Wall clock time and date at job start Tue Mar 31 2020 20:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35317 * 125.86734 * 125.00036 * 3 2 1 5 5 C 1.35351 * 106.17555 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.74773 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46823 * 125.00531 * 6 5 4 8 8 O 1.21286 * 120.00146 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99815 * 179.97438 * 7 6 5 10 10 C 1.47499 * 118.75701 * 359.97438 * 9 7 6 11 11 C 1.53575 * 111.02681 * 138.35251 * 10 9 7 12 12 C 1.51531 * 109.58276 * 320.01972 * 11 10 9 13 13 O 1.42162 * 108.75286 * 91.40046 * 12 11 10 14 14 C 1.38010 * 119.43856 * 272.76768 * 13 12 11 15 15 H 1.09000 * 109.47416 * 303.43181 * 14 13 12 16 16 C 1.53004 * 109.46960 * 183.43490 * 14 13 12 17 17 N 1.46489 * 109.47245 * 65.00130 * 16 14 13 18 18 C 1.36935 * 120.00248 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99854 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00215 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00024 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47208 * 90.00432 * 22 20 18 24 24 H 1.48500 * 109.46957 * 210.00034 * 22 20 18 25 25 H 1.48501 * 109.47382 * 329.99917 * 22 20 18 26 26 C 1.45126 * 118.75366 * 179.72984 * 9 7 6 27 27 N 1.33764 * 106.49572 * 0.02562 * 5 4 3 28 28 N 1.28638 * 108.88917 * 359.73267 * 27 5 4 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 34 34 H 1.08003 * 126.91145 * 0.02927 * 4 3 2 35 35 H 1.09001 * 109.46759 * 244.99781 * 6 5 4 36 36 H 1.08992 * 109.47155 * 5.00521 * 6 5 4 37 37 H 1.08997 * 109.16980 * 258.74764 * 10 9 7 38 38 H 1.09001 * 109.17299 * 17.95676 * 10 9 7 39 39 H 1.08997 * 109.45184 * 80.05987 * 11 10 9 40 40 H 1.09000 * 109.45299 * 200.01270 * 11 10 9 41 41 H 1.09000 * 109.59026 * 211.17774 * 12 11 10 42 42 H 1.08997 * 109.59236 * 331.62237 * 12 11 10 43 43 H 1.09005 * 109.46736 * 185.00321 * 16 14 13 44 44 H 1.08997 * 109.46824 * 304.99631 * 16 14 13 45 45 H 0.96999 * 120.00298 * 0.02562 * 17 16 14 46 46 H 0.97000 * 119.99847 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.46542 * 29.32228 * 26 9 7 48 48 H 1.09001 * 109.45731 * 149.28525 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8755 1.9191 0.8983 5 6 3.0541 3.2076 0.5243 6 6 3.9229 4.2325 1.2069 7 6 4.8949 4.8104 0.2109 8 8 4.8836 4.4275 -0.9399 9 7 5.7769 5.7529 0.5989 10 6 5.7662 6.1989 2.0048 11 6 7.1957 6.3622 2.5419 12 6 8.0640 5.2321 2.0269 13 8 8.6726 5.6419 0.8092 14 6 8.0023 5.4511 -0.3820 15 1 7.7539 4.3957 -0.4941 16 6 8.8936 5.8915 -1.5450 17 7 10.0684 5.0194 -1.6173 18 6 11.0137 5.2232 -2.5869 19 1 10.8930 6.0267 -3.2984 20 6 12.1272 4.3971 -2.6551 21 7 12.2741 3.4177 -1.7883 22 14 13.4171 4.6756 -3.9773 23 1 14.4517 5.6123 -3.4700 24 1 14.0521 3.3804 -4.3298 25 1 12.7728 5.2555 -5.1831 26 6 6.7046 6.2866 -0.3812 27 7 2.3068 3.3927 -0.5695 28 7 1.7097 2.2902 -0.8574 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.3272 1.4203 1.7431 35 1 3.2973 5.0296 1.6085 36 1 4.4738 3.7586 2.0193 37 1 5.2470 7.1548 2.0731 38 1 5.2385 5.4619 2.6102 39 1 7.6032 7.3155 2.2055 40 1 7.1789 6.3389 3.6315 41 1 8.8355 5.0002 2.7611 42 1 7.4486 4.3502 1.8491 43 1 8.3333 5.8246 -2.4776 44 1 9.2145 6.9211 -1.3870 45 1 10.1763 4.2971 -0.9790 46 1 13.0524 2.8407 -1.8358 47 1 6.2505 6.2456 -1.3712 48 1 6.9401 7.3213 -0.1325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201041329.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:52 Heat of formation + Delta-G solvation = 13.064342 kcal Electronic energy + Delta-G solvation = -29670.786845 eV Core-core repulsion = 25569.880896 eV Total energy + Delta-G solvation = -4100.905949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.19542 -41.57868 -39.64907 -36.89263 -36.45154 -36.18566 -34.38600 -33.64951 -32.64533 -31.72792 -30.64309 -29.16116 -27.51719 -26.54123 -25.55768 -24.56947 -23.03635 -22.72131 -22.25835 -21.95505 -19.93008 -19.27805 -18.48416 -18.15976 -17.71676 -17.48799 -17.26685 -16.93375 -16.51881 -16.14562 -15.78171 -15.53671 -15.34534 -15.14687 -14.88084 -14.75932 -14.55129 -14.35114 -13.92765 -13.74118 -13.49803 -13.46282 -13.21258 -13.10412 -12.95297 -12.77454 -12.71086 -12.56357 -12.32774 -12.25002 -12.10402 -11.96144 -11.82537 -11.66532 -11.43264 -10.99681 -10.98062 -10.85456 -10.51178 -10.11296 -9.58796 -9.03316 -7.95839 -5.25730 0.69256 1.44323 1.45319 1.48637 1.56979 1.58894 1.66474 2.06956 2.55133 2.75819 3.30056 3.37376 3.55442 3.66620 3.76696 3.89448 3.93186 3.96878 4.04204 4.11336 4.14190 4.21523 4.28327 4.33393 4.39392 4.43541 4.52138 4.54143 4.56491 4.72213 4.74038 4.74328 4.80203 4.88771 4.93655 5.00852 5.09960 5.12551 5.19062 5.25471 5.26863 5.45413 5.59277 5.75259 6.24954 6.35345 6.78965 7.23147 7.30932 7.58465 8.04528 8.30574 9.28215 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.002605 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.455124 B =10744.624393 C =12186.232658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.289 5.289 4 C -0.029 4.029 5 C -0.036 4.036 6 C -0.042 4.042 7 C 0.499 3.501 8 O -0.577 6.577 9 N -0.609 5.609 10 C 0.098 3.902 11 C -0.157 4.157 12 C 0.062 3.938 13 O -0.399 6.399 14 C 0.110 3.890 15 H 0.017 0.983 16 C 0.162 3.838 17 N -0.740 5.740 18 C -0.249 4.249 19 H 0.076 0.924 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.980 3.020 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.270 1.270 26 C 0.096 3.904 27 N -0.294 5.294 28 N -0.129 5.129 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.100 0.900 34 H 0.240 0.760 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.029 0.971 44 H 0.033 0.967 45 H 0.373 0.627 46 H 0.252 0.748 47 H 0.069 0.931 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.085 -3.011 19.030 31.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.019 4.019 3 N -0.083 5.083 4 C -0.181 4.181 5 C -0.176 4.176 6 C -0.083 4.083 7 C 0.288 3.712 8 O -0.455 6.455 9 N -0.342 5.342 10 C -0.022 4.022 11 C -0.194 4.194 12 C -0.013 4.013 13 O -0.318 6.318 14 C 0.050 3.950 15 H 0.035 0.965 16 C 0.034 3.966 17 N -0.382 5.382 18 C -0.380 4.380 19 H 0.094 0.906 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.808 3.192 23 H -0.209 1.209 24 H -0.219 1.219 25 H -0.195 1.195 26 C -0.029 4.029 27 N -0.159 5.159 28 N -0.108 5.108 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.164 0.836 33 H 0.119 0.881 34 H 0.256 0.744 35 H 0.155 0.845 36 H 0.172 0.828 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.088 0.912 40 H 0.143 0.857 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.205 0.795 46 H 0.061 0.939 47 H 0.088 0.912 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.744 -2.728 16.998 30.970 hybrid contribution 1.343 -0.719 -0.181 1.534 sum -24.400 -3.447 16.818 29.834 Atomic orbital electron populations 1.22044 0.92288 1.04948 1.02633 1.22575 0.97332 0.74586 1.07419 1.47872 1.30052 1.12900 1.17454 1.24067 0.99103 0.94392 1.00521 1.21824 1.03018 0.96088 0.96713 1.20106 0.94428 0.97495 0.96264 1.21349 0.81555 0.78920 0.89336 1.90771 1.71692 1.60653 1.22388 1.48045 1.34046 1.40447 1.11712 1.22417 0.98141 1.03022 0.78626 1.22441 0.94201 0.99310 1.03494 1.22456 0.97348 0.96870 0.84675 1.86352 1.48276 1.83317 1.13847 1.21702 0.91744 0.96649 0.84955 0.96518 1.20746 0.87588 0.94194 0.94029 1.42412 1.22533 1.36566 1.36673 1.19683 0.99861 1.11464 1.07039 0.90560 1.25661 1.01179 0.98248 1.01950 1.69849 1.30749 1.21558 1.39980 0.85045 0.78851 0.76598 0.78676 1.20941 1.21927 1.19494 1.21918 0.88850 0.98391 0.93726 1.75028 1.09527 1.17205 1.14175 1.78198 1.22671 0.93645 1.16317 0.91937 0.93210 0.87217 0.83579 0.88144 0.74404 0.84480 0.82838 0.89012 0.86071 0.91184 0.85706 0.88685 0.93495 0.95299 0.94882 0.79499 0.93933 0.91232 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 10.04 71.98 0.72 -0.52 16 2 C 0.10 0.85 7.17 86.38 0.62 1.46 16 3 N -0.29 -5.46 3.44 -347.72 -1.20 -6.66 16 4 C -0.03 -0.45 11.49 83.49 0.96 0.51 16 5 C -0.04 -0.84 6.00 41.60 0.25 -0.59 16 6 C -0.04 -0.67 4.62 29.10 0.13 -0.53 16 7 C 0.50 13.60 7.62 87.66 0.67 14.26 16 8 O -0.58 -23.24 15.03 -3.05 -0.05 -23.28 16 9 N -0.61 -14.20 2.20 -818.92 -1.80 -16.00 16 10 C 0.10 1.17 6.00 86.38 0.52 1.69 16 11 C -0.16 -2.23 5.78 30.31 0.18 -2.05 16 12 C 0.06 1.48 6.38 71.50 0.46 1.94 16 13 O -0.40 -14.43 9.38 -117.80 -1.11 -15.53 16 14 C 0.11 4.22 2.67 31.05 0.08 4.30 16 15 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 16 C 0.16 7.47 5.92 86.38 0.51 7.98 16 17 N -0.74 -42.22 5.54 -343.47 -1.90 -44.12 16 18 C -0.25 -15.10 9.99 84.03 0.84 -14.26 16 19 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 20 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 21 N -0.97 -62.88 13.06 21.65 0.28 -62.60 16 22 Si 0.98 48.63 29.55 68.60 2.03 50.65 16 23 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 26 C 0.10 2.93 4.83 87.09 0.42 3.35 16 27 N -0.29 -9.53 11.82 -48.60 -0.57 -10.11 16 28 N -0.13 -3.78 12.92 37.02 0.48 -3.30 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 31 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.15 0.03 8.07 -2.39 -0.02 0.01 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.24 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.14 1.39 8.04 -2.39 -0.02 1.37 16 36 H 0.15 0.97 7.39 -2.39 -0.02 0.96 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.12 0.52 5.88 -2.39 -0.01 0.51 16 39 H 0.07 1.23 8.01 -2.39 -0.02 1.21 16 40 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.10 7.40 -2.39 -0.02 1.08 16 43 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.37 22.79 7.65 -92.71 -0.71 22.08 16 46 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 47 H 0.07 2.45 7.27 -2.39 -0.02 2.43 16 48 H 0.10 2.66 8.11 -2.39 -0.02 2.64 16 Total: -1.00 -97.76 391.69 3.24 -94.52 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.26 Total: 23.23 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 6.82 Total: 13.20 kcal Atomic # 7 Polarization: -138.07 SS G_CDS: -4.71 Total: -142.79 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -1.15 Total: -38.82 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.65 kcal Total: -97.76 3.24 -94.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201041329.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.582 kcal (2) G-P(sol) polarization free energy of solvation -97.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds