Wall clock time and date at job start Tue Mar 31 2020 20:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47015 * 2 1 4 4 N 1.28518 * 124.44569 * 269.97667 * 3 2 1 5 5 C 1.31133 * 109.05795 * 179.73819 * 4 3 2 6 6 C 1.50696 * 127.11121 * 180.29680 * 5 4 3 7 7 C 1.40920 * 105.77357 * 0.42729 * 5 4 3 8 8 C 1.47807 * 127.23265 * 179.83993 * 7 5 4 9 9 O 1.21553 * 119.99985 * 354.23104 * 8 7 5 10 10 N 1.34773 * 119.99716 * 174.22692 * 8 7 5 11 11 C 1.47462 * 118.75797 * 174.32325 * 10 8 7 12 12 C 1.53572 * 111.06118 * 221.63054 * 11 10 8 13 13 C 1.51535 * 109.55955 * 39.97957 * 12 11 10 14 14 O 1.42155 * 108.75456 * 268.61072 * 13 12 11 15 15 C 1.38014 * 119.44052 * 87.23934 * 14 13 12 16 16 H 1.08992 * 109.46951 * 56.56742 * 15 14 13 17 17 C 1.52999 * 109.46852 * 176.56703 * 15 14 13 18 18 N 1.46501 * 109.47017 * 299.99422 * 17 15 14 19 19 C 1.36939 * 119.99568 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00312 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99633 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99723 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00152 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46663 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47292 * 119.99830 * 23 21 19 26 26 H 1.48498 * 109.46983 * 239.99950 * 23 21 19 27 27 C 1.45120 * 118.76144 * 354.34158 * 10 8 7 28 28 N 1.28588 * 124.44134 * 90.00251 * 3 2 1 29 29 H 1.08997 * 109.47100 * 60.00194 * 1 2 3 30 30 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47404 * 300.00164 * 1 2 3 32 32 H 1.09003 * 109.46923 * 240.00460 * 2 1 3 33 33 H 1.08997 * 109.47100 * 119.99806 * 2 1 3 34 34 H 1.09008 * 109.46587 * 270.16181 * 6 5 4 35 35 H 1.09000 * 109.47452 * 30.16018 * 6 5 4 36 36 H 1.08995 * 109.47445 * 150.16178 * 6 5 4 37 37 H 1.09003 * 109.13730 * 101.23340 * 11 10 8 38 38 H 1.09001 * 109.16409 * 342.04508 * 11 10 8 39 39 H 1.09003 * 109.45252 * 279.96245 * 12 11 10 40 40 H 1.08992 * 109.45292 * 160.00542 * 12 11 10 41 41 H 1.08992 * 109.59380 * 28.39288 * 13 12 11 42 42 H 1.09002 * 109.58929 * 148.68754 * 13 12 11 43 43 H 1.09000 * 109.47574 * 60.00211 * 17 15 14 44 44 H 1.08999 * 109.46580 * 180.02562 * 17 15 14 45 45 H 0.96995 * 119.99915 * 0.02562 * 18 17 15 46 46 H 0.96999 * 119.99606 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.45654 * 330.69205 * 27 10 8 48 48 H 1.08998 * 109.46104 * 210.74185 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2611 2.0665 -1.0598 5 6 2.6770 3.2604 -0.7119 6 6 3.0680 4.3902 -1.6293 7 6 2.6857 3.2675 0.6973 8 6 3.0802 4.3826 1.5836 9 8 3.5465 5.4000 1.1095 10 7 2.9227 4.2712 2.9175 11 6 3.4405 5.3452 3.7851 12 6 4.1207 4.7659 5.0342 13 6 4.9209 3.5371 4.6522 14 8 4.0938 2.3900 4.7966 15 6 3.2931 1.9942 3.7445 16 1 3.9096 1.8282 2.8612 17 6 2.5705 0.6970 4.1133 18 7 3.5574 -0.3482 4.3959 19 6 3.1421 -1.6042 4.7498 20 1 2.0872 -1.8241 4.8211 21 6 4.0772 -2.5945 5.0181 22 7 5.3629 -2.3260 4.9327 23 14 3.5109 -4.3080 5.5002 24 1 2.0266 -4.3500 5.5248 25 1 4.0182 -5.2934 4.5119 26 1 4.0374 -4.6425 6.8478 27 6 2.2502 3.0987 3.4457 28 7 2.2608 2.0669 1.0605 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 4.1324 4.3233 -1.8548 35 1 2.4956 4.3218 -2.5544 36 1 2.8589 5.3427 -1.1423 37 1 2.6140 5.9861 4.0924 38 1 4.1641 5.9389 3.2265 39 1 3.3616 4.4915 5.7667 40 1 4.7868 5.5136 5.4645 41 1 5.2498 3.6224 3.6166 42 1 5.7891 3.4487 5.3053 43 1 1.9539 0.8630 4.9967 44 1 1.9385 0.3843 3.2822 45 1 4.5049 -0.1506 4.3323 46 1 6.0163 -3.0180 5.1198 47 1 1.5319 2.7312 2.7129 48 1 1.7277 3.3631 4.3650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202237096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:51 Heat of formation + Delta-G solvation = 36.128016 kcal Electronic energy + Delta-G solvation = -31462.801354 eV Core-core repulsion = 27362.895521 eV Total energy + Delta-G solvation = -4099.905833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.77663 -41.55831 -39.73507 -36.75016 -36.36790 -36.08097 -34.75101 -33.80385 -32.77842 -32.23387 -30.25640 -29.04306 -27.89609 -27.02864 -25.80887 -24.44759 -23.65787 -22.56312 -22.19942 -22.17981 -20.60888 -19.20697 -18.50042 -18.28861 -17.95631 -17.51886 -17.45751 -16.82205 -16.61733 -15.97968 -15.86121 -15.43120 -15.12545 -15.10742 -14.77109 -14.69324 -14.50551 -14.28467 -13.94265 -13.79643 -13.63975 -13.47756 -13.32864 -13.17901 -13.02709 -12.80396 -12.71851 -12.57705 -12.34910 -12.32175 -12.07999 -11.92044 -11.80422 -11.74320 -11.59450 -11.31973 -11.13152 -10.93928 -10.57553 -10.29473 -9.68687 -8.94985 -7.89526 -5.18272 0.16631 0.82632 1.13752 1.49237 1.50962 1.60668 1.79019 2.02063 2.59013 2.74474 2.76900 3.39368 3.45010 3.67385 3.74711 3.84041 3.90820 3.92730 4.01968 4.08149 4.14259 4.23167 4.32106 4.39688 4.42355 4.45259 4.54586 4.57952 4.68229 4.73085 4.73987 4.77435 4.79874 4.84350 4.95314 4.98167 5.10216 5.13222 5.14883 5.23398 5.27223 5.41564 5.53162 5.59940 6.06857 6.30559 6.75596 6.83270 7.10781 7.37410 8.13074 8.37783 9.34766 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010121 B = 0.004528 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.834382 B = 6181.606208 C = 8254.246300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 N -0.132 5.132 4 N -0.300 5.300 5 C 0.050 3.950 6 C -0.061 4.061 7 C -0.081 4.081 8 C 0.603 3.397 9 O -0.546 6.546 10 N -0.593 5.593 11 C 0.110 3.890 12 C -0.152 4.152 13 C 0.068 3.932 14 O -0.398 6.398 15 C 0.112 3.888 16 H 0.023 0.977 17 C 0.172 3.828 18 N -0.738 5.738 19 C -0.236 4.236 20 H 0.082 0.918 21 C -0.077 4.077 22 N -0.973 5.973 23 Si 0.972 3.028 24 H -0.261 1.261 25 H -0.294 1.294 26 H -0.298 1.298 27 C 0.085 3.915 28 N -0.240 5.240 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.033 0.967 42 H 0.095 0.905 43 H 0.025 0.975 44 H 0.048 0.952 45 H 0.371 0.629 46 H 0.248 0.752 47 H 0.106 0.894 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.514 14.799 -9.378 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.000 4.000 3 N -0.036 5.036 4 N -0.141 5.141 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.242 4.242 8 C 0.390 3.610 9 O -0.423 6.423 10 N -0.325 5.325 11 C -0.010 4.010 12 C -0.190 4.190 13 C -0.008 4.008 14 O -0.317 6.317 15 C 0.052 3.948 16 H 0.041 0.959 17 C 0.045 3.955 18 N -0.380 5.380 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.269 4.269 22 N -0.624 5.624 23 Si 0.802 3.198 24 H -0.185 1.185 25 H -0.222 1.222 26 H -0.226 1.226 27 C -0.040 4.040 28 N -0.089 5.089 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.051 0.949 42 H 0.113 0.887 43 H 0.043 0.957 44 H 0.065 0.935 45 H 0.202 0.798 46 H 0.057 0.943 47 H 0.124 0.876 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.885 13.865 -9.393 19.446 hybrid contribution 0.861 -0.294 0.148 0.922 sum -9.024 13.571 -9.245 18.737 Atomic orbital electron populations 1.22122 0.91002 1.05521 1.02980 1.22539 0.97648 0.72572 1.07201 1.48674 1.42031 1.14041 0.98808 1.73909 1.19287 1.05068 1.15855 1.23684 1.00581 0.94471 0.92609 1.20239 1.02566 0.92207 0.96913 1.22962 1.12126 0.94165 0.94898 1.16925 0.77816 0.84421 0.81881 1.90723 1.46575 1.29645 1.75327 1.47803 1.56953 1.22446 1.05262 1.22062 0.99845 0.88131 0.90989 1.22421 1.01072 0.98128 0.97401 1.22311 0.93299 0.84920 1.00292 1.86354 1.57282 1.47225 1.40856 1.21864 0.91159 0.93477 0.88326 0.95946 1.20686 0.91465 0.85612 0.97739 1.42438 1.04857 1.07774 1.82961 1.19698 0.92655 0.87879 1.36515 0.90059 1.25559 0.95308 1.02197 1.03835 1.69868 1.00689 1.33870 1.57983 0.85083 0.78106 0.79942 0.76707 1.18466 1.22169 1.22579 1.22632 0.95417 0.84395 1.01540 1.74667 1.14425 1.04087 1.15714 0.91413 0.87047 0.92198 0.85391 0.87313 0.89622 0.88839 0.89336 0.89123 0.89216 0.89940 0.86506 0.94883 0.88666 0.95740 0.93458 0.79777 0.94284 0.87592 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.24 71.98 0.74 -1.79 16 2 C 0.12 2.48 7.24 86.38 0.63 3.10 16 3 N -0.13 -3.61 3.94 -187.48 -0.74 -4.35 16 4 N -0.30 -8.35 12.01 -46.59 -0.56 -8.91 16 5 C 0.05 1.39 7.39 43.32 0.32 1.71 16 6 C -0.06 -1.28 9.95 71.23 0.71 -0.57 16 7 C -0.08 -2.46 6.72 42.24 0.28 -2.17 16 8 C 0.60 18.10 7.63 86.78 0.66 18.76 16 9 O -0.55 -17.33 14.62 -3.88 -0.06 -17.39 16 10 N -0.59 -15.81 2.19 -821.54 -1.80 -17.61 16 11 C 0.11 2.32 6.11 86.39 0.53 2.84 16 12 C -0.15 -3.07 5.79 30.31 0.18 -2.90 16 13 C 0.07 1.93 6.37 71.50 0.46 2.39 16 14 O -0.40 -14.66 9.18 -117.85 -1.08 -15.74 16 15 C 0.11 3.96 2.06 31.21 0.06 4.02 16 16 H 0.02 0.92 7.32 -2.39 -0.02 0.90 16 17 C 0.17 6.94 5.95 86.38 0.51 7.46 16 18 N -0.74 -38.31 5.49 -343.45 -1.89 -40.19 16 19 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 22 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 23 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 27 C 0.08 2.35 4.41 87.25 0.38 2.74 16 28 N -0.24 -7.23 7.45 -48.17 -0.36 -7.59 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.92 6.89 -2.39 -0.02 1.90 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.95 7.07 -2.39 -0.02 1.94 16 39 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 40 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.03 1.01 7.40 -2.39 -0.02 1.00 16 42 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.37 21.36 7.53 -92.71 -0.70 20.66 16 46 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.11 2.97 5.32 -2.39 -0.01 2.95 16 48 H 0.10 2.45 8.11 -2.39 -0.02 2.43 16 Total: -1.00 -73.29 385.68 2.87 -70.42 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.28 Total: 34.51 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 6.77 Total: 19.46 kcal Atomic # 7 Polarization: -133.89 SS G_CDS: -5.06 Total: -138.95 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.14 Total: -33.13 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -73.29 2.87 -70.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202237096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.548 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds