Wall clock time and date at job start Tue Mar 31 2020 20:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35317 * 125.86734 * 125.00036 * 3 2 1 5 5 C 1.35351 * 106.17555 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.74773 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46823 * 125.00531 * 6 5 4 8 8 O 1.21286 * 120.00146 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99815 * 179.97438 * 7 6 5 10 10 C 1.47499 * 118.75701 * 359.97438 * 9 7 6 11 11 C 1.53575 * 111.02681 * 138.35251 * 10 9 7 12 12 C 1.51531 * 109.58276 * 320.01972 * 11 10 9 13 13 O 1.42162 * 108.75286 * 91.40046 * 12 11 10 14 14 C 1.38010 * 119.43856 * 272.76768 * 13 12 11 15 15 H 1.09000 * 109.47416 * 303.43181 * 14 13 12 16 16 C 1.53004 * 109.46960 * 183.43490 * 14 13 12 17 17 N 1.46489 * 109.47245 * 65.00130 * 16 14 13 18 18 C 1.36935 * 120.00248 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99854 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00215 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00024 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47208 * 90.00432 * 22 20 18 24 24 H 1.48500 * 109.46957 * 210.00034 * 22 20 18 25 25 H 1.48501 * 109.47382 * 329.99917 * 22 20 18 26 26 C 1.45126 * 118.75366 * 179.72984 * 9 7 6 27 27 N 1.33764 * 106.49572 * 0.02562 * 5 4 3 28 28 N 1.28638 * 108.88917 * 359.73267 * 27 5 4 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 34 34 H 1.08003 * 126.91145 * 0.02927 * 4 3 2 35 35 H 1.09001 * 109.46759 * 244.99781 * 6 5 4 36 36 H 1.08992 * 109.47155 * 5.00521 * 6 5 4 37 37 H 1.08997 * 109.16980 * 258.74764 * 10 9 7 38 38 H 1.09001 * 109.17299 * 17.95676 * 10 9 7 39 39 H 1.08997 * 109.45184 * 80.05987 * 11 10 9 40 40 H 1.09000 * 109.45299 * 200.01270 * 11 10 9 41 41 H 1.09000 * 109.59026 * 211.17774 * 12 11 10 42 42 H 1.08997 * 109.59236 * 331.62237 * 12 11 10 43 43 H 1.09005 * 109.46736 * 185.00321 * 16 14 13 44 44 H 1.08997 * 109.46824 * 304.99631 * 16 14 13 45 45 H 0.96999 * 120.00298 * 0.02562 * 17 16 14 46 46 H 0.97000 * 119.99847 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.46542 * 29.32228 * 26 9 7 48 48 H 1.09001 * 109.45731 * 149.28525 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8755 1.9191 0.8983 5 6 3.0541 3.2076 0.5243 6 6 3.9229 4.2325 1.2069 7 6 4.8949 4.8104 0.2109 8 8 4.8836 4.4275 -0.9399 9 7 5.7769 5.7529 0.5989 10 6 5.7662 6.1989 2.0048 11 6 7.1957 6.3622 2.5419 12 6 8.0640 5.2321 2.0269 13 8 8.6726 5.6419 0.8092 14 6 8.0023 5.4511 -0.3820 15 1 7.7539 4.3957 -0.4941 16 6 8.8936 5.8915 -1.5450 17 7 10.0684 5.0194 -1.6173 18 6 11.0137 5.2232 -2.5869 19 1 10.8930 6.0267 -3.2984 20 6 12.1272 4.3971 -2.6551 21 7 12.2741 3.4177 -1.7883 22 14 13.4171 4.6756 -3.9773 23 1 14.4517 5.6123 -3.4700 24 1 14.0521 3.3804 -4.3298 25 1 12.7728 5.2555 -5.1831 26 6 6.7046 6.2866 -0.3812 27 7 2.3068 3.3927 -0.5695 28 7 1.7097 2.2902 -0.8574 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.3272 1.4203 1.7431 35 1 3.2973 5.0296 1.6085 36 1 4.4738 3.7586 2.0193 37 1 5.2470 7.1548 2.0731 38 1 5.2385 5.4619 2.6102 39 1 7.6032 7.3155 2.2055 40 1 7.1789 6.3389 3.6315 41 1 8.8355 5.0002 2.7611 42 1 7.4486 4.3502 1.8491 43 1 8.3333 5.8246 -2.4776 44 1 9.2145 6.9211 -1.3870 45 1 10.1763 4.2971 -0.9790 46 1 13.0524 2.8407 -1.8358 47 1 6.2505 6.2456 -1.3712 48 1 6.9401 7.3213 -0.1325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201041329.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:53 Heat of formation + Delta-G solvation = 44.563655 kcal Electronic energy + Delta-G solvation = -29669.420932 eV Core-core repulsion = 25569.880896 eV Total energy + Delta-G solvation = -4099.540036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.41485 -40.48483 -38.41905 -35.83639 -35.55323 -34.53027 -33.10222 -32.63687 -31.13329 -30.85509 -29.46492 -27.92797 -26.51157 -25.00650 -24.91901 -22.85400 -22.06009 -21.70478 -21.20490 -20.86709 -19.00347 -17.65554 -17.38906 -17.08277 -16.55750 -16.46171 -16.29282 -15.85368 -15.20261 -14.90243 -14.82900 -14.60861 -14.18885 -14.00512 -13.74950 -13.51255 -13.18028 -13.02904 -12.95534 -12.80465 -12.61873 -12.47772 -12.17657 -12.11556 -11.90983 -11.69644 -11.52292 -11.30289 -10.92342 -10.88621 -10.75177 -10.74112 -10.20735 -10.20135 -9.98811 -9.77731 -9.62122 -9.33688 -9.29166 -8.78003 -8.46860 -6.79346 -5.64922 -2.92596 1.41358 2.09104 2.37350 2.66628 2.98592 3.51377 3.55735 3.58000 3.94144 4.01352 4.13442 4.32579 4.43627 4.50467 4.59826 4.62006 4.68062 4.73443 4.81347 4.96709 5.01580 5.06027 5.08775 5.24581 5.34100 5.37178 5.41015 5.48693 5.50332 5.55537 5.66363 5.68111 5.70180 5.87801 5.93554 6.01998 6.08011 6.16418 6.38158 6.39996 6.59488 6.74340 6.85878 7.29310 7.79570 8.06815 8.22843 8.41394 8.53639 9.64991 10.23823 10.59775 11.58241 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.002605 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.455124 B =10744.624393 C =12186.232658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 N -0.294 5.294 4 C -0.046 4.046 5 C -0.008 4.008 6 C -0.052 4.052 7 C 0.508 3.492 8 O -0.510 6.510 9 N -0.612 5.612 10 C 0.105 3.895 11 C -0.167 4.167 12 C 0.074 3.926 13 O -0.369 6.369 14 C 0.089 3.911 15 H 0.051 0.949 16 C 0.166 3.834 17 N -0.726 5.726 18 C -0.234 4.234 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.083 3.917 27 N -0.239 5.239 28 N -0.085 5.085 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.189 0.811 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.027 0.973 45 H 0.386 0.614 46 H 0.253 0.747 47 H 0.093 0.907 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.426 -2.974 15.949 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.087 5.087 4 C -0.197 4.197 5 C -0.147 4.147 6 C -0.094 4.094 7 C 0.294 3.706 8 O -0.384 6.384 9 N -0.347 5.347 10 C -0.017 4.017 11 C -0.206 4.206 12 C -0.003 4.003 13 O -0.287 6.287 14 C 0.029 3.971 15 H 0.069 0.931 16 C 0.038 3.962 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.041 4.041 27 N -0.105 5.105 28 N -0.064 5.064 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.206 0.794 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.220 0.780 46 H 0.063 0.937 47 H 0.111 0.889 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.029 -2.733 13.891 28.756 hybrid contribution 1.153 -0.677 0.680 1.500 sum -23.876 -3.410 14.571 28.178 Atomic orbital electron populations 1.22077 0.92673 1.03688 1.04035 1.22097 0.96899 0.76570 1.05378 1.47426 1.30776 1.12091 1.18438 1.23290 1.00739 0.95333 1.00299 1.21208 1.02520 0.94020 0.96916 1.19935 0.95334 0.97000 0.97087 1.20421 0.81292 0.79576 0.89297 1.90794 1.69785 1.58501 1.19331 1.47910 1.35407 1.41074 1.10316 1.21995 0.98039 1.00516 0.81175 1.22518 0.94821 1.01975 1.01248 1.22100 0.96345 0.95080 0.86769 1.86434 1.46622 1.82884 1.12774 1.22177 0.91232 0.98224 0.85452 0.93146 1.20612 0.88610 0.94804 0.92214 1.42224 1.21322 1.36124 1.37333 1.19246 0.99257 1.11452 1.06620 0.91168 1.24731 0.98813 0.98318 0.99340 1.69679 1.30074 1.20510 1.38026 0.86176 0.81856 0.76788 0.81318 1.21790 1.21873 1.20782 1.22292 0.90159 0.98129 0.93496 1.75112 1.07719 1.15744 1.11955 1.78298 1.20965 0.92822 1.14333 0.91794 0.90590 0.89883 0.87664 0.88186 0.79354 0.87291 0.87310 0.91384 0.90040 0.89924 0.89731 0.89388 0.93602 0.94756 0.95470 0.77998 0.93677 0.88857 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.04 37.16 0.37 -0.36 16 2 C 0.11 0.58 7.17 -4.04 -0.03 0.55 16 3 N -0.29 -2.93 3.44 -61.26 -0.21 -3.14 16 4 C -0.05 -0.42 11.49 -17.04 -0.20 -0.61 16 5 C -0.01 -0.09 6.00 -82.78 -0.50 -0.59 16 6 C -0.05 -0.49 4.62 -29.03 -0.13 -0.62 16 7 C 0.51 7.10 7.62 -10.98 -0.08 7.02 16 8 O -0.51 -9.81 15.03 5.55 0.08 -9.73 16 9 N -0.61 -7.61 2.20 -172.77 -0.38 -7.99 16 10 C 0.11 0.85 6.00 -3.20 -0.02 0.84 16 11 C -0.17 -1.51 5.78 -27.18 -0.16 -1.66 16 12 C 0.07 0.95 6.38 36.41 0.23 1.18 16 13 O -0.37 -6.63 9.38 -26.52 -0.25 -6.88 16 14 C 0.09 1.65 2.67 -26.03 -0.07 1.58 16 15 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 16 C 0.17 3.67 5.92 -4.05 -0.02 3.65 16 17 N -0.73 -19.96 5.54 -59.91 -0.33 -20.29 16 18 C -0.23 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -29.59 13.06 55.49 0.72 -28.87 16 22 Si 0.91 23.38 29.55 -169.99 -5.02 18.36 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.08 1.25 4.83 -4.08 -0.02 1.23 16 27 N -0.24 -3.75 11.82 33.29 0.39 -3.36 16 28 N -0.08 -1.19 12.92 60.35 0.78 -0.41 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.11 0.22 8.07 -51.93 -0.42 -0.20 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.19 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.11 0.78 8.04 -51.93 -0.42 0.36 16 36 H 0.11 0.65 7.39 -51.93 -0.38 0.26 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.43 5.88 -51.93 -0.31 0.13 16 39 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.58 7.40 -51.93 -0.38 0.19 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.39 11.27 7.65 -40.82 -0.31 10.95 16 46 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.09 1.55 7.27 -51.93 -0.38 1.17 16 48 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -40.84 391.69 -6.81 -47.65 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.63 Total: 4.28 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -0.87 Total: 4.47 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 0.98 Total: -64.05 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.17 Total: -16.61 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -40.84 -6.81 -47.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201041329.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.214 kcal (2) G-P(sol) polarization free energy of solvation -40.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds