Wall clock time and date at job start Tue Mar 31 2020 20:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99639 * 2 1 4 4 C 1.53002 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47235 * 305.00327 * 4 3 2 6 6 C 1.53002 * 109.46810 * 65.00190 * 4 3 2 7 7 N 1.46499 * 109.47459 * 185.00212 * 4 3 2 8 8 C 1.34963 * 125.97730 * 274.72366 * 7 4 3 9 9 C 1.35241 * 107.86067 * 179.83927 * 8 7 4 10 10 C 1.40402 * 107.86680 * 0.41514 * 9 8 7 11 11 N 1.40192 * 125.97401 * 179.76326 * 10 9 8 12 12 C 1.34773 * 119.99808 * 0.02562 * 11 10 9 13 13 O 1.21588 * 120.00083 * 355.04107 * 12 11 10 14 14 N 1.34785 * 119.99743 * 175.04488 * 12 11 10 15 15 C 1.46968 * 120.59478 * 4.71834 * 14 12 11 16 16 C 1.53807 * 108.40051 * 124.75479 * 15 14 12 17 17 N 1.46973 * 108.57740 * 49.63686 * 16 15 14 18 18 C 1.36934 * 120.59353 * 124.63010 * 17 16 15 19 19 H 1.08005 * 119.99423 * 214.95374 * 18 17 16 20 20 C 1.38807 * 120.00314 * 34.94567 * 18 17 16 21 21 N 1.31620 * 120.00214 * 15.43806 * 20 18 17 22 22 Si 1.86801 * 120.00110 * 195.44040 * 20 18 17 23 23 H 1.48505 * 109.47074 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47032 * 119.99657 * 22 20 18 25 25 H 1.48494 * 109.47329 * 240.00134 * 22 20 18 26 26 C 1.46961 * 118.81156 * 304.64474 * 17 16 15 27 27 C 1.46959 * 120.59196 * 184.99354 * 14 12 11 28 28 N 1.31218 * 108.05519 * 359.74350 * 10 9 8 29 29 H 1.09002 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47510 * 299.99613 * 1 2 3 31 31 H 1.08997 * 109.47495 * 60.00298 * 1 2 3 32 32 H 1.09010 * 109.47140 * 60.00182 * 3 2 1 33 33 H 1.08998 * 109.47430 * 299.99873 * 3 2 1 34 34 H 1.09001 * 109.47109 * 60.00060 * 6 4 3 35 35 H 1.09005 * 109.46988 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.47407 * 300.00061 * 6 4 3 37 37 H 1.08003 * 126.06530 * 359.97438 * 8 7 4 38 38 H 1.08002 * 126.06702 * 180.16251 * 9 8 7 39 39 H 0.96998 * 119.99852 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.60465 * 244.53866 * 15 14 12 41 41 H 1.09003 * 109.60617 * 5.04631 * 15 14 12 42 42 H 1.09008 * 109.74409 * 289.85051 * 16 15 14 43 43 H 1.08990 * 109.53493 * 169.29975 * 16 15 14 44 44 H 0.96996 * 120.00510 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.61185 * 295.48726 * 26 17 16 46 46 H 1.08997 * 109.75429 * 175.05636 * 26 17 16 47 47 H 1.09001 * 109.61560 * 354.94911 * 27 14 12 48 48 H 1.09002 * 109.61167 * 115.29262 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8507 0.5686 0.8427 6 6 3.9961 0.5366 -1.3065 7 7 4.1308 2.5179 0.1211 8 6 4.3788 3.3703 -0.8955 9 6 4.9264 4.4910 -0.3729 10 6 5.0261 4.3143 1.0163 11 7 5.5457 5.2426 1.9294 12 6 6.0064 6.4315 1.4930 13 8 6.0554 6.6640 0.3005 14 7 6.4131 7.3628 2.3784 15 6 6.4571 7.0596 3.8158 16 6 7.8786 7.3451 4.3289 17 7 8.2802 8.6841 3.8749 18 6 8.6925 9.6305 4.7745 19 1 8.4564 10.6714 4.6096 20 6 9.4138 9.2520 5.8985 21 7 9.9622 8.0570 5.9570 22 14 9.6061 10.4389 7.3282 23 1 8.8997 11.7075 7.0169 24 1 9.0229 9.8361 8.5538 25 1 11.0478 10.7163 7.5507 26 6 8.2309 8.9891 2.4381 27 6 6.8146 8.7016 1.9244 28 7 4.5476 3.1284 1.3108 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8901 33 1 1.6885 1.8464 -0.8900 34 1 3.6808 1.1528 -2.1485 35 1 5.0828 0.4502 -1.3058 36 1 3.5532 -0.4553 -1.3961 37 1 4.1739 3.1902 -1.9406 38 1 5.2363 5.3650 -0.9266 39 1 5.5735 5.0292 2.8752 40 1 5.7411 7.6889 4.3445 41 1 6.2128 6.0094 3.9757 42 1 8.5698 6.6016 3.9317 43 1 7.8867 7.3106 5.4183 44 1 10.4665 7.7926 6.7423 45 1 8.9470 8.3626 1.9064 46 1 8.4727 10.0394 2.2760 47 1 6.8066 8.7362 0.8350 48 1 6.1218 9.4449 2.3191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203978741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:57 Heat of formation + Delta-G solvation = 56.878723 kcal Electronic energy + Delta-G solvation = -29192.673771 eV Core-core repulsion = 25093.667756 eV Total energy + Delta-G solvation = -4099.006015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.43190 -39.94906 -38.52646 -37.02515 -35.46591 -34.18219 -33.66324 -31.29374 -30.27832 -29.99828 -29.09674 -27.87438 -26.86955 -26.00779 -23.89304 -23.10067 -22.79657 -21.80629 -20.42718 -20.18810 -18.89039 -18.02905 -17.56360 -16.91725 -16.39790 -16.24699 -16.16948 -15.76318 -15.34302 -14.98365 -14.58737 -14.38368 -14.03038 -13.82055 -13.65517 -13.49947 -13.45496 -13.31047 -13.10591 -12.87006 -12.65722 -12.54614 -12.06556 -11.77773 -11.65032 -11.52799 -11.38346 -10.86970 -10.79201 -10.72005 -10.69154 -10.47931 -10.31257 -10.19758 -10.12941 -9.86162 -9.59828 -8.82682 -8.62207 -8.43276 -8.01955 -6.64830 -5.88463 -3.39534 1.79336 1.96532 2.78030 2.85489 3.31460 3.40246 3.42285 3.48118 3.63390 4.02790 4.16589 4.42110 4.42648 4.66701 4.72707 4.84207 4.86887 4.99034 5.03577 5.18810 5.20451 5.28345 5.30447 5.33506 5.49134 5.64941 5.70919 5.72474 5.81665 5.84794 5.89181 6.05534 6.14082 6.27448 6.29688 6.45855 6.56118 6.73862 6.88324 6.92975 7.00665 7.05757 7.20697 7.35494 7.70592 7.74532 8.18088 8.38052 8.74512 9.10008 9.70891 10.32386 11.19034 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.002041 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.497580 B =13718.816627 C =14251.859360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.170 3.830 5 H 0.109 0.891 6 C -0.159 4.159 7 N -0.370 5.370 8 C 0.058 3.942 9 C -0.259 4.259 10 C 0.329 3.671 11 N -0.651 5.651 12 C 0.714 3.286 13 O -0.580 6.580 14 N -0.607 5.607 15 C 0.083 3.917 16 C 0.163 3.837 17 N -0.589 5.589 18 C -0.261 4.261 19 H 0.065 0.935 20 C 0.010 3.990 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.130 3.870 27 C 0.113 3.887 28 N -0.331 5.331 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.411 0.589 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.090 0.910 44 H 0.255 0.745 45 H 0.025 0.975 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 -14.125 -12.813 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.027 4.027 4 C 0.067 3.933 5 H 0.127 0.873 6 C -0.217 4.217 7 N -0.156 5.156 8 C -0.086 4.086 9 C -0.290 4.290 10 C 0.071 3.929 11 N -0.305 5.305 12 C 0.415 3.585 13 O -0.458 6.458 14 N -0.342 5.342 15 C -0.042 4.042 16 C 0.036 3.964 17 N -0.311 5.311 18 C -0.391 4.391 19 H 0.083 0.917 20 C -0.190 4.190 21 N -0.541 5.541 22 Si 0.732 3.268 23 H -0.201 1.201 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.003 3.997 27 C -0.011 4.011 28 N -0.160 5.160 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.190 0.810 38 H 0.192 0.808 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.841 -15.030 -12.593 25.848 hybrid contribution 0.127 1.131 0.842 1.416 sum -16.715 -13.899 -11.751 24.711 Atomic orbital electron populations 1.22777 0.80250 1.03031 1.00300 1.87801 1.20266 1.26904 1.95538 1.22891 0.92986 0.85291 1.01514 1.20864 0.90959 0.79922 1.01541 0.87257 1.22149 1.02578 1.01928 0.95063 1.48057 1.49884 1.13887 1.03729 1.22493 1.00657 0.90435 0.95021 1.21913 1.12489 1.01896 0.92673 1.18905 0.95342 0.88779 0.89838 1.41945 1.64017 1.14532 1.09985 1.15595 0.78232 0.79439 0.85228 1.90784 1.61766 1.79196 1.14009 1.47240 1.67384 1.12859 1.06743 1.22731 1.02856 0.98762 0.79858 1.21143 0.88139 0.87034 1.00102 1.43879 1.75958 1.11090 1.00223 1.19168 1.28682 0.89377 1.01849 0.91690 1.25257 0.96224 0.96972 1.00569 1.70024 1.35210 1.20026 1.28816 0.86228 0.77499 0.80624 0.82404 1.20080 1.21460 1.21598 1.21349 0.92347 0.99325 0.86631 1.22179 0.98300 0.80673 0.99914 1.77369 1.25711 1.07979 1.04961 0.89232 0.93813 0.93874 0.92264 0.92565 0.91667 0.91232 0.89325 0.80984 0.80836 0.75010 0.91325 0.92055 0.95499 0.89219 0.93491 0.95723 0.91338 0.89655 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.15 10.24 -35.23 -0.36 -3.51 16 3 C 0.05 0.42 5.64 37.16 0.21 0.63 16 4 C 0.17 1.51 3.64 -67.93 -0.25 1.26 16 5 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.16 -1.04 8.72 37.16 0.32 -0.71 16 7 N -0.37 -4.40 3.53 -54.88 -0.19 -4.60 16 8 C 0.06 0.67 10.58 -17.24 -0.18 0.48 16 9 C -0.26 -3.85 9.61 -39.84 -0.38 -4.24 16 10 C 0.33 5.26 8.11 -154.36 -1.25 4.01 16 11 N -0.65 -10.45 5.36 -15.50 -0.08 -10.54 16 12 C 0.71 12.91 8.26 -86.91 -0.72 12.19 16 13 O -0.58 -11.50 12.90 5.29 0.07 -11.44 16 14 N -0.61 -10.92 2.94 -177.94 -0.52 -11.44 16 15 C 0.08 1.44 6.59 -3.37 -0.02 1.42 16 16 C 0.16 3.62 5.48 -3.36 -0.02 3.60 16 17 N -0.59 -14.12 2.93 -171.77 -0.50 -14.62 16 18 C -0.26 -6.86 9.51 -15.06 -0.14 -7.00 16 19 H 0.07 1.68 7.88 -52.48 -0.41 1.27 16 20 C 0.01 0.26 4.90 -17.43 -0.09 0.17 16 21 N -0.90 -25.23 11.60 55.49 0.64 -24.58 16 22 Si 0.90 20.90 29.58 -169.99 -5.03 15.87 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.13 2.70 6.67 -3.60 -0.02 2.67 16 27 C 0.11 2.04 6.60 -3.60 -0.02 2.01 16 28 N -0.33 -4.98 12.59 31.44 0.40 -4.58 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.35 7.15 -51.93 -0.37 -0.02 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.51 7.82 -51.93 -0.41 0.11 16 37 H 0.17 1.28 7.25 -52.48 -0.38 0.90 16 38 H 0.17 2.81 5.93 -52.49 -0.31 2.50 16 39 H 0.41 5.90 6.29 -40.82 -0.26 5.64 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.90 5.61 -51.93 -0.29 0.61 16 42 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 43 H 0.09 2.18 6.46 -51.93 -0.34 1.85 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 1.35 7.94 -51.93 -0.41 0.93 16 47 H 0.09 1.48 6.99 -51.93 -0.36 1.12 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -32.22 385.48 -8.55 -40.77 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.33 Total: 5.04 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: -1.45 Total: 17.82 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -0.26 Total: -70.36 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.29 Total: -14.95 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.22 -8.55 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203978741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.647 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds