solvation = -29311.844339 eV Core-core repulsion = 25211.121112 eV Total energy + Delta-G solvation = -4100.723226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.33693 -41.64430 -39.33562 -38.31166 -36.86156 -35.81380 -33.91289 -33.29448 -32.82505 -31.62391 -30.83290 -27.79307 -27.68026 -27.05182 -25.50304 -24.79839 -24.39640 -23.16540 -22.10292 -21.61703 -20.33003 -19.36108 -18.73074 -18.24431 -17.86249 -17.32779 -16.93560 -16.60509 -16.35210 -16.04846 -15.99337 -15.57571 -15.54037 -15.42757 -15.13340 -14.90275 -14.37965 -14.25063 -14.20686 -14.11112 -13.77412 -13.50074 -13.32976 -13.03086 -12.81114 -12.73438 -12.70949 -12.58065 -12.33793 -12.22087 -12.11682 -12.00192 -11.89976 -11.83120 -11.73415 -11.19366 -11.03992 -10.93484 -10.58005 -10.25505 -9.88712 -9.00943 -7.91894 -5.22392 0.56321 1.10123 1.40525 1.44719 1.51904 1.55054 1.60994 1.75535 2.60743 2.84969 3.12329 3.28054 3.39047 3.45015 3.51948 3.67530 3.80336 3.88215 3.94143 3.95226 3.99754 4.17116 4.21223 4.24895 4.39836 4.44040 4.47773 4.54106 4.54707 4.60158 4.67333 4.73240 4.81430 4.86461 4.86552 4.91423 4.96894 5.12169 5.16851 5.22161 5.23119 5.27246 5.52063 5.65309 5.98341 6.24311 6.27414 6.97342 7.34360 7.49188 8.05417 8.31846 9.31761 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.002007 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.043145 B =13949.500693 C =14333.595109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.073 3.927 4 H 0.122 0.878 5 C -0.174 4.174 6 C 0.508 3.492 7 O -0.576 6.576 8 N -0.599 5.599 9 C 0.087 3.913 10 C -0.123 4.123 11 C -0.130 4.130 12 C 0.133 3.867 13 H 0.105 0.895 14 N -0.279 5.279 15 C -0.012 4.012 16 C -0.037 4.037 17 C 0.236 3.764 18 N -0.738 5.738 19 C -0.245 4.245 20 H 0.084 0.916 21 C -0.078 4.078 22 N -0.972 5.972 23 Si 0.980 3.020 24 H -0.270 1.270 25 H -0.298 1.298 26 H -0.281 1.281 27 N -0.298 5.298 28 N -0.120 5.120 29 C 0.113 3.887 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.231 0.769 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.095 0.905 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.883 -6.232 -23.006 35.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.320 6.320 3 C 0.012 3.988 4 H 0.139 0.861 5 C -0.231 4.231 6 C 0.297 3.703 7 O -0.454 6.454 8 N -0.334 5.334 9 C -0.033 4.033 10 C -0.161 4.161 11 C -0.168 4.168 12 C 0.032 3.968 13 H 0.123 0.877 14 N -0.073 5.073 15 C -0.164 4.164 16 C -0.176 4.176 17 C 0.108 3.892 18 N -0.381 5.381 19 C -0.376 4.376 20 H 0.102 0.898 21 C -0.270 4.270 22 N -0.623 5.623 23 Si 0.808 3.192 24 H -0.196 1.196 25 H -0.224 1.224 26 H -0.207 1.207 27 N -0.165 5.165 28 N -0.098 5.098 29 C -0.012 4.012 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.141 0.859 37 H 0.123 0.877 38 H 0.142 0.858 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.247 0.753 43 H 0.044 0.956 44 H 0.084 0.916 45 H 0.202 0.798 46 H 0.059 0.941 47 H 0.113 0.887 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.792 -8.027 -21.799 34.711 hybrid contribution 0.824 1.071 0.437 1.420 sum -24.968 -6.956 -21.362 33.587 Atomic orbital electron populations 1.23098 0.78427 1.04137 1.01694 1.88020 1.22111 1.26693 1.95205 1.22097 0.91463 0.87058 0.98187 0.86064 1.22448 1.04734 1.03111 0.92819 1.21310 0.87215 0.83018 0.78717 1.90734 1.70522 1.31827 1.52354 1.48019 1.19876 1.08215 1.57310 1.22561 1.02488 0.80671 0.97617 1.21953 0.94322 1.02240 0.97634 1.22055 1.00376 0.91796 1.02597 1.22233 0.78450 1.00625 0.95542 0.87719 1.47593 1.13103 1.26601 1.20044 1.23765 0.86926 1.00961 1.04723 1.22356 0.99773 0.99694 0.95780 1.18976 0.87855 0.87613 0.94740 1.42493 1.13032 1.32214 1.50354 1.19667 0.91883 1.06597 1.19448 0.89771 1.25646 1.00675 1.00925 0.99721 1.69852 1.29768 1.31037 1.31652 0.85120 0.78769 0.77760 0.77524 1.19605 1.22410 1.20687 1.75038 1.03170 1.14758 1.23529 1.78225 1.08042 1.18890 1.04671 1.21615 0.86876 0.99429 0.93264 0.89059 0.92718 0.91341 0.88832 0.87669 0.93070 0.85865 0.87692 0.85814 0.90875 0.88043 0.90610 0.75274 0.95573 0.91586 0.79830 0.94089 0.88671 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.41 16 2 O -0.40 -7.13 9.89 -129.99 -1.29 -8.42 16 3 C 0.07 0.82 2.30 29.85 0.07 0.89 16 4 H 0.12 0.49 7.08 -2.39 -0.02 0.48 16 5 C -0.17 -0.93 9.10 71.98 0.66 -0.27 16 6 C 0.51 9.85 7.12 87.66 0.62 10.48 16 7 O -0.58 -18.43 15.92 15.96 0.25 -18.18 16 8 N -0.60 -7.78 2.97 -819.03 -2.44 -10.21 16 9 C 0.09 0.22 4.97 86.36 0.43 0.64 16 10 C -0.12 -0.39 6.08 30.67 0.19 -0.21 16 11 C -0.13 -1.34 4.78 30.62 0.15 -1.19 16 12 C 0.13 2.47 3.27 45.05 0.15 2.62 16 13 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 14 N -0.28 -7.88 3.26 -326.92 -1.06 -8.94 16 15 C -0.01 -0.34 10.63 83.49 0.89 0.55 16 16 C -0.04 -1.44 6.62 41.60 0.28 -1.17 16 17 C 0.24 9.98 6.82 85.63 0.58 10.57 16 18 N -0.74 -39.10 5.59 -347.18 -1.94 -41.04 16 19 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 21 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 22 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 23 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 27 N -0.30 -13.01 12.41 -48.60 -0.60 -13.61 16 28 N -0.12 -4.59 13.16 37.02 0.49 -4.10 16 29 C 0.11 2.05 6.03 86.34 0.52 2.57 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.33 8.08 -2.39 -0.02 0.31 16 32 H 0.07 0.22 7.87 -2.39 -0.02 0.21 16 33 H 0.09 0.14 7.87 -2.38 -0.02 0.12 16 34 H 0.10 -0.02 5.41 -2.39 -0.01 -0.03 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.12 -0.33 4.66 -2.39 -0.01 -0.34 16 37 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.10 0.72 7.25 -2.39 -0.02 0.70 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.23 4.25 7.35 -2.91 -0.02 4.23 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.37 21.48 7.66 -92.71 -0.71 20.77 16 46 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 47 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.07 1.80 7.01 -2.39 -0.02 1.78 16 Total: -1.00 -90.59 388.97 3.05 -87.54 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.27 Total: 19.31 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 7.06 Total: 9.86 kcal Atomic # 7 Polarization: -133.22 SS G_CDS: -5.28 Total: -138.50 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -1.03 Total: -26.59 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -90.59 3.05 -87.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185883404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.820 kcal (2) G-P(sol) polarization free energy of solvation -90.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds