Wall clock time and date at job start Tue Mar 31 2020 20:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47610 * 2 1 4 4 C 1.35310 * 125.87389 * 124.99989 * 3 2 1 5 5 C 1.35345 * 106.17858 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.75053 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46900 * 125.00109 * 6 5 4 8 8 O 1.21284 * 120.00160 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99707 * 180.02562 * 7 6 5 10 10 C 1.47504 * 118.76018 * 359.97438 * 9 7 6 11 11 C 1.53569 * 111.03023 * 221.60677 * 10 9 7 12 12 C 1.51540 * 109.57768 * 39.98490 * 11 10 9 13 13 O 1.42155 * 108.75849 * 268.59581 * 12 11 10 14 14 C 1.38015 * 119.43670 * 87.22027 * 13 12 11 15 15 H 1.09003 * 109.46972 * 56.58499 * 14 13 12 16 16 C 1.53004 * 109.46831 * 176.57250 * 14 13 12 17 17 N 1.46500 * 109.47127 * 300.00318 * 16 14 13 18 18 C 1.36936 * 119.99909 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00082 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99693 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00282 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99806 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46824 * 90.00194 * 22 20 18 24 24 H 1.48495 * 109.47136 * 210.00164 * 22 20 18 25 25 H 1.48500 * 109.47173 * 330.00350 * 22 20 18 26 26 C 1.45127 * 118.75555 * 179.97438 * 9 7 6 27 27 N 1.33773 * 106.49744 * 0.26338 * 5 4 3 28 28 N 1.28635 * 108.88487 * 359.55983 * 27 5 4 29 29 H 1.08999 * 109.47745 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46922 * 300.00119 * 1 2 3 31 31 H 1.09005 * 109.47280 * 59.99979 * 1 2 3 32 32 H 1.09006 * 109.47096 * 240.00157 * 2 1 3 33 33 H 1.09005 * 109.47280 * 120.00021 * 2 1 3 34 34 H 1.08007 * 126.90806 * 359.94309 * 4 3 2 35 35 H 1.09001 * 109.46984 * 5.00291 * 6 5 4 36 36 H 1.09000 * 109.46890 * 245.00148 * 6 5 4 37 37 H 1.08998 * 109.16054 * 101.21131 * 10 9 7 38 38 H 1.09000 * 109.16618 * 342.00759 * 10 9 7 39 39 H 1.09003 * 109.45722 * 279.95276 * 11 10 9 40 40 H 1.08997 * 109.45202 * 160.01296 * 11 10 9 41 41 H 1.08997 * 109.59138 * 148.81755 * 12 11 10 42 42 H 1.08990 * 109.59168 * 28.37745 * 12 11 10 43 43 H 1.08996 * 109.47171 * 59.99918 * 16 14 13 44 44 H 1.08995 * 109.47184 * 180.02562 * 16 14 13 45 45 H 0.97001 * 120.00138 * 359.97438 * 17 16 14 46 46 H 0.97002 * 120.00339 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.45926 * 210.74924 * 26 9 7 48 48 H 1.09000 * 109.45824 * 330.71831 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9190 0.8981 5 6 3.0543 3.2075 0.5242 6 6 3.9232 4.2323 1.2067 7 6 4.8954 4.8100 0.2106 8 8 4.8841 4.4269 -0.9401 9 7 5.7780 5.7517 0.5987 10 6 5.7681 6.1971 2.0049 11 6 5.9404 7.7200 2.1018 12 6 5.1418 8.3923 1.0032 13 8 5.9777 8.5559 -0.1349 14 6 6.0762 7.5336 -1.0568 15 1 5.0829 7.2837 -1.4297 16 6 6.9605 7.9814 -2.2223 17 7 6.3677 9.1593 -2.8606 18 6 6.9871 9.7405 -3.9347 19 1 7.9128 9.3308 -4.3111 20 6 6.4251 10.8563 -4.5398 21 7 5.2972 11.3559 -4.0809 22 14 7.2704 11.6496 -6.0047 23 1 6.7746 11.0277 -7.2588 24 1 6.9707 13.1039 -6.0212 25 1 8.7377 11.4478 -5.8985 26 6 6.7023 6.2891 -0.3826 27 7 2.3029 3.3940 -0.5667 28 7 1.7062 2.2915 -0.8549 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3263 1.4205 1.7437 35 1 4.4741 3.7584 2.0191 36 1 3.2977 5.0295 1.6083 37 1 6.5832 5.7100 2.5402 38 1 4.8205 5.9142 2.4632 39 1 6.9947 7.9739 1.9915 40 1 5.5839 8.0646 3.0725 41 1 4.7970 9.3676 1.3466 42 1 4.2855 7.7709 0.7413 43 1 7.9538 8.2315 -1.8496 44 1 7.0380 7.1743 -2.9506 45 1 5.5361 9.5271 -2.5228 46 1 4.9043 12.1354 -4.5039 47 1 7.6318 6.5726 0.1111 48 1 6.9092 5.5322 -1.1392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201041330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:56 Heat of formation + Delta-G solvation = 45.713145 kcal Electronic energy + Delta-G solvation = -29637.817470 eV Core-core repulsion = 25538.327279 eV Total energy + Delta-G solvation = -4099.490191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.42408 -40.46314 -38.38784 -35.85039 -35.53985 -34.47519 -33.09011 -32.61307 -31.14501 -30.81209 -29.45143 -27.90810 -26.48375 -25.02026 -24.89321 -22.82814 -22.06920 -21.68529 -21.21106 -20.79595 -19.00431 -17.66344 -17.38586 -17.05924 -16.55504 -16.45037 -16.24464 -15.84633 -15.19959 -14.97257 -14.73634 -14.53967 -14.24119 -13.92070 -13.83783 -13.48759 -13.18317 -12.99960 -12.92151 -12.85547 -12.52540 -12.49817 -12.14036 -12.12170 -11.87622 -11.67954 -11.52522 -11.27815 -10.89127 -10.85538 -10.72895 -10.68863 -10.21516 -10.16760 -9.95508 -9.77975 -9.58085 -9.29922 -9.28849 -8.73671 -8.45064 -6.74424 -5.60068 -2.87801 1.39656 2.07359 2.38173 2.64234 3.00317 3.54516 3.58570 3.60788 3.91824 4.06341 4.12402 4.30175 4.42191 4.46856 4.55793 4.65276 4.72001 4.74186 4.79387 4.97718 5.00248 5.05956 5.08429 5.23230 5.34951 5.39096 5.44334 5.50565 5.53424 5.57414 5.67379 5.70628 5.73169 5.89466 5.95129 6.06376 6.10316 6.20485 6.36637 6.44832 6.60302 6.77622 6.89807 7.29303 7.83140 8.12141 8.22336 8.42127 8.58351 9.69636 10.29224 10.65450 11.62963 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.002501 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.407987 B =11191.536802 C =12559.872339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.295 5.295 4 C -0.049 4.049 5 C -0.007 4.007 6 C -0.052 4.052 7 C 0.508 3.492 8 O -0.511 6.511 9 N -0.613 5.613 10 C 0.105 3.895 11 C -0.167 4.167 12 C 0.073 3.927 13 O -0.368 6.368 14 C 0.088 3.912 15 H 0.053 0.947 16 C 0.167 3.833 17 N -0.725 5.725 18 C -0.235 4.235 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.083 3.917 27 N -0.235 5.235 28 N -0.083 5.083 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.189 0.811 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.025 0.975 44 H 0.034 0.966 45 H 0.388 0.612 46 H 0.253 0.747 47 H 0.082 0.918 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 -24.425 22.164 33.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.008 4.008 3 N -0.089 5.089 4 C -0.200 4.200 5 C -0.146 4.146 6 C -0.094 4.094 7 C 0.294 3.706 8 O -0.385 6.385 9 N -0.347 5.347 10 C -0.017 4.017 11 C -0.205 4.205 12 C -0.004 4.004 13 O -0.285 6.285 14 C 0.028 3.972 15 H 0.071 0.929 16 C 0.038 3.962 17 N -0.369 5.369 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.040 4.040 27 N -0.101 5.101 28 N -0.062 5.062 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.206 0.794 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.051 0.949 45 H 0.222 0.778 46 H 0.063 0.937 47 H 0.100 0.900 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.161 -24.151 20.116 32.029 hybrid contribution 0.647 -0.120 0.518 0.838 sum -5.513 -24.271 20.633 32.330 Atomic orbital electron populations 1.22082 0.92640 1.03674 1.04175 1.22076 0.96976 0.76613 1.05177 1.47461 1.30750 1.12060 1.18610 1.23244 1.01048 0.95381 1.00288 1.21231 1.02494 0.93929 0.96958 1.19942 0.95430 0.96973 0.97058 1.20417 0.81321 0.79642 0.89204 1.90789 1.68894 1.59628 1.19192 1.47925 1.36149 1.40259 1.10381 1.21999 1.02396 0.95857 0.81468 1.22515 1.03362 0.94096 1.00561 1.22109 0.92317 1.00517 0.85458 1.86434 1.66491 1.42045 1.33572 1.22264 0.99499 0.86293 0.89130 0.92934 1.20608 0.94428 0.91125 0.90015 1.42212 1.28228 1.30904 1.35583 1.19237 1.04440 1.07708 1.05256 0.91234 1.24737 0.97663 0.98870 0.99926 1.69682 1.19873 1.25533 1.43031 0.86184 0.78650 0.78513 0.82823 1.21824 1.21870 1.20835 1.22377 0.92211 0.97384 0.92032 1.75190 1.07427 1.15576 1.11945 1.78350 1.20770 0.92724 1.14382 0.89909 0.91751 0.90500 0.88285 0.87774 0.79440 0.87357 0.87210 0.91462 0.90018 0.89955 0.89747 0.89350 0.93442 0.95685 0.94869 0.77839 0.93666 0.89999 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.04 37.15 0.37 -0.35 16 2 C 0.11 0.52 7.17 -4.05 -0.03 0.49 16 3 N -0.30 -2.83 3.44 -61.26 -0.21 -3.04 16 4 C -0.05 -0.42 11.49 -17.05 -0.20 -0.61 16 5 C -0.01 -0.09 6.00 -82.78 -0.50 -0.58 16 6 C -0.05 -0.49 4.62 -29.03 -0.13 -0.62 16 7 C 0.51 7.05 7.62 -10.99 -0.08 6.97 16 8 O -0.51 -9.74 15.04 5.55 0.08 -9.66 16 9 N -0.61 -7.58 2.19 -172.50 -0.38 -7.96 16 10 C 0.11 0.86 6.00 -3.20 -0.02 0.84 16 11 C -0.17 -1.58 5.79 -27.17 -0.16 -1.73 16 12 C 0.07 0.99 6.37 36.42 0.23 1.23 16 13 O -0.37 -6.85 9.18 -26.54 -0.24 -7.09 16 14 C 0.09 1.68 2.73 -25.80 -0.07 1.61 16 15 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 16 C 0.17 3.75 5.95 -4.04 -0.02 3.72 16 17 N -0.73 -20.28 5.49 -59.91 -0.33 -20.61 16 18 C -0.24 -7.07 9.99 -15.06 -0.15 -7.22 16 19 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -30.01 13.06 55.49 0.72 -29.29 16 22 Si 0.91 23.65 29.55 -169.99 -5.02 18.63 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 26 C 0.08 1.25 4.86 -3.85 -0.02 1.24 16 27 N -0.23 -3.82 11.84 33.29 0.39 -3.43 16 28 N -0.08 -1.18 12.92 60.35 0.78 -0.40 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.14 8.07 -51.93 -0.42 -0.28 16 34 H 0.19 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.11 0.55 8.02 -51.93 -0.42 0.14 16 36 H 0.11 0.86 7.41 -51.93 -0.38 0.48 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.46 5.88 -51.93 -0.31 0.15 16 39 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.66 7.40 -51.93 -0.38 0.27 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.39 11.55 7.53 -40.82 -0.31 11.24 16 46 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 47 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 48 H 0.09 1.49 7.27 -51.93 -0.38 1.11 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -41.55 391.46 -6.80 -48.35 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.63 Total: 4.24 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.87 Total: 4.37 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: 0.98 Total: -64.74 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.16 Total: -16.75 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.02 Total: 18.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -41.55 -6.80 -48.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201041330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.066 kcal (2) G-P(sol) polarization free energy of solvation -41.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds