Wall clock time and date at job start Tue Mar 31 2020 20:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47610 * 2 1 4 4 C 1.35310 * 125.87389 * 124.99989 * 3 2 1 5 5 C 1.35345 * 106.17858 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.75053 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46900 * 125.00109 * 6 5 4 8 8 O 1.21284 * 120.00160 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99707 * 180.02562 * 7 6 5 10 10 C 1.47504 * 118.76018 * 359.97438 * 9 7 6 11 11 C 1.53569 * 111.03023 * 221.60677 * 10 9 7 12 12 C 1.51540 * 109.57768 * 39.98490 * 11 10 9 13 13 O 1.42155 * 108.75849 * 268.59581 * 12 11 10 14 14 C 1.38015 * 119.43670 * 87.22027 * 13 12 11 15 15 H 1.09003 * 109.46972 * 56.58499 * 14 13 12 16 16 C 1.53004 * 109.46831 * 176.57250 * 14 13 12 17 17 N 1.46500 * 109.47127 * 300.00318 * 16 14 13 18 18 C 1.36936 * 119.99909 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00082 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99693 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00282 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99806 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46824 * 90.00194 * 22 20 18 24 24 H 1.48495 * 109.47136 * 210.00164 * 22 20 18 25 25 H 1.48500 * 109.47173 * 330.00350 * 22 20 18 26 26 C 1.45127 * 118.75555 * 179.97438 * 9 7 6 27 27 N 1.33773 * 106.49744 * 0.26338 * 5 4 3 28 28 N 1.28635 * 108.88487 * 359.55983 * 27 5 4 29 29 H 1.08999 * 109.47745 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46922 * 300.00119 * 1 2 3 31 31 H 1.09005 * 109.47280 * 59.99979 * 1 2 3 32 32 H 1.09006 * 109.47096 * 240.00157 * 2 1 3 33 33 H 1.09005 * 109.47280 * 120.00021 * 2 1 3 34 34 H 1.08007 * 126.90806 * 359.94309 * 4 3 2 35 35 H 1.09001 * 109.46984 * 5.00291 * 6 5 4 36 36 H 1.09000 * 109.46890 * 245.00148 * 6 5 4 37 37 H 1.08998 * 109.16054 * 101.21131 * 10 9 7 38 38 H 1.09000 * 109.16618 * 342.00759 * 10 9 7 39 39 H 1.09003 * 109.45722 * 279.95276 * 11 10 9 40 40 H 1.08997 * 109.45202 * 160.01296 * 11 10 9 41 41 H 1.08997 * 109.59138 * 148.81755 * 12 11 10 42 42 H 1.08990 * 109.59168 * 28.37745 * 12 11 10 43 43 H 1.08996 * 109.47171 * 59.99918 * 16 14 13 44 44 H 1.08995 * 109.47184 * 180.02562 * 16 14 13 45 45 H 0.97001 * 120.00138 * 359.97438 * 17 16 14 46 46 H 0.97002 * 120.00339 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.45926 * 210.74924 * 26 9 7 48 48 H 1.09000 * 109.45824 * 330.71831 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9190 0.8981 5 6 3.0543 3.2075 0.5242 6 6 3.9232 4.2323 1.2067 7 6 4.8954 4.8100 0.2106 8 8 4.8841 4.4269 -0.9401 9 7 5.7780 5.7517 0.5987 10 6 5.7681 6.1971 2.0049 11 6 5.9404 7.7200 2.1018 12 6 5.1418 8.3923 1.0032 13 8 5.9777 8.5559 -0.1349 14 6 6.0762 7.5336 -1.0568 15 1 5.0829 7.2837 -1.4297 16 6 6.9605 7.9814 -2.2223 17 7 6.3677 9.1593 -2.8606 18 6 6.9871 9.7405 -3.9347 19 1 7.9128 9.3308 -4.3111 20 6 6.4251 10.8563 -4.5398 21 7 5.2972 11.3559 -4.0809 22 14 7.2704 11.6496 -6.0047 23 1 6.7746 11.0277 -7.2588 24 1 6.9707 13.1039 -6.0212 25 1 8.7377 11.4478 -5.8985 26 6 6.7023 6.2891 -0.3826 27 7 2.3029 3.3940 -0.5667 28 7 1.7062 2.2915 -0.8549 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3263 1.4205 1.7437 35 1 4.4741 3.7584 2.0191 36 1 3.2977 5.0295 1.6083 37 1 6.5832 5.7100 2.5402 38 1 4.8205 5.9142 2.4632 39 1 6.9947 7.9739 1.9915 40 1 5.5839 8.0646 3.0725 41 1 4.7970 9.3676 1.3466 42 1 4.2855 7.7709 0.7413 43 1 7.9538 8.2315 -1.8496 44 1 7.0380 7.1743 -2.9506 45 1 5.5361 9.5271 -2.5228 46 1 4.9043 12.1354 -4.5039 47 1 7.6318 6.5726 0.1111 48 1 6.9092 5.5322 -1.1392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201041330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:55 Heat of formation + Delta-G solvation = 13.099877 kcal Electronic energy + Delta-G solvation = -29639.231687 eV Core-core repulsion = 25538.327279 eV Total energy + Delta-G solvation = -4100.904408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.18700 -41.56605 -39.64818 -36.88655 -36.44449 -36.17480 -34.37589 -33.64444 -32.63929 -31.72100 -30.63614 -29.15792 -27.51802 -26.53692 -25.55767 -24.57406 -23.01457 -22.72539 -22.25660 -21.94540 -19.92650 -19.26839 -18.47749 -18.15124 -17.72032 -17.47259 -17.31569 -16.89440 -16.51488 -16.16134 -15.81526 -15.44074 -15.29895 -15.14530 -14.89596 -14.79570 -14.62917 -14.33070 -13.91372 -13.68873 -13.52993 -13.45562 -13.19212 -13.09033 -12.96399 -12.77741 -12.68156 -12.56174 -12.31251 -12.25367 -12.11152 -11.96460 -11.82140 -11.62180 -11.44717 -10.99289 -10.98073 -10.85579 -10.51612 -10.09742 -9.58124 -9.02864 -7.94882 -5.25225 0.71279 1.44468 1.46557 1.48952 1.57185 1.60763 1.65096 2.09728 2.55475 2.74507 3.32028 3.37903 3.55364 3.67422 3.78685 3.89639 3.92472 3.97846 4.04991 4.10795 4.17203 4.21050 4.29302 4.33506 4.39124 4.43287 4.50609 4.54145 4.56198 4.71221 4.73376 4.74488 4.81283 4.87986 4.92944 5.02593 5.10309 5.13360 5.17999 5.25873 5.26752 5.45238 5.59654 5.77720 6.25268 6.35880 6.77715 7.23662 7.31077 7.60821 8.05546 8.31330 9.29250 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.002501 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.407987 B =11191.536802 C =12559.872339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.022 4.022 5 C -0.038 4.038 6 C -0.043 4.043 7 C 0.499 3.501 8 O -0.577 6.577 9 N -0.610 5.610 10 C 0.099 3.901 11 C -0.157 4.157 12 C 0.062 3.938 13 O -0.397 6.397 14 C 0.106 3.894 15 H 0.011 0.989 16 C 0.163 3.837 17 N -0.740 5.740 18 C -0.249 4.249 19 H 0.078 0.922 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.982 3.018 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.265 1.265 26 C 0.099 3.901 27 N -0.302 5.302 28 N -0.133 5.133 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.151 0.849 34 H 0.247 0.753 35 H 0.165 0.835 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.373 0.627 46 H 0.251 0.749 47 H 0.105 0.895 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 -26.578 25.950 37.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 N -0.083 5.083 4 C -0.174 4.174 5 C -0.179 4.179 6 C -0.083 4.083 7 C 0.288 3.712 8 O -0.455 6.455 9 N -0.343 5.343 10 C -0.021 4.021 11 C -0.195 4.195 12 C -0.014 4.014 13 O -0.316 6.316 14 C 0.045 3.955 15 H 0.029 0.971 16 C 0.036 3.964 17 N -0.383 5.383 18 C -0.380 4.380 19 H 0.096 0.904 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.810 3.190 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.190 1.190 26 C -0.026 4.026 27 N -0.167 5.167 28 N -0.112 5.112 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.168 0.832 34 H 0.263 0.737 35 H 0.182 0.818 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.141 0.859 41 H 0.110 0.890 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.205 0.795 46 H 0.060 0.940 47 H 0.123 0.877 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.751 -26.339 23.943 35.910 hybrid contribution 0.175 0.481 -0.564 0.761 sum -4.575 -25.858 23.379 35.159 Atomic orbital electron populations 1.22057 0.92725 1.04921 1.02461 1.22578 0.97019 0.74521 1.07611 1.47929 1.29947 1.12861 1.17550 1.24081 0.98934 0.94089 1.00324 1.21864 1.03046 0.96264 0.96687 1.20121 0.94419 0.97238 0.96551 1.21353 0.81395 0.79181 0.89240 1.90765 1.70644 1.61898 1.22215 1.48059 1.35041 1.39550 1.11638 1.22423 1.05823 0.94935 0.78946 1.22439 1.01975 0.94773 1.00273 1.22434 0.92387 1.01416 0.85183 1.86347 1.67685 1.42613 1.34988 1.21844 0.96791 0.88038 0.88808 0.97110 1.20756 0.95364 0.89104 0.91223 1.42426 1.27881 1.32267 1.35693 1.19704 1.04700 1.07869 1.05745 0.90381 1.25710 0.98577 0.99724 1.03279 1.69868 1.21619 1.26056 1.44729 0.85015 0.78291 0.77013 0.78665 1.21443 1.21801 1.19003 1.21995 0.93290 0.94752 0.92606 1.75102 1.09601 1.17341 1.14662 1.78243 1.22679 0.93600 1.16653 0.87105 0.92110 0.93545 0.87953 0.83167 0.73737 0.81765 0.85618 0.87980 0.86523 0.90803 0.85891 0.89030 0.94242 0.94654 0.95333 0.79547 0.93981 0.87724 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 10.04 71.98 0.72 -0.51 16 2 C 0.10 0.70 7.17 86.38 0.62 1.32 16 3 N -0.29 -5.18 3.44 -347.74 -1.20 -6.38 16 4 C -0.02 -0.31 11.49 83.49 0.96 0.65 16 5 C -0.04 -0.88 6.00 41.60 0.25 -0.63 16 6 C -0.04 -0.67 4.62 29.10 0.13 -0.54 16 7 C 0.50 13.53 7.62 87.66 0.67 14.19 16 8 O -0.58 -23.13 15.04 -3.04 -0.05 -23.17 16 9 N -0.61 -14.12 2.19 -818.04 -1.79 -15.91 16 10 C 0.10 1.17 6.00 86.38 0.52 1.68 16 11 C -0.16 -2.43 5.79 30.31 0.18 -2.25 16 12 C 0.06 1.65 6.37 71.50 0.46 2.11 16 13 O -0.40 -15.26 9.18 -117.87 -1.08 -16.34 16 14 C 0.11 4.23 2.73 31.20 0.09 4.31 16 15 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 16 C 0.16 7.67 5.95 86.38 0.51 8.19 16 17 N -0.74 -43.40 5.49 -343.46 -1.88 -45.28 16 18 C -0.25 -15.35 9.99 84.03 0.84 -14.51 16 19 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 20 C -0.08 -5.07 5.50 84.86 0.47 -4.60 16 21 N -0.97 -64.64 13.06 21.65 0.28 -64.36 16 22 Si 0.98 49.52 29.55 68.60 2.03 51.54 16 23 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 24 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 26 C 0.10 2.98 4.86 87.24 0.42 3.40 16 27 N -0.30 -10.31 11.84 -48.60 -0.58 -10.88 16 28 N -0.13 -3.99 12.92 37.02 0.48 -3.51 16 29 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.64 8.12 -2.38 -0.02 0.62 16 32 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.15 -0.33 8.07 -2.38 -0.02 -0.35 16 34 H 0.25 0.18 8.06 -2.91 -0.02 0.16 16 35 H 0.16 0.64 8.02 -2.39 -0.02 0.62 16 36 H 0.13 1.56 7.41 -2.39 -0.02 1.55 16 37 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.12 0.61 5.88 -2.39 -0.01 0.60 16 39 H 0.07 1.33 8.01 -2.39 -0.02 1.31 16 40 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.04 1.10 7.40 -2.39 -0.02 1.09 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.37 23.59 7.53 -92.71 -0.70 22.89 16 46 H 0.25 16.02 8.31 -92.71 -0.77 15.25 16 47 H 0.10 2.66 8.11 -2.39 -0.02 2.64 16 48 H 0.07 2.49 7.27 -2.39 -0.02 2.48 16 Total: -1.00 -101.90 391.46 3.31 -98.59 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.27 Total: 22.87 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.83 Total: 12.83 kcal Atomic # 7 Polarization: -141.64 SS G_CDS: -4.69 Total: -146.33 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.13 Total: -39.51 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.03 Total: 51.54 kcal Total: -101.90 3.31 -98.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201041330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.693 kcal (2) G-P(sol) polarization free energy of solvation -101.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds