Wall clock time and date at job start Tue Mar 31 2020 20:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47020 * 2 1 4 4 N 1.28516 * 124.44419 * 90.02383 * 3 2 1 5 5 C 1.31136 * 109.05841 * 179.97438 * 4 3 2 6 6 C 1.50702 * 127.11105 * 180.02562 * 5 4 3 7 7 C 1.40921 * 105.77482 * 359.97438 * 5 4 3 8 8 C 1.47805 * 127.23391 * 179.97438 * 7 5 4 9 9 O 1.21553 * 119.99881 * 5.91416 * 8 7 5 10 10 N 1.34773 * 119.99530 * 185.91889 * 8 7 5 11 11 C 1.47510 * 118.75404 * 176.56023 * 10 8 7 12 12 C 1.53575 * 111.02877 * 138.34237 * 11 10 8 13 13 C 1.51530 * 109.58128 * 320.02387 * 12 11 10 14 14 O 1.42157 * 108.75461 * 91.40159 * 13 12 11 15 15 C 1.38012 * 119.44036 * 272.76861 * 14 13 12 16 16 H 1.09004 * 109.46862 * 303.42824 * 15 14 13 17 17 C 1.52995 * 109.47150 * 183.42888 * 15 14 13 18 18 N 1.46503 * 109.46767 * 64.98994 * 17 15 14 19 19 C 1.36939 * 119.99599 * 179.72425 * 18 17 15 20 20 H 1.08003 * 120.00204 * 0.27576 * 19 18 17 21 21 C 1.38815 * 119.99593 * 180.27661 * 19 18 17 22 22 N 1.31614 * 120.00348 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99588 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47367 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47026 * 119.99992 * 23 21 19 26 26 H 1.48504 * 109.46987 * 239.99813 * 23 21 19 27 27 C 1.45125 * 118.76242 * 356.53388 * 10 8 7 28 28 N 1.28593 * 124.44296 * 270.28554 * 3 2 1 29 29 H 1.09001 * 109.46992 * 60.00299 * 1 2 3 30 30 H 1.09010 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47472 * 300.00184 * 1 2 3 32 32 H 1.08996 * 109.46966 * 239.99668 * 2 1 3 33 33 H 1.08998 * 109.46523 * 119.99918 * 2 1 3 34 34 H 1.09003 * 109.46534 * 269.96972 * 6 5 4 35 35 H 1.09006 * 109.46941 * 29.96399 * 6 5 4 36 36 H 1.09000 * 109.47161 * 149.97099 * 6 5 4 37 37 H 1.08997 * 109.16954 * 258.74433 * 11 10 8 38 38 H 1.09002 * 109.17072 * 17.95113 * 11 10 8 39 39 H 1.09000 * 109.45342 * 80.05883 * 12 11 10 40 40 H 1.09005 * 109.45317 * 199.98968 * 12 11 10 41 41 H 1.08999 * 109.59103 * 211.18104 * 13 12 11 42 42 H 1.09002 * 109.59431 * 331.61698 * 13 12 11 43 43 H 1.08996 * 109.47319 * 304.99109 * 17 15 14 44 44 H 1.08999 * 109.47382 * 184.98559 * 17 15 14 45 45 H 0.96998 * 120.00286 * 0.02562 * 18 17 15 46 46 H 0.97001 * 120.00225 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.45688 * 149.28500 * 27 10 8 48 48 H 1.09000 * 109.44547 * 29.32588 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 1.0598 5 6 2.6828 3.2583 0.7119 6 6 3.0824 4.3851 1.6294 7 6 2.6864 3.2672 -0.6973 8 6 3.0806 4.3824 -1.5836 9 8 3.5540 5.3969 -1.1100 10 7 2.9152 4.2743 -2.9167 11 6 3.2460 5.4320 -3.7690 12 6 3.9818 4.9872 -5.0414 13 6 4.9673 3.8879 -4.7001 14 8 4.3220 2.6309 -4.8563 15 6 3.6117 2.0972 -3.8001 16 1 4.2637 2.0102 -2.9309 17 6 3.0882 0.7122 -4.1856 18 7 4.2183 -0.1970 -4.3919 19 6 3.9923 -1.5018 -4.7407 20 1 2.9813 -1.8594 -4.8681 21 6 5.0630 -2.3647 -4.9305 22 7 6.2951 -1.9290 -4.7747 23 14 4.7548 -4.1445 -5.4070 24 1 3.2930 -4.3813 -5.5178 25 1 5.4029 -4.4266 -6.7130 26 1 5.3237 -5.0406 -4.3683 27 6 2.4189 3.0233 -3.4597 28 7 2.2557 2.0687 -1.0605 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.2100 5.0000 1.8507 35 1 3.4821 3.9743 2.5566 36 1 3.8439 4.9959 1.1445 37 1 2.3259 5.9451 -4.0485 38 1 3.8817 6.1183 -3.2095 39 1 3.2591 4.6143 -5.7672 40 1 4.5177 5.8360 -5.4664 41 1 5.8246 3.9443 -5.3709 42 1 5.2998 4.0024 -3.6684 43 1 2.5086 0.7861 -5.1058 44 1 2.4540 0.3281 -3.3866 45 1 5.1263 0.1241 -4.2771 46 1 7.0432 -2.5320 -4.9077 47 1 1.8442 3.2226 -4.3641 48 1 1.7797 2.5363 -2.7233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202237095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:48 Heat of formation + Delta-G solvation = 36.427793 kcal Electronic energy + Delta-G solvation = -31317.473869 eV Core-core repulsion = 27217.581035 eV Total energy + Delta-G solvation = -4099.892834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.78675 -41.56533 -39.74020 -36.76491 -36.39493 -36.08673 -34.76218 -33.82833 -32.80019 -32.23721 -30.26909 -29.04674 -27.89778 -27.04478 -25.82063 -24.45328 -23.65393 -22.60462 -22.27713 -22.16081 -20.63747 -19.23173 -18.47341 -18.28449 -17.99124 -17.51785 -17.48263 -16.82810 -16.62199 -15.97023 -15.91836 -15.42783 -15.15832 -15.12816 -14.77433 -14.71346 -14.50427 -14.27274 -13.94798 -13.84925 -13.69148 -13.46462 -13.32981 -13.20137 -13.02587 -12.81057 -12.74202 -12.62318 -12.34916 -12.32183 -12.08977 -11.92113 -11.80349 -11.67312 -11.55864 -11.36274 -11.12891 -10.95902 -10.59634 -10.29731 -9.68002 -8.97620 -7.91183 -5.20457 0.14906 0.81763 1.12912 1.48533 1.50274 1.60157 1.78894 2.01987 2.57972 2.72777 2.75478 3.38926 3.43530 3.66298 3.73051 3.83624 3.90621 3.92782 4.01360 4.07149 4.12934 4.22375 4.31950 4.37620 4.40196 4.44150 4.53412 4.56840 4.68293 4.72672 4.74370 4.78560 4.80028 4.86065 4.93834 4.97257 5.09187 5.11842 5.14036 5.21614 5.28566 5.41287 5.51556 5.64351 6.06705 6.28830 6.72903 6.83038 7.09621 7.35329 8.10177 8.34901 9.33216 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.004479 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.692693 B = 6250.401866 C = 8330.245534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 N -0.132 5.132 4 N -0.298 5.298 5 C 0.049 3.951 6 C -0.064 4.064 7 C -0.077 4.077 8 C 0.602 3.398 9 O -0.547 6.547 10 N -0.592 5.592 11 C 0.108 3.892 12 C -0.152 4.152 13 C 0.067 3.933 14 O -0.398 6.398 15 C 0.111 3.889 16 H 0.015 0.985 17 C 0.170 3.830 18 N -0.740 5.740 19 C -0.238 4.238 20 H 0.083 0.917 21 C -0.078 4.078 22 N -0.974 5.974 23 Si 0.974 3.026 24 H -0.260 1.260 25 H -0.297 1.297 26 H -0.294 1.294 27 C 0.072 3.928 28 N -0.242 5.242 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.033 0.967 43 H 0.028 0.972 44 H 0.048 0.952 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.100 0.900 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.905 13.705 8.926 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.001 4.001 3 N -0.036 5.036 4 N -0.140 5.140 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.238 4.238 8 C 0.389 3.611 9 O -0.424 6.424 10 N -0.323 5.323 11 C -0.013 4.013 12 C -0.190 4.190 13 C -0.009 4.009 14 O -0.317 6.317 15 C 0.051 3.949 16 H 0.033 0.967 17 C 0.044 3.956 18 N -0.382 5.382 19 C -0.369 4.369 20 H 0.100 0.900 21 C -0.270 4.270 22 N -0.625 5.625 23 Si 0.803 3.197 24 H -0.184 1.184 25 H -0.225 1.225 26 H -0.222 1.222 27 C -0.053 4.053 28 N -0.091 5.091 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.114 0.886 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.066 0.934 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.118 0.882 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.254 12.752 8.935 20.448 hybrid contribution 1.034 -0.185 -0.093 1.054 sum -12.220 12.566 8.842 19.632 Atomic orbital electron populations 1.22134 0.90978 1.05595 1.02967 1.22578 0.97643 0.72511 1.07397 1.48747 1.42017 1.13977 0.98822 1.73910 1.19090 1.05142 1.15849 1.23674 1.00534 0.94588 0.92582 1.20275 1.03032 0.92099 0.96803 1.22953 1.11723 0.94206 0.94919 1.16965 0.77768 0.84478 0.81939 1.90715 1.45960 1.30361 1.75396 1.47817 1.63890 1.15199 1.05436 1.22095 1.01515 0.86478 0.91173 1.22411 0.99427 0.99855 0.97283 1.22333 0.95533 0.82605 1.00408 1.86351 1.68286 1.37215 1.39845 1.21874 0.91941 0.92935 0.88161 0.96662 1.20698 0.90292 0.86494 0.98160 1.42470 1.04272 1.07824 1.83657 1.19712 0.93060 0.87133 1.37012 0.89960 1.25589 0.95002 1.02580 1.03801 1.69865 0.98232 1.36096 1.58306 0.85060 0.78013 0.79903 0.76714 1.18380 1.22459 1.22168 1.22922 0.96918 0.83408 1.02045 1.74474 1.14991 1.04145 1.15517 0.92124 0.86869 0.91605 0.86935 0.85406 0.88737 0.89219 0.89612 0.88997 0.89118 0.89880 0.86506 0.88566 0.94892 0.95392 0.93406 0.79886 0.94230 0.88221 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.24 71.98 0.74 -1.54 16 2 C 0.12 2.26 7.24 86.38 0.63 2.89 16 3 N -0.13 -3.53 3.94 -187.50 -0.74 -4.27 16 4 N -0.30 -8.24 12.01 -46.58 -0.56 -8.80 16 5 C 0.05 1.37 7.39 43.32 0.32 1.69 16 6 C -0.06 -1.35 10.05 71.24 0.72 -0.64 16 7 C -0.08 -2.36 6.85 42.24 0.29 -2.07 16 8 C 0.60 18.26 7.64 86.78 0.66 18.93 16 9 O -0.55 -17.64 14.46 -3.88 -0.06 -17.69 16 10 N -0.59 -15.91 2.19 -821.42 -1.80 -17.71 16 11 C 0.11 2.27 6.18 86.38 0.53 2.81 16 12 C -0.15 -3.06 5.78 30.31 0.18 -2.89 16 13 C 0.07 1.93 6.37 71.50 0.46 2.38 16 14 O -0.40 -14.69 9.38 -117.83 -1.11 -15.80 16 15 C 0.11 3.99 2.34 31.21 0.07 4.06 16 16 H 0.02 0.65 8.13 -2.39 -0.02 0.63 16 17 C 0.17 6.96 5.92 86.38 0.51 7.47 16 18 N -0.74 -38.91 5.54 -343.45 -1.90 -40.81 16 19 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 22 N -0.97 -61.12 13.06 21.65 0.28 -60.83 16 23 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 C 0.07 2.01 4.47 87.25 0.39 2.40 16 28 N -0.24 -7.18 8.22 -48.17 -0.40 -7.58 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.09 2.00 6.68 -2.39 -0.02 1.99 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 2.00 6.96 -2.39 -0.02 1.98 16 39 H 0.08 1.70 8.01 -2.39 -0.02 1.68 16 40 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.10 2.56 8.14 -2.39 -0.02 2.55 16 42 H 0.03 1.03 7.40 -2.39 -0.02 1.01 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.37 21.55 7.65 -92.71 -0.71 20.84 16 46 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 47 H 0.10 2.45 8.11 -2.39 -0.02 2.43 16 48 H 0.12 3.43 4.65 -5.00 -0.02 3.41 16 Total: -1.00 -74.64 387.09 2.80 -71.83 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.25 Total: 34.66 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.80 Total: 19.05 kcal Atomic # 7 Polarization: -134.89 SS G_CDS: -5.11 Total: -140.01 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.16 Total: -33.49 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -74.64 2.80 -71.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202237095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.262 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds