Wall clock time and date at job start Tue Mar 31 2020 20:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47263 * 2 1 4 4 N 1.28718 * 126.03468 * 275.06267 * 3 2 1 5 5 N 1.28514 * 110.64040 * 179.97438 * 4 3 2 6 6 C 1.33326 * 109.43865 * 359.76584 * 5 4 3 7 7 C 1.50697 * 126.81433 * 180.25443 * 6 5 4 8 8 C 1.37006 * 106.36858 * 0.37051 * 6 5 4 9 9 C 1.47236 * 127.18636 * 179.90781 * 8 6 5 10 10 O 1.21621 * 119.99961 * 89.67186 * 9 8 6 11 11 N 1.34774 * 119.99996 * 269.66809 * 9 8 6 12 12 C 1.47504 * 118.75740 * 354.86881 * 11 9 8 13 13 C 1.53568 * 111.02895 * 221.62264 * 12 11 9 14 14 C 1.51540 * 109.58007 * 39.98065 * 13 12 11 15 15 O 1.42154 * 108.74717 * 268.59547 * 14 13 12 16 16 C 1.38017 * 119.43767 * 87.23946 * 15 14 13 17 17 H 1.08993 * 109.47502 * 56.56601 * 16 15 14 18 18 C 1.53001 * 109.46881 * 176.56072 * 16 15 14 19 19 N 1.46500 * 109.47443 * 300.00024 * 18 16 15 20 20 C 1.36930 * 120.00510 * 179.97438 * 19 18 16 21 21 H 1.08011 * 119.99565 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00321 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99610 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99787 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46935 * 90.00295 * 24 22 20 26 26 H 1.48506 * 109.46649 * 209.99781 * 24 22 20 27 27 H 1.48494 * 109.47276 * 329.99770 * 24 22 20 28 28 C 1.45128 * 118.75715 * 174.86323 * 11 9 8 29 29 H 1.09000 * 109.47517 * 295.00450 * 1 2 3 30 30 H 1.09002 * 109.46676 * 55.00458 * 1 2 3 31 31 H 1.08995 * 109.47390 * 175.00476 * 1 2 3 32 32 H 1.08998 * 109.47611 * 239.99582 * 2 1 3 33 33 H 1.09001 * 109.46797 * 119.99561 * 2 1 3 34 34 H 1.08998 * 109.47683 * 270.13240 * 7 6 5 35 35 H 1.09003 * 109.47052 * 30.13818 * 7 6 5 36 36 H 1.09004 * 109.47059 * 150.12923 * 7 6 5 37 37 H 1.09005 * 109.16761 * 101.22438 * 12 11 9 38 38 H 1.09005 * 109.17003 * 342.02532 * 12 11 9 39 39 H 1.08997 * 109.45957 * 279.94416 * 13 12 11 40 40 H 1.09003 * 109.45607 * 160.00912 * 13 12 11 41 41 H 1.08998 * 109.59165 * 28.37414 * 14 13 12 42 42 H 1.09003 * 109.59173 * 148.67019 * 14 13 12 43 43 H 1.09004 * 109.47031 * 59.99752 * 18 16 15 44 44 H 1.08997 * 109.47207 * 179.97438 * 18 16 15 45 45 H 0.96998 * 119.99501 * 359.97438 * 19 18 16 46 46 H 0.97001 * 119.99789 * 180.02562 * 23 22 20 47 47 H 1.09002 * 109.45723 * 330.69884 * 28 11 9 48 48 H 1.08999 * 109.45869 * 210.75003 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1841 2.1257 -1.0368 5 7 2.6251 3.2840 -0.6970 6 6 2.7619 3.3354 0.6283 7 6 3.2447 4.5086 1.4414 8 6 2.3788 2.1089 1.1038 9 6 2.3536 1.6672 2.5081 10 8 1.3540 1.8348 3.1804 11 7 3.4380 1.0770 3.0485 12 6 4.5932 0.7834 2.1795 13 6 5.1809 -0.6004 2.4928 14 6 4.0566 -1.5823 2.7542 15 8 3.7728 -1.5918 4.1470 16 6 2.8754 -0.6788 4.6627 17 1 1.9204 -0.7767 4.1465 18 6 2.6775 -0.9460 6.1562 19 7 2.1571 -2.3024 6.3449 20 6 1.9006 -2.7680 7.6069 21 1 2.0824 -2.1352 8.4632 22 6 1.4071 -4.0530 7.7856 23 7 1.1861 -4.8241 6.7421 24 14 1.0566 -4.6877 9.5072 25 1 -0.3448 -4.3653 9.8778 26 1 1.2515 -6.1596 9.5412 27 1 1.9844 -4.0431 10.4709 28 6 3.4252 0.7545 4.4634 29 1 -0.3634 0.4344 0.9313 30 1 -0.3633 0.5894 -0.8419 31 1 -0.3634 -1.0237 -0.0895 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 4.3281 4.4551 1.5488 35 1 2.9750 5.4363 0.9365 36 1 2.7802 4.4833 2.4272 37 1 5.3604 1.5418 2.3356 38 1 4.2731 0.8087 1.1378 39 1 5.8168 -0.5334 3.3755 40 1 5.7730 -0.9439 1.6446 41 1 3.1681 -1.2758 2.2022 42 1 4.3601 -2.5790 2.4340 43 1 3.6325 -0.8482 6.6724 44 1 1.9690 -0.2247 6.5636 45 1 1.9942 -2.8707 5.5759 46 1 0.8408 -5.7220 6.8670 47 1 2.7888 1.4643 4.9919 48 1 4.4394 0.8127 4.8583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200673027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:50 Heat of formation + Delta-G solvation = 16.920416 kcal Electronic energy + Delta-G solvation = -31083.913895 eV Core-core repulsion = 26983.175158 eV Total energy + Delta-G solvation = -4100.738737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.51387 -41.69903 -39.76036 -37.04957 -36.78895 -36.31691 -34.42704 -33.82621 -32.70798 -32.11583 -30.45186 -28.99946 -27.91509 -26.85373 -25.89944 -25.06100 -23.66010 -22.70318 -22.38428 -22.28849 -20.52592 -19.25298 -19.17863 -18.09441 -17.92956 -17.68307 -17.30220 -16.87597 -16.57295 -16.21240 -15.96356 -15.66731 -15.16822 -15.01103 -14.83187 -14.73689 -14.70434 -14.44485 -13.96317 -13.78262 -13.74426 -13.58180 -13.38561 -13.22196 -13.14650 -13.06616 -12.77528 -12.72148 -12.66046 -12.42001 -12.21502 -12.10405 -12.03968 -11.82723 -11.52746 -11.41366 -11.22711 -10.96352 -10.63928 -10.31486 -9.86792 -8.98886 -7.92955 -5.21823 0.07050 0.64902 1.20243 1.29357 1.48226 1.50486 1.58780 1.68073 2.57223 2.67530 2.89052 3.20177 3.40946 3.43779 3.54818 3.67443 3.69759 3.77717 3.86823 3.97968 4.01395 4.04961 4.16382 4.18576 4.36500 4.38390 4.47021 4.51229 4.53582 4.60101 4.63276 4.68632 4.70957 4.76020 4.86361 4.88100 4.97144 5.03174 5.08161 5.12712 5.17978 5.25655 5.32593 5.49650 5.88800 6.27982 6.65216 6.71179 7.20020 7.34904 8.09614 8.34069 9.30798 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.002959 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.681360 B = 9460.603775 C = 9738.206973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.260 5.260 4 N -0.073 5.073 5 N -0.289 5.289 6 C 0.026 3.974 7 C -0.073 4.073 8 C -0.068 4.068 9 C 0.593 3.407 10 O -0.547 6.547 11 N -0.584 5.584 12 C 0.106 3.894 13 C -0.155 4.155 14 C 0.065 3.935 15 O -0.392 6.392 16 C 0.104 3.896 17 H 0.025 0.975 18 C 0.162 3.838 19 N -0.739 5.739 20 C -0.246 4.246 21 H 0.078 0.922 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.975 3.025 25 H -0.288 1.288 26 H -0.295 1.295 27 H -0.267 1.267 28 C 0.092 3.908 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.040 0.960 42 H 0.100 0.900 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.091 0.909 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.434 14.709 -16.159 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 N -0.058 5.058 4 N -0.051 5.051 5 N -0.154 5.154 6 C -0.114 4.114 7 C -0.131 4.131 8 C -0.203 4.203 9 C 0.376 3.624 10 O -0.423 6.423 11 N -0.315 5.315 12 C -0.015 4.015 13 C -0.193 4.193 14 C -0.011 4.011 15 O -0.311 6.311 16 C 0.044 3.956 17 H 0.042 0.958 18 C 0.035 3.965 19 N -0.382 5.382 20 C -0.377 4.377 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.804 3.196 25 H -0.215 1.215 26 H -0.222 1.222 27 H -0.192 1.192 28 C -0.032 4.032 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.162 0.838 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.058 0.942 42 H 0.118 0.882 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.906 14.731 -17.040 24.221 hybrid contribution -0.878 -0.857 1.450 1.900 sum 8.028 13.874 -15.590 22.360 Atomic orbital electron populations 1.22150 0.92249 1.05561 1.02570 1.22606 0.97275 0.74795 1.07383 1.48089 1.40631 1.13955 1.03131 1.78127 1.16794 0.98262 1.11962 1.74823 1.16685 1.11372 1.12521 1.22616 1.02399 0.95480 0.90937 1.20310 1.02802 0.92610 0.97374 1.21712 1.13120 0.95532 0.89909 1.17107 0.83210 0.77678 0.84366 1.90891 1.32883 1.55935 1.62591 1.47909 1.16109 1.57469 1.10052 1.22224 0.87477 0.98779 0.93066 1.22446 0.98706 0.93034 1.05125 1.22422 0.96975 1.00957 0.80740 1.86400 1.62627 1.57336 1.24700 1.21897 0.90654 0.88679 0.94357 0.95751 1.20771 0.96860 0.86967 0.91928 1.42388 1.78054 1.12474 1.05279 1.19670 1.34624 0.97152 0.86277 0.90409 1.25587 1.02952 0.97272 1.01040 1.69836 1.52916 1.09087 1.30155 0.85114 0.77923 0.76900 0.79663 1.21506 1.22155 1.19224 1.22358 1.04546 0.96082 0.80180 0.93741 0.91014 0.87056 0.83788 0.88099 0.87809 0.88860 0.90736 0.88142 0.90500 0.89495 0.86394 0.94159 0.88216 0.94657 0.94537 0.79379 0.94076 0.89046 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.24 71.98 0.74 -2.05 16 2 C 0.10 1.54 6.99 86.38 0.60 2.15 16 3 N -0.26 -5.48 3.26 -335.44 -1.09 -6.57 16 4 N -0.07 -1.75 13.14 37.02 0.49 -1.26 16 5 N -0.29 -7.22 12.35 -47.88 -0.59 -7.81 16 6 C 0.03 0.57 7.30 42.04 0.31 0.87 16 7 C -0.07 -1.09 10.28 71.23 0.73 -0.35 16 8 C -0.07 -1.56 4.64 40.41 0.19 -1.37 16 9 C 0.59 14.98 6.64 86.61 0.58 15.56 16 10 O -0.55 -18.46 16.59 -4.10 -0.07 -18.53 16 11 N -0.58 -12.12 2.19 -822.05 -1.80 -13.92 16 12 C 0.11 1.48 5.98 86.38 0.52 2.00 16 13 C -0.16 -2.18 5.78 30.31 0.18 -2.00 16 14 C 0.06 1.42 6.38 71.50 0.46 1.87 16 15 O -0.39 -12.61 9.18 -117.90 -1.08 -13.69 16 16 C 0.10 3.43 2.73 31.21 0.09 3.51 16 17 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 18 C 0.16 6.55 5.95 86.38 0.51 7.07 16 19 N -0.74 -38.85 5.49 -343.44 -1.88 -40.73 16 20 C -0.25 -13.98 9.99 84.04 0.84 -13.14 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 22 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 23 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 24 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 C 0.09 2.22 4.82 87.25 0.42 2.65 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.62 6.18 -2.39 -0.01 1.61 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.17 8.02 -2.38 -0.02 1.15 16 37 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.08 1.07 6.32 -2.38 -0.02 1.06 16 39 H 0.09 1.33 8.01 -2.39 -0.02 1.31 16 40 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.04 0.86 5.82 -2.39 -0.01 0.85 16 42 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.37 21.21 7.53 -92.71 -0.70 20.51 16 46 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.09 2.37 7.35 -2.39 -0.02 2.36 16 48 H 0.12 2.27 8.11 -2.39 -0.02 2.25 16 Total: -1.00 -77.42 390.55 3.17 -74.25 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.28 Total: 26.81 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.62 Total: 12.78 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -4.60 Total: -130.21 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.15 Total: -32.22 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -77.42 3.17 -74.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200673027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.172 kcal (2) G-P(sol) polarization free energy of solvation -77.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds