Wall clock time and date at job start Tue Mar 31 2020 20:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47020 * 2 1 4 4 N 1.28516 * 124.44419 * 90.02383 * 3 2 1 5 5 C 1.31136 * 109.05841 * 179.97438 * 4 3 2 6 6 C 1.50702 * 127.11105 * 180.02562 * 5 4 3 7 7 C 1.40921 * 105.77482 * 359.97438 * 5 4 3 8 8 C 1.47805 * 127.23391 * 179.97438 * 7 5 4 9 9 O 1.21553 * 119.99881 * 5.91416 * 8 7 5 10 10 N 1.34773 * 119.99530 * 185.91889 * 8 7 5 11 11 C 1.47510 * 118.75404 * 176.56023 * 10 8 7 12 12 C 1.53575 * 111.02877 * 138.34237 * 11 10 8 13 13 C 1.51530 * 109.58128 * 320.02387 * 12 11 10 14 14 O 1.42157 * 108.75461 * 91.40159 * 13 12 11 15 15 C 1.38012 * 119.44036 * 272.76861 * 14 13 12 16 16 H 1.09004 * 109.46862 * 303.42824 * 15 14 13 17 17 C 1.52995 * 109.47150 * 183.42888 * 15 14 13 18 18 N 1.46503 * 109.46767 * 64.98994 * 17 15 14 19 19 C 1.36939 * 119.99599 * 179.72425 * 18 17 15 20 20 H 1.08003 * 120.00204 * 0.27576 * 19 18 17 21 21 C 1.38815 * 119.99593 * 180.27661 * 19 18 17 22 22 N 1.31614 * 120.00348 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99588 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47367 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47026 * 119.99992 * 23 21 19 26 26 H 1.48504 * 109.46987 * 239.99813 * 23 21 19 27 27 C 1.45125 * 118.76242 * 356.53388 * 10 8 7 28 28 N 1.28593 * 124.44296 * 270.28554 * 3 2 1 29 29 H 1.09001 * 109.46992 * 60.00299 * 1 2 3 30 30 H 1.09010 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47472 * 300.00184 * 1 2 3 32 32 H 1.08996 * 109.46966 * 239.99668 * 2 1 3 33 33 H 1.08998 * 109.46523 * 119.99918 * 2 1 3 34 34 H 1.09003 * 109.46534 * 269.96972 * 6 5 4 35 35 H 1.09006 * 109.46941 * 29.96399 * 6 5 4 36 36 H 1.09000 * 109.47161 * 149.97099 * 6 5 4 37 37 H 1.08997 * 109.16954 * 258.74433 * 11 10 8 38 38 H 1.09002 * 109.17072 * 17.95113 * 11 10 8 39 39 H 1.09000 * 109.45342 * 80.05883 * 12 11 10 40 40 H 1.09005 * 109.45317 * 199.98968 * 12 11 10 41 41 H 1.08999 * 109.59103 * 211.18104 * 13 12 11 42 42 H 1.09002 * 109.59431 * 331.61698 * 13 12 11 43 43 H 1.08996 * 109.47319 * 304.99109 * 17 15 14 44 44 H 1.08999 * 109.47382 * 184.98559 * 17 15 14 45 45 H 0.96998 * 120.00286 * 0.02562 * 18 17 15 46 46 H 0.97001 * 120.00225 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.45688 * 149.28500 * 27 10 8 48 48 H 1.09000 * 109.44547 * 29.32588 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 1.0598 5 6 2.6828 3.2583 0.7119 6 6 3.0824 4.3851 1.6294 7 6 2.6864 3.2672 -0.6973 8 6 3.0806 4.3824 -1.5836 9 8 3.5540 5.3969 -1.1100 10 7 2.9152 4.2743 -2.9167 11 6 3.2460 5.4320 -3.7690 12 6 3.9818 4.9872 -5.0414 13 6 4.9673 3.8879 -4.7001 14 8 4.3220 2.6309 -4.8563 15 6 3.6117 2.0972 -3.8001 16 1 4.2637 2.0102 -2.9309 17 6 3.0882 0.7122 -4.1856 18 7 4.2183 -0.1970 -4.3919 19 6 3.9923 -1.5018 -4.7407 20 1 2.9813 -1.8594 -4.8681 21 6 5.0630 -2.3647 -4.9305 22 7 6.2951 -1.9290 -4.7747 23 14 4.7548 -4.1445 -5.4070 24 1 3.2930 -4.3813 -5.5178 25 1 5.4029 -4.4266 -6.7130 26 1 5.3237 -5.0406 -4.3683 27 6 2.4189 3.0233 -3.4597 28 7 2.2557 2.0687 -1.0605 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.2100 5.0000 1.8507 35 1 3.4821 3.9743 2.5566 36 1 3.8439 4.9959 1.1445 37 1 2.3259 5.9451 -4.0485 38 1 3.8817 6.1183 -3.2095 39 1 3.2591 4.6143 -5.7672 40 1 4.5177 5.8360 -5.4664 41 1 5.8246 3.9443 -5.3709 42 1 5.2998 4.0024 -3.6684 43 1 2.5086 0.7861 -5.1058 44 1 2.4540 0.3281 -3.3866 45 1 5.1263 0.1241 -4.2771 46 1 7.0432 -2.5320 -4.9077 47 1 1.8442 3.2226 -4.3641 48 1 1.7797 2.5363 -2.7233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202237095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:49 Heat of formation + Delta-G solvation = 59.937426 kcal Electronic energy + Delta-G solvation = -31316.454415 eV Core-core repulsion = 27217.581035 eV Total energy + Delta-G solvation = -4098.873380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.72307 -40.37844 -38.45341 -35.44650 -35.14607 -34.79300 -33.42319 -32.60513 -31.43490 -30.90655 -28.76113 -28.09804 -26.75771 -25.60436 -24.53290 -22.92573 -22.48576 -21.31604 -21.21426 -20.90550 -19.52909 -17.45038 -17.19482 -17.09515 -16.79248 -16.38258 -16.30446 -15.57064 -15.00755 -14.70546 -14.59071 -14.27443 -14.18906 -13.69324 -13.50586 -13.38773 -13.16851 -13.03771 -12.92470 -12.65435 -12.58763 -12.32793 -12.26958 -12.09571 -11.80689 -11.63302 -11.52918 -11.24765 -10.94289 -10.82829 -10.74752 -10.54244 -10.39089 -10.21619 -10.05071 -9.89959 -9.70679 -9.35830 -9.24893 -8.85951 -8.49449 -6.86619 -5.72179 -3.00379 1.27241 1.88482 2.07093 2.85642 3.16942 3.43661 3.48655 3.51611 3.80790 4.03158 4.43898 4.60837 4.63380 4.71377 4.71718 4.82828 4.91463 4.99758 5.13514 5.23734 5.30092 5.35480 5.38757 5.42732 5.48477 5.55974 5.58500 5.60503 5.67085 5.69233 5.73497 5.76745 5.88570 5.90457 6.01941 6.09023 6.17178 6.23460 6.32745 6.46011 6.63552 6.68580 6.80514 7.21498 7.71152 7.95890 8.06319 8.19040 8.45887 9.57351 10.16889 10.52396 11.50768 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.004479 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.692693 B = 6250.401866 C = 8330.245534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.127 3.873 3 N -0.134 5.134 4 N -0.292 5.292 5 C 0.058 3.942 6 C -0.067 4.067 7 C -0.055 4.055 8 C 0.606 3.394 9 O -0.533 6.533 10 N -0.594 5.594 11 C 0.111 3.889 12 C -0.165 4.165 13 C 0.073 3.927 14 O -0.371 6.371 15 C 0.096 3.904 16 H 0.046 0.954 17 C 0.171 3.829 18 N -0.726 5.726 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.057 3.943 28 N -0.232 5.232 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.025 0.975 44 H 0.034 0.966 45 H 0.386 0.614 46 H 0.254 0.746 47 H 0.082 0.918 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.977 13.378 9.021 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.036 5.036 4 N -0.133 5.133 5 C -0.106 4.106 6 C -0.126 4.126 7 C -0.216 4.216 8 C 0.392 3.608 9 O -0.409 6.409 10 N -0.326 5.326 11 C -0.010 4.010 12 C -0.203 4.203 13 C -0.004 4.004 14 O -0.289 6.289 15 C 0.036 3.964 16 H 0.064 0.936 17 C 0.043 3.957 18 N -0.370 5.370 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.220 1.220 27 C -0.067 4.067 28 N -0.080 5.080 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.052 0.948 45 H 0.220 0.780 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.271 12.396 9.034 19.035 hybrid contribution 0.429 -0.109 -0.139 0.464 sum -10.842 12.287 8.895 18.645 Atomic orbital electron populations 1.22175 0.92932 1.04175 1.03401 1.22233 0.96049 0.73866 1.07008 1.48326 1.42834 1.13293 0.99191 1.73920 1.18667 1.05024 1.15674 1.23187 1.00977 0.93965 0.92461 1.20209 1.02606 0.92860 0.96925 1.22805 1.10682 0.93932 0.94220 1.16856 0.77900 0.84574 0.81463 1.90734 1.45217 1.29839 1.75074 1.47749 1.64334 1.14922 1.05558 1.21881 1.00289 0.87298 0.91548 1.22494 1.00156 1.00214 0.97433 1.22120 0.94364 0.82927 1.00956 1.86420 1.67667 1.35179 1.39594 1.22183 0.91275 0.93352 0.89597 0.93645 1.20553 0.91652 0.85722 0.97816 1.42256 1.03660 1.07466 1.83659 1.19251 0.92593 0.86243 1.38666 0.91188 1.24727 0.95227 0.98177 1.02855 1.69685 0.97324 1.34716 1.56265 0.86156 0.77185 0.85275 0.77798 1.20581 1.21893 1.22005 1.23149 0.98605 0.83680 1.01287 1.74545 1.14604 1.03991 1.14821 0.91304 0.89266 0.91666 0.86072 0.87054 0.90394 0.90711 0.88665 0.91501 0.88882 0.90086 0.89641 0.89280 0.93443 0.95702 0.94810 0.78022 0.93643 0.90000 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.13 1.29 7.24 -4.04 -0.03 1.26 16 3 N -0.13 -1.82 3.94 -10.62 -0.04 -1.86 16 4 N -0.29 -4.11 12.01 33.92 0.41 -3.70 16 5 C 0.06 0.81 7.39 -81.87 -0.61 0.21 16 6 C -0.07 -0.74 10.05 36.01 0.36 -0.38 16 7 C -0.05 -0.83 6.85 -82.68 -0.57 -1.40 16 8 C 0.61 9.27 7.64 -12.35 -0.09 9.18 16 9 O -0.53 -8.66 14.46 5.32 0.08 -8.58 16 10 N -0.59 -8.26 2.19 -173.60 -0.38 -8.64 16 11 C 0.11 1.29 6.18 -3.19 -0.02 1.27 16 12 C -0.16 -1.84 5.78 -27.18 -0.16 -2.00 16 13 C 0.07 1.06 6.37 36.41 0.23 1.29 16 14 O -0.37 -6.82 9.38 -26.53 -0.25 -7.07 16 15 C 0.10 1.71 2.34 -25.78 -0.06 1.65 16 16 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 17 C 0.17 3.49 5.92 -4.04 -0.02 3.47 16 18 N -0.73 -18.81 5.54 -59.91 -0.33 -19.14 16 19 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 23 Si 0.90 22.30 29.55 -169.99 -5.02 17.28 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 C 0.06 0.83 4.47 -3.83 -0.02 0.81 16 28 N -0.23 -3.44 8.22 33.42 0.27 -3.17 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.12 6.68 -51.93 -0.35 0.78 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.10 6.96 -51.93 -0.36 0.74 16 39 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.73 7.40 -51.93 -0.38 0.34 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.39 10.87 7.65 -40.82 -0.31 10.56 16 46 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 48 H 0.12 1.74 4.65 -53.95 -0.25 1.49 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -34.30 387.09 -7.09 -41.39 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.53 Total: 8.37 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.85 Total: 7.15 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 0.65 Total: -64.37 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.17 Total: -15.65 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.30 -7.09 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202237095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.330 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds