Wall clock time and date at job start Tue Mar 31 2020 20:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99639 * 2 1 4 4 C 1.53002 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47235 * 305.00327 * 4 3 2 6 6 C 1.53002 * 109.46810 * 65.00190 * 4 3 2 7 7 N 1.46499 * 109.47459 * 185.00212 * 4 3 2 8 8 C 1.34963 * 125.97730 * 274.72366 * 7 4 3 9 9 C 1.35241 * 107.86067 * 179.83927 * 8 7 4 10 10 C 1.40402 * 107.86680 * 0.41514 * 9 8 7 11 11 N 1.40192 * 125.97401 * 179.76326 * 10 9 8 12 12 C 1.34773 * 119.99808 * 0.02562 * 11 10 9 13 13 O 1.21588 * 120.00083 * 355.04107 * 12 11 10 14 14 N 1.34785 * 119.99743 * 175.04488 * 12 11 10 15 15 C 1.46968 * 120.59478 * 4.71834 * 14 12 11 16 16 C 1.53807 * 108.40051 * 124.75479 * 15 14 12 17 17 N 1.46973 * 108.57740 * 49.63686 * 16 15 14 18 18 C 1.36934 * 120.59353 * 124.63010 * 17 16 15 19 19 H 1.08005 * 119.99423 * 214.95374 * 18 17 16 20 20 C 1.38807 * 120.00314 * 34.94567 * 18 17 16 21 21 N 1.31620 * 120.00214 * 15.43806 * 20 18 17 22 22 Si 1.86801 * 120.00110 * 195.44040 * 20 18 17 23 23 H 1.48505 * 109.47074 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47032 * 119.99657 * 22 20 18 25 25 H 1.48494 * 109.47329 * 240.00134 * 22 20 18 26 26 C 1.46961 * 118.81156 * 304.64474 * 17 16 15 27 27 C 1.46959 * 120.59196 * 184.99354 * 14 12 11 28 28 N 1.31218 * 108.05519 * 359.74350 * 10 9 8 29 29 H 1.09002 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47510 * 299.99613 * 1 2 3 31 31 H 1.08997 * 109.47495 * 60.00298 * 1 2 3 32 32 H 1.09010 * 109.47140 * 60.00182 * 3 2 1 33 33 H 1.08998 * 109.47430 * 299.99873 * 3 2 1 34 34 H 1.09001 * 109.47109 * 60.00060 * 6 4 3 35 35 H 1.09005 * 109.46988 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.47407 * 300.00061 * 6 4 3 37 37 H 1.08003 * 126.06530 * 359.97438 * 8 7 4 38 38 H 1.08002 * 126.06702 * 180.16251 * 9 8 7 39 39 H 0.96998 * 119.99852 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.60465 * 244.53866 * 15 14 12 41 41 H 1.09003 * 109.60617 * 5.04631 * 15 14 12 42 42 H 1.09008 * 109.74409 * 289.85051 * 16 15 14 43 43 H 1.08990 * 109.53493 * 169.29975 * 16 15 14 44 44 H 0.96996 * 120.00510 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.61185 * 295.48726 * 26 17 16 46 46 H 1.08997 * 109.75429 * 175.05636 * 26 17 16 47 47 H 1.09001 * 109.61560 * 354.94911 * 27 14 12 48 48 H 1.09002 * 109.61167 * 115.29262 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8507 0.5686 0.8427 6 6 3.9961 0.5366 -1.3065 7 7 4.1308 2.5179 0.1211 8 6 4.3788 3.3703 -0.8955 9 6 4.9264 4.4910 -0.3729 10 6 5.0261 4.3143 1.0163 11 7 5.5457 5.2426 1.9294 12 6 6.0064 6.4315 1.4930 13 8 6.0554 6.6640 0.3005 14 7 6.4131 7.3628 2.3784 15 6 6.4571 7.0596 3.8158 16 6 7.8786 7.3451 4.3289 17 7 8.2802 8.6841 3.8749 18 6 8.6925 9.6305 4.7745 19 1 8.4564 10.6714 4.6096 20 6 9.4138 9.2520 5.8985 21 7 9.9622 8.0570 5.9570 22 14 9.6061 10.4389 7.3282 23 1 8.8997 11.7075 7.0169 24 1 9.0229 9.8361 8.5538 25 1 11.0478 10.7163 7.5507 26 6 8.2309 8.9891 2.4381 27 6 6.8146 8.7016 1.9244 28 7 4.5476 3.1284 1.3108 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8901 33 1 1.6885 1.8464 -0.8900 34 1 3.6808 1.1528 -2.1485 35 1 5.0828 0.4502 -1.3058 36 1 3.5532 -0.4553 -1.3961 37 1 4.1739 3.1902 -1.9406 38 1 5.2363 5.3650 -0.9266 39 1 5.5735 5.0292 2.8752 40 1 5.7411 7.6889 4.3445 41 1 6.2128 6.0094 3.9757 42 1 8.5698 6.6016 3.9317 43 1 7.8867 7.3106 5.4183 44 1 10.4665 7.7926 6.7423 45 1 8.9470 8.3626 1.9064 46 1 8.4727 10.0394 2.2760 47 1 6.8066 8.7362 0.8350 48 1 6.1218 9.4449 2.3191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203978741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:56 Heat of formation + Delta-G solvation = 36.447635 kcal Electronic energy + Delta-G solvation = -29193.559729 eV Core-core repulsion = 25093.667756 eV Total energy + Delta-G solvation = -4099.891973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.51185 -41.29669 -39.17591 -38.59148 -36.50883 -35.71071 -34.93068 -33.09101 -31.88069 -31.08957 -30.09890 -28.59066 -28.35332 -26.58044 -25.62660 -24.61567 -23.77798 -23.24696 -21.63828 -21.39553 -20.29422 -19.44904 -18.46514 -18.08769 -17.78305 -17.12785 -17.01426 -16.95267 -16.67086 -16.29445 -16.01586 -15.51285 -15.43397 -15.19526 -15.17531 -14.98855 -14.63674 -14.37966 -14.21574 -13.95140 -13.60518 -13.30330 -13.19515 -13.16115 -12.70391 -12.63340 -12.51303 -12.38329 -12.24628 -12.18958 -12.06595 -11.96242 -11.78120 -11.73276 -11.62212 -11.07622 -10.75483 -10.60658 -9.99653 -9.82975 -9.21020 -8.57494 -7.88948 -5.44226 0.78320 0.92723 1.47888 1.50887 1.58560 1.61018 1.71263 2.30470 2.50314 2.66741 2.92027 3.26166 3.46715 3.59123 3.79734 3.88548 4.04149 4.13369 4.17117 4.24214 4.28771 4.37618 4.47108 4.49935 4.53377 4.54317 4.58358 4.66643 4.75153 4.78880 4.82126 4.84271 4.85179 4.92702 5.05846 5.15619 5.21861 5.22986 5.44475 5.56551 5.66639 5.74184 5.82655 6.00991 6.15358 6.39442 6.50174 6.91261 7.11790 7.34768 7.77221 8.35305 9.15849 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.002041 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.497580 B =13718.816627 C =14251.859360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.059 3.941 4 C 0.163 3.837 5 H 0.099 0.901 6 C -0.152 4.152 7 N -0.361 5.361 8 C 0.087 3.913 9 C -0.293 4.293 10 C 0.305 3.695 11 N -0.646 5.646 12 C 0.714 3.286 13 O -0.598 6.598 14 N -0.610 5.610 15 C 0.099 3.901 16 C 0.169 3.831 17 N -0.606 5.606 18 C -0.267 4.267 19 H 0.069 0.931 20 C -0.042 4.042 21 N -0.932 5.932 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.288 1.288 25 H -0.295 1.295 26 C 0.131 3.869 27 C 0.125 3.875 28 N -0.352 5.352 29 H 0.104 0.896 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.218 0.782 38 H 0.158 0.842 39 H 0.417 0.583 40 H 0.080 0.920 41 H 0.090 0.910 42 H -0.002 1.002 43 H 0.066 0.934 44 H 0.252 0.748 45 H 0.006 0.994 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.875 -14.793 -14.109 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.019 4.019 4 C 0.062 3.938 5 H 0.118 0.882 6 C -0.210 4.210 7 N -0.147 5.147 8 C -0.059 4.059 9 C -0.323 4.323 10 C 0.049 3.951 11 N -0.299 5.299 12 C 0.416 3.584 13 O -0.477 6.477 14 N -0.346 5.346 15 C -0.025 4.025 16 C 0.042 3.958 17 N -0.329 5.329 18 C -0.397 4.397 19 H 0.086 0.914 20 C -0.238 4.238 21 N -0.577 5.577 22 Si 0.796 3.204 23 H -0.189 1.189 24 H -0.215 1.215 25 H -0.222 1.222 26 C 0.004 3.996 27 C 0.001 3.999 28 N -0.183 5.183 29 H 0.122 0.878 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.234 0.766 38 H 0.175 0.825 39 H 0.256 0.744 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.016 0.984 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.025 0.975 46 H 0.095 0.905 47 H 0.111 0.889 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.924 -15.722 -13.891 28.253 hybrid contribution 0.717 1.209 1.143 1.811 sum -18.207 -14.513 -12.748 26.545 Atomic orbital electron populations 1.22968 0.78889 1.04247 1.00870 1.87779 1.21747 1.26683 1.95620 1.22750 0.92239 0.85498 1.01452 1.21151 0.91596 0.78345 1.02733 0.88242 1.22140 1.02370 1.02518 0.93995 1.48354 1.48707 1.14574 1.03022 1.23010 0.97709 0.88670 0.96535 1.21873 1.15068 1.03032 0.92361 1.19117 0.96428 0.89193 0.90348 1.41772 1.63676 1.14049 1.10422 1.15625 0.78133 0.79787 0.84893 1.90778 1.62526 1.79668 1.14740 1.47242 1.67607 1.12962 1.06789 1.22492 0.99611 1.00846 0.79600 1.20954 0.90376 0.85803 0.98618 1.44145 1.76242 1.11186 1.01347 1.19486 1.27960 0.90028 1.02241 0.91380 1.25989 0.96367 0.98490 1.02964 1.70168 1.36419 1.21817 1.29288 0.85208 0.76876 0.79055 0.79244 1.18857 1.21472 1.22218 1.21416 0.93850 0.99473 0.84819 1.22016 0.96536 0.81106 1.00250 1.77299 1.26172 1.07830 1.06954 0.87785 0.93895 0.92657 0.93922 0.91034 0.89825 0.91591 0.88277 0.76558 0.82457 0.74359 0.90172 0.89218 0.98359 0.91597 0.93932 0.97548 0.90488 0.88895 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.67 10.24 -148.98 -1.53 -7.19 16 3 C 0.06 0.84 5.64 71.98 0.41 1.24 16 4 C 0.16 2.58 3.64 44.99 0.16 2.74 16 5 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 6 C -0.15 -1.52 8.72 71.98 0.63 -0.89 16 7 N -0.36 -7.97 3.53 -327.53 -1.15 -9.12 16 8 C 0.09 1.77 10.58 83.52 0.88 2.65 16 9 C -0.29 -8.48 9.61 22.11 0.21 -8.26 16 10 C 0.31 9.66 8.11 133.31 1.08 10.74 16 11 N -0.65 -20.56 5.36 -321.23 -1.72 -22.28 16 12 C 0.71 25.61 8.26 179.05 1.48 27.08 16 13 O -0.60 -23.67 12.90 -3.99 -0.05 -23.72 16 14 N -0.61 -21.60 2.94 -835.13 -2.46 -24.06 16 15 C 0.10 3.40 6.59 86.56 0.57 3.97 16 16 C 0.17 7.70 5.48 86.56 0.47 8.18 16 17 N -0.61 -29.38 2.93 -697.34 -2.04 -31.42 16 18 C -0.27 -14.08 9.51 84.03 0.80 -13.28 16 19 H 0.07 3.49 7.88 -2.91 -0.02 3.47 16 20 C -0.04 -2.24 4.90 84.86 0.42 -1.83 16 21 N -0.93 -53.69 11.60 21.65 0.25 -53.44 16 22 Si 0.97 43.30 29.58 68.60 2.03 45.33 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 26 C 0.13 5.42 6.67 86.42 0.58 6.00 16 27 C 0.12 4.38 6.60 86.42 0.57 4.95 16 28 N -0.35 -10.39 12.59 -54.43 -0.69 -11.08 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.54 7.15 -2.39 -0.02 0.53 16 35 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.10 0.84 7.82 -2.39 -0.02 0.82 16 37 H 0.22 2.28 7.25 -2.91 -0.02 2.26 16 38 H 0.16 5.10 5.93 -2.91 -0.02 5.08 16 39 H 0.42 11.76 6.29 -92.71 -0.58 11.18 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.09 2.56 5.61 -2.39 -0.01 2.55 16 42 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 43 H 0.07 3.30 6.46 -2.39 -0.02 3.29 16 44 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.08 3.01 7.94 -2.39 -0.02 2.99 16 47 H 0.09 3.15 6.99 -2.39 -0.02 3.13 16 48 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -70.88 385.48 2.54 -68.33 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.39 Total: 23.86 kcal Atomic # 6 Polarization: 35.28 SS G_CDS: 9.51 Total: 44.79 kcal Atomic # 7 Polarization: -143.60 SS G_CDS: -7.81 Total: -151.40 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.58 Total: -30.91 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.88 2.54 -68.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203978741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.781 kcal (2) G-P(sol) polarization free energy of solvation -70.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds