Wall clock time and date at job start Tue Mar 31 2020 20:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47263 * 2 1 4 4 N 1.28718 * 126.03468 * 275.06267 * 3 2 1 5 5 N 1.28514 * 110.64040 * 179.97438 * 4 3 2 6 6 C 1.33326 * 109.43865 * 359.76584 * 5 4 3 7 7 C 1.50697 * 126.81433 * 180.25443 * 6 5 4 8 8 C 1.37006 * 106.36858 * 0.37051 * 6 5 4 9 9 C 1.47236 * 127.18636 * 179.90781 * 8 6 5 10 10 O 1.21621 * 119.99961 * 89.67186 * 9 8 6 11 11 N 1.34774 * 119.99996 * 269.66809 * 9 8 6 12 12 C 1.47504 * 118.75740 * 354.86881 * 11 9 8 13 13 C 1.53568 * 111.02895 * 221.62264 * 12 11 9 14 14 C 1.51540 * 109.58007 * 39.98065 * 13 12 11 15 15 O 1.42154 * 108.74717 * 268.59547 * 14 13 12 16 16 C 1.38017 * 119.43767 * 87.23946 * 15 14 13 17 17 H 1.08993 * 109.47502 * 56.56601 * 16 15 14 18 18 C 1.53001 * 109.46881 * 176.56072 * 16 15 14 19 19 N 1.46500 * 109.47443 * 300.00024 * 18 16 15 20 20 C 1.36930 * 120.00510 * 179.97438 * 19 18 16 21 21 H 1.08011 * 119.99565 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00321 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99610 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99787 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46935 * 90.00295 * 24 22 20 26 26 H 1.48506 * 109.46649 * 209.99781 * 24 22 20 27 27 H 1.48494 * 109.47276 * 329.99770 * 24 22 20 28 28 C 1.45128 * 118.75715 * 174.86323 * 11 9 8 29 29 H 1.09000 * 109.47517 * 295.00450 * 1 2 3 30 30 H 1.09002 * 109.46676 * 55.00458 * 1 2 3 31 31 H 1.08995 * 109.47390 * 175.00476 * 1 2 3 32 32 H 1.08998 * 109.47611 * 239.99582 * 2 1 3 33 33 H 1.09001 * 109.46797 * 119.99561 * 2 1 3 34 34 H 1.08998 * 109.47683 * 270.13240 * 7 6 5 35 35 H 1.09003 * 109.47052 * 30.13818 * 7 6 5 36 36 H 1.09004 * 109.47059 * 150.12923 * 7 6 5 37 37 H 1.09005 * 109.16761 * 101.22438 * 12 11 9 38 38 H 1.09005 * 109.17003 * 342.02532 * 12 11 9 39 39 H 1.08997 * 109.45957 * 279.94416 * 13 12 11 40 40 H 1.09003 * 109.45607 * 160.00912 * 13 12 11 41 41 H 1.08998 * 109.59165 * 28.37414 * 14 13 12 42 42 H 1.09003 * 109.59173 * 148.67019 * 14 13 12 43 43 H 1.09004 * 109.47031 * 59.99752 * 18 16 15 44 44 H 1.08997 * 109.47207 * 179.97438 * 18 16 15 45 45 H 0.96998 * 119.99501 * 359.97438 * 19 18 16 46 46 H 0.97001 * 119.99789 * 180.02562 * 23 22 20 47 47 H 1.09002 * 109.45723 * 330.69884 * 28 11 9 48 48 H 1.08999 * 109.45869 * 210.75003 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1841 2.1257 -1.0368 5 7 2.6251 3.2840 -0.6970 6 6 2.7619 3.3354 0.6283 7 6 3.2447 4.5086 1.4414 8 6 2.3788 2.1089 1.1038 9 6 2.3536 1.6672 2.5081 10 8 1.3540 1.8348 3.1804 11 7 3.4380 1.0770 3.0485 12 6 4.5932 0.7834 2.1795 13 6 5.1809 -0.6004 2.4928 14 6 4.0566 -1.5823 2.7542 15 8 3.7728 -1.5918 4.1470 16 6 2.8754 -0.6788 4.6627 17 1 1.9204 -0.7767 4.1465 18 6 2.6775 -0.9460 6.1562 19 7 2.1571 -2.3024 6.3449 20 6 1.9006 -2.7680 7.6069 21 1 2.0824 -2.1352 8.4632 22 6 1.4071 -4.0530 7.7856 23 7 1.1861 -4.8241 6.7421 24 14 1.0566 -4.6877 9.5072 25 1 -0.3448 -4.3653 9.8778 26 1 1.2515 -6.1596 9.5412 27 1 1.9844 -4.0431 10.4709 28 6 3.4252 0.7545 4.4634 29 1 -0.3634 0.4344 0.9313 30 1 -0.3633 0.5894 -0.8419 31 1 -0.3634 -1.0237 -0.0895 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 4.3281 4.4551 1.5488 35 1 2.9750 5.4363 0.9365 36 1 2.7802 4.4833 2.4272 37 1 5.3604 1.5418 2.3356 38 1 4.2731 0.8087 1.1378 39 1 5.8168 -0.5334 3.3755 40 1 5.7730 -0.9439 1.6446 41 1 3.1681 -1.2758 2.2022 42 1 4.3601 -2.5790 2.4340 43 1 3.6325 -0.8482 6.6724 44 1 1.9690 -0.2247 6.5636 45 1 1.9942 -2.8707 5.5759 46 1 0.8408 -5.7220 6.8670 47 1 2.7888 1.4643 4.9919 48 1 4.4394 0.8127 4.8583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200673027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:51 Heat of formation + Delta-G solvation = 41.717881 kcal Electronic energy + Delta-G solvation = -31082.838597 eV Core-core repulsion = 26983.175158 eV Total energy + Delta-G solvation = -4099.663438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.62359 -40.65931 -38.60908 -36.02261 -35.85981 -34.70026 -33.14738 -32.88378 -31.32380 -30.97226 -29.21114 -28.05145 -26.87086 -25.57255 -24.98078 -23.60244 -22.28500 -21.80328 -21.48007 -21.06139 -19.60718 -18.27344 -17.27871 -17.08161 -16.92375 -16.59965 -16.28038 -15.82288 -15.28756 -15.03037 -14.83633 -14.38689 -14.14076 -13.99333 -13.81458 -13.64307 -13.24826 -13.15954 -13.07041 -12.90177 -12.76726 -12.52318 -12.41693 -12.21308 -12.13558 -11.94012 -11.84895 -11.53522 -11.23717 -11.10783 -10.87546 -10.79954 -10.52524 -10.38469 -10.27730 -10.03441 -9.71743 -9.57292 -9.43466 -8.87092 -8.80282 -6.88965 -5.73284 -3.01524 0.96539 1.55073 2.10335 2.22185 2.59348 3.45495 3.50352 3.52097 3.74260 3.80155 3.97595 4.21798 4.38590 4.38903 4.51970 4.56080 4.60811 4.63738 4.78670 4.96383 5.07061 5.09406 5.15279 5.19994 5.25527 5.27745 5.29352 5.34419 5.41753 5.46251 5.57994 5.59673 5.67321 5.68601 5.79331 5.84497 5.86519 5.96101 6.08865 6.24322 6.27082 6.58222 6.70141 6.82502 7.64558 7.71264 7.86057 8.10705 8.45012 9.56848 10.14185 10.50150 11.49600 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.002959 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.681360 B = 9460.603775 C = 9738.206973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.267 5.267 4 N -0.063 5.063 5 N -0.268 5.268 6 C 0.024 3.976 7 C -0.072 4.072 8 C -0.057 4.057 9 C 0.586 3.414 10 O -0.503 6.503 11 N -0.593 5.593 12 C 0.107 3.893 13 C -0.167 4.167 14 C 0.074 3.926 15 O -0.364 6.364 16 C 0.089 3.911 17 H 0.052 0.948 18 C 0.166 3.834 19 N -0.725 5.725 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.080 3.920 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.093 0.907 43 H 0.028 0.972 44 H 0.036 0.964 45 H 0.387 0.613 46 H 0.254 0.746 47 H 0.097 0.903 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.582 13.906 -15.763 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.065 5.065 4 N -0.042 5.042 5 N -0.133 5.133 6 C -0.116 4.116 7 C -0.131 4.131 8 C -0.191 4.191 9 C 0.369 3.631 10 O -0.376 6.376 11 N -0.326 5.326 12 C -0.015 4.015 13 C -0.205 4.205 14 C -0.002 4.002 15 O -0.282 6.282 16 C 0.029 3.971 17 H 0.070 0.930 18 C 0.038 3.962 19 N -0.369 5.369 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.043 4.043 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.111 0.889 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.221 0.779 46 H 0.064 0.936 47 H 0.116 0.884 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.005 13.890 -16.624 22.767 hybrid contribution -0.318 -0.609 1.392 1.553 sum 6.687 13.281 -15.231 21.286 Atomic orbital electron populations 1.22179 0.92042 1.04567 1.04161 1.22333 0.97446 0.75732 1.05998 1.47888 1.41489 1.13430 1.03658 1.78178 1.16459 0.98010 1.11557 1.74834 1.15721 1.11003 1.11743 1.22124 1.03312 0.94930 0.91213 1.20170 1.01439 0.93419 0.98055 1.21809 1.12008 0.95009 0.90298 1.17016 0.83596 0.78250 0.84243 1.90909 1.31195 1.53961 1.61505 1.47895 1.15743 1.58575 1.10396 1.21985 0.88039 0.97984 0.93495 1.22529 0.99925 0.94116 1.03939 1.22139 0.95651 0.99318 0.83137 1.86475 1.62972 1.56779 1.21929 1.22291 0.91276 0.86394 0.97154 0.93023 1.20615 0.97093 0.89725 0.88764 1.42189 1.77726 1.10578 1.06443 1.19227 1.35729 0.96920 0.85051 0.91161 1.24730 1.02279 0.96807 0.97159 1.69673 1.51430 1.08964 1.28024 0.86185 0.78024 0.77946 0.84007 1.21762 1.21814 1.20755 1.22590 1.03676 0.98956 0.79110 0.90967 0.91006 0.89047 0.86761 0.87968 0.90128 0.89752 0.90437 0.90745 0.90932 0.89344 0.89455 0.94277 0.88888 0.95449 0.94678 0.77899 0.93609 0.88430 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.11 0.88 6.99 -4.05 -0.03 0.85 16 3 N -0.27 -2.95 3.26 -57.38 -0.19 -3.14 16 4 N -0.06 -0.79 13.14 60.35 0.79 0.00 16 5 N -0.27 -3.50 12.35 33.51 0.41 -3.08 16 6 C 0.02 0.28 7.30 -82.39 -0.60 -0.32 16 7 C -0.07 -0.61 10.28 36.00 0.37 -0.24 16 8 C -0.06 -0.68 4.64 -82.33 -0.38 -1.06 16 9 C 0.59 7.57 6.64 -12.61 -0.08 7.49 16 10 O -0.50 -8.31 16.59 5.26 0.09 -8.22 16 11 N -0.59 -6.62 2.19 -173.81 -0.38 -7.00 16 12 C 0.11 0.92 5.98 -3.20 -0.02 0.90 16 13 C -0.17 -1.43 5.78 -27.17 -0.16 -1.59 16 14 C 0.07 0.86 6.38 36.42 0.23 1.09 16 15 O -0.36 -5.92 9.18 -26.54 -0.24 -6.16 16 16 C 0.09 1.45 2.73 -25.78 -0.07 1.38 16 17 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 18 C 0.17 3.34 5.95 -4.04 -0.02 3.32 16 19 N -0.72 -18.68 5.49 -59.91 -0.33 -19.01 16 20 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 24 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 28 C 0.08 1.01 4.82 -3.83 -0.02 0.99 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.86 6.18 -51.93 -0.32 0.54 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.66 8.02 -51.93 -0.42 0.25 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.62 6.32 -51.93 -0.33 0.29 16 39 H 0.09 0.82 8.01 -51.93 -0.42 0.41 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.04 0.43 5.82 -51.93 -0.30 0.13 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.39 10.61 7.53 -40.82 -0.31 10.30 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.10 1.29 7.35 -51.93 -0.38 0.91 16 48 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -35.07 390.55 -6.42 -41.49 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.51 Total: 5.04 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.65 Total: 4.38 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 1.04 Total: -59.90 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.16 Total: -14.38 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.07 -6.42 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200673027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.208 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds