Wall clock time and date at job start Tue Mar 31 2020 20:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47015 * 2 1 4 4 N 1.28518 * 124.44569 * 269.97667 * 3 2 1 5 5 C 1.31133 * 109.05795 * 179.73819 * 4 3 2 6 6 C 1.50696 * 127.11121 * 180.29680 * 5 4 3 7 7 C 1.40920 * 105.77357 * 0.42729 * 5 4 3 8 8 C 1.47807 * 127.23265 * 179.83993 * 7 5 4 9 9 O 1.21553 * 119.99985 * 354.23104 * 8 7 5 10 10 N 1.34773 * 119.99716 * 174.22692 * 8 7 5 11 11 C 1.47462 * 118.75797 * 174.32325 * 10 8 7 12 12 C 1.53572 * 111.06118 * 221.63054 * 11 10 8 13 13 C 1.51535 * 109.55955 * 39.97957 * 12 11 10 14 14 O 1.42155 * 108.75456 * 268.61072 * 13 12 11 15 15 C 1.38014 * 119.44052 * 87.23934 * 14 13 12 16 16 H 1.08992 * 109.46951 * 56.56742 * 15 14 13 17 17 C 1.52999 * 109.46852 * 176.56703 * 15 14 13 18 18 N 1.46501 * 109.47017 * 299.99422 * 17 15 14 19 19 C 1.36939 * 119.99568 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00312 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99633 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99723 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00152 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46663 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47292 * 119.99830 * 23 21 19 26 26 H 1.48498 * 109.46983 * 239.99950 * 23 21 19 27 27 C 1.45120 * 118.76144 * 354.34158 * 10 8 7 28 28 N 1.28588 * 124.44134 * 90.00251 * 3 2 1 29 29 H 1.08997 * 109.47100 * 60.00194 * 1 2 3 30 30 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47404 * 300.00164 * 1 2 3 32 32 H 1.09003 * 109.46923 * 240.00460 * 2 1 3 33 33 H 1.08997 * 109.47100 * 119.99806 * 2 1 3 34 34 H 1.09008 * 109.46587 * 270.16181 * 6 5 4 35 35 H 1.09000 * 109.47452 * 30.16018 * 6 5 4 36 36 H 1.08995 * 109.47445 * 150.16178 * 6 5 4 37 37 H 1.09003 * 109.13730 * 101.23340 * 11 10 8 38 38 H 1.09001 * 109.16409 * 342.04508 * 11 10 8 39 39 H 1.09003 * 109.45252 * 279.96245 * 12 11 10 40 40 H 1.08992 * 109.45292 * 160.00542 * 12 11 10 41 41 H 1.08992 * 109.59380 * 28.39288 * 13 12 11 42 42 H 1.09002 * 109.58929 * 148.68754 * 13 12 11 43 43 H 1.09000 * 109.47574 * 60.00211 * 17 15 14 44 44 H 1.08999 * 109.46580 * 180.02562 * 17 15 14 45 45 H 0.96995 * 119.99915 * 0.02562 * 18 17 15 46 46 H 0.96999 * 119.99606 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.45654 * 330.69205 * 27 10 8 48 48 H 1.08998 * 109.46104 * 210.74185 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2611 2.0665 -1.0598 5 6 2.6770 3.2604 -0.7119 6 6 3.0680 4.3902 -1.6293 7 6 2.6857 3.2675 0.6973 8 6 3.0802 4.3826 1.5836 9 8 3.5465 5.4000 1.1095 10 7 2.9227 4.2712 2.9175 11 6 3.4405 5.3452 3.7851 12 6 4.1207 4.7659 5.0342 13 6 4.9209 3.5371 4.6522 14 8 4.0938 2.3900 4.7966 15 6 3.2931 1.9942 3.7445 16 1 3.9096 1.8282 2.8612 17 6 2.5705 0.6970 4.1133 18 7 3.5574 -0.3482 4.3959 19 6 3.1421 -1.6042 4.7498 20 1 2.0872 -1.8241 4.8211 21 6 4.0772 -2.5945 5.0181 22 7 5.3629 -2.3260 4.9327 23 14 3.5109 -4.3080 5.5002 24 1 2.0266 -4.3500 5.5248 25 1 4.0182 -5.2934 4.5119 26 1 4.0374 -4.6425 6.8478 27 6 2.2502 3.0987 3.4457 28 7 2.2608 2.0669 1.0605 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 4.1324 4.3233 -1.8548 35 1 2.4956 4.3218 -2.5544 36 1 2.8589 5.3427 -1.1423 37 1 2.6140 5.9861 4.0924 38 1 4.1641 5.9389 3.2265 39 1 3.3616 4.4915 5.7667 40 1 4.7868 5.5136 5.4645 41 1 5.2498 3.6224 3.6166 42 1 5.7891 3.4487 5.3053 43 1 1.9539 0.8630 4.9967 44 1 1.9385 0.3843 3.2822 45 1 4.5049 -0.1506 4.3323 46 1 6.0163 -3.0180 5.1198 47 1 1.5319 2.7312 2.7129 48 1 1.7277 3.3631 4.3650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202237096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:52 Heat of formation + Delta-G solvation = 59.031377 kcal Electronic energy + Delta-G solvation = -31461.808190 eV Core-core repulsion = 27362.895521 eV Total energy + Delta-G solvation = -4098.912669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.69835 -40.37556 -38.45478 -35.43478 -35.10958 -34.78168 -33.40183 -32.58655 -31.39572 -30.90549 -28.75773 -28.08499 -26.75380 -25.58706 -24.51765 -22.90398 -22.48979 -21.30222 -21.13749 -20.89339 -19.49478 -17.42619 -17.24300 -17.07489 -16.76201 -16.37967 -16.26364 -15.58925 -14.97782 -14.68587 -14.55419 -14.28580 -14.12587 -13.68482 -13.48413 -13.39568 -13.16534 -13.03838 -12.87874 -12.63667 -12.56315 -12.28837 -12.25723 -12.07183 -11.77132 -11.57588 -11.48807 -11.24187 -10.94295 -10.83221 -10.76507 -10.63226 -10.40477 -10.18717 -10.06159 -9.89135 -9.70218 -9.33947 -9.22788 -8.85588 -8.50419 -6.85960 -5.72164 -3.00142 1.29850 1.90327 2.11027 2.85900 3.17185 3.43316 3.48555 3.51399 3.83035 4.03943 4.45455 4.61055 4.69157 4.73074 4.75503 4.83103 4.91915 5.05830 5.12388 5.24108 5.30824 5.39889 5.41695 5.47280 5.48820 5.57619 5.58978 5.60292 5.68797 5.69040 5.72514 5.82151 5.89956 5.91643 6.03157 6.09516 6.17956 6.21081 6.33809 6.46516 6.60047 6.69569 6.81799 7.21402 7.71129 7.96126 8.07889 8.21131 8.46139 9.57639 10.17743 10.53504 11.50707 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010121 B = 0.004528 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.834382 B = 6181.606208 C = 8254.246300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.127 3.873 3 N -0.132 5.132 4 N -0.294 5.294 5 C 0.057 3.943 6 C -0.064 4.064 7 C -0.060 4.060 8 C 0.606 3.394 9 O -0.533 6.533 10 N -0.595 5.595 11 C 0.113 3.887 12 C -0.165 4.165 13 C 0.073 3.927 14 O -0.370 6.370 15 C 0.097 3.903 16 H 0.049 0.951 17 C 0.172 3.828 18 N -0.725 5.725 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.070 3.930 28 N -0.228 5.228 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.023 0.977 44 H 0.034 0.966 45 H 0.387 0.613 46 H 0.253 0.747 47 H 0.105 0.895 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 14.168 -9.334 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 N -0.035 5.035 4 N -0.135 5.135 5 C -0.107 4.107 6 C -0.123 4.123 7 C -0.221 4.221 8 C 0.392 3.608 9 O -0.408 6.408 10 N -0.327 5.327 11 C -0.008 4.008 12 C -0.204 4.204 13 C -0.003 4.003 14 O -0.288 6.288 15 C 0.037 3.963 16 H 0.067 0.933 17 C 0.044 3.956 18 N -0.370 5.370 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.054 4.054 28 N -0.076 5.076 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.221 0.779 46 H 0.063 0.937 47 H 0.123 0.877 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.182 13.199 -9.349 18.127 hybrid contribution 0.332 -0.127 0.153 0.387 sum -7.850 13.073 -9.196 17.807 Atomic orbital electron populations 1.22162 0.92892 1.04210 1.03341 1.22258 0.96120 0.73749 1.07059 1.48302 1.42673 1.13431 0.99110 1.73919 1.18903 1.04890 1.15740 1.23187 1.01113 0.93874 0.92492 1.20165 1.01957 0.93496 0.96699 1.22793 1.11230 0.93954 0.94169 1.16839 0.77934 0.84547 0.81434 1.90742 1.45842 1.29189 1.75032 1.47737 1.57284 1.22326 1.05366 1.21856 0.99002 0.88604 0.91354 1.22507 1.01063 0.99187 0.97599 1.22106 0.92877 0.84598 1.00753 1.86424 1.56527 1.45288 1.40538 1.22172 0.90960 0.93471 0.89705 0.93314 1.20548 0.92122 0.85477 0.97492 1.42239 1.04732 1.07026 1.82953 1.19251 0.92151 0.87077 1.38242 0.91226 1.24723 0.95243 0.98182 1.02834 1.69692 0.99443 1.32858 1.55954 0.86165 0.77556 0.84899 0.77856 1.20598 1.22015 1.21923 1.22860 0.96614 0.85124 1.00812 1.74723 1.13994 1.03862 1.15020 0.91740 0.89241 0.91264 0.87146 0.85869 0.90195 0.90845 0.89060 0.91488 0.89068 0.90034 0.89616 0.93600 0.89277 0.95960 0.94808 0.77944 0.93670 0.87700 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.13 1.37 7.24 -4.04 -0.03 1.34 16 3 N -0.13 -1.83 3.94 -10.61 -0.04 -1.88 16 4 N -0.29 -4.17 12.01 33.92 0.41 -3.76 16 5 C 0.06 0.81 7.39 -81.88 -0.61 0.20 16 6 C -0.06 -0.71 9.95 36.00 0.36 -0.35 16 7 C -0.06 -0.91 6.72 -82.68 -0.56 -1.47 16 8 C 0.61 9.23 7.63 -12.35 -0.09 9.14 16 9 O -0.53 -8.61 14.62 5.32 0.08 -8.54 16 10 N -0.60 -8.25 2.19 -173.64 -0.38 -8.63 16 11 C 0.11 1.31 6.11 -3.22 -0.02 1.29 16 12 C -0.17 -1.85 5.79 -27.18 -0.16 -2.01 16 13 C 0.07 1.06 6.37 36.42 0.23 1.30 16 14 O -0.37 -6.79 9.18 -26.53 -0.24 -7.03 16 15 C 0.10 1.71 2.06 -25.78 -0.05 1.66 16 16 H 0.05 0.96 7.32 -51.93 -0.38 0.58 16 17 C 0.17 3.47 5.95 -4.04 -0.02 3.45 16 18 N -0.73 -18.56 5.49 -59.91 -0.33 -18.89 16 19 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 23 Si 0.90 22.16 29.55 -169.99 -5.02 17.14 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 27 C 0.07 1.01 4.41 -3.83 -0.02 0.99 16 28 N -0.23 -3.43 7.45 33.42 0.25 -3.18 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 0.83 8.14 -51.92 -0.42 0.40 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.03 6.89 -51.93 -0.36 0.67 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.08 7.07 -51.93 -0.37 0.71 16 39 H 0.08 0.95 8.01 -51.93 -0.42 0.54 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.70 7.40 -51.93 -0.38 0.31 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.39 10.79 7.53 -40.82 -0.31 10.48 16 46 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.11 1.51 5.32 -51.93 -0.28 1.23 16 48 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -33.84 385.68 -7.11 -40.95 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.53 Total: 8.34 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -0.83 Total: 7.30 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: 0.63 Total: -63.98 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.17 Total: -15.57 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.84 -7.11 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202237096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.981 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds