Wall clock time and date at job start Tue Mar 31 2020 20:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99869 * 2 1 4 4 C 1.53000 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46907 * 54.99858 * 4 3 2 6 6 C 1.53004 * 109.46906 * 294.99653 * 4 3 2 7 7 N 1.46493 * 109.47451 * 174.99859 * 4 3 2 8 8 C 1.34967 * 125.98162 * 85.26169 * 7 4 3 9 9 C 1.35243 * 107.86407 * 180.16227 * 8 7 4 10 10 C 1.40403 * 107.86517 * 359.63921 * 9 8 7 11 11 N 1.40189 * 125.96964 * 180.19410 * 10 9 8 12 12 C 1.34775 * 120.00263 * 359.97438 * 11 10 9 13 13 O 1.21593 * 120.00198 * 355.04797 * 12 11 10 14 14 N 1.34777 * 120.00125 * 175.04715 * 12 11 10 15 15 C 1.46970 * 120.59368 * 4.71586 * 14 12 11 16 16 C 1.53807 * 108.39977 * 124.76086 * 15 14 12 17 17 N 1.46965 * 108.58072 * 49.63498 * 16 15 14 18 18 C 1.36935 * 120.59098 * 124.62530 * 17 16 15 19 19 H 1.08002 * 119.99598 * 214.95110 * 18 17 16 20 20 C 1.38810 * 120.00275 * 34.95888 * 18 17 16 21 21 N 1.31625 * 120.00022 * 15.43021 * 20 18 17 22 22 Si 1.86796 * 120.00083 * 195.43127 * 20 18 17 23 23 H 1.48500 * 109.47245 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47019 * 119.99730 * 22 20 18 25 25 H 1.48494 * 109.47504 * 239.99546 * 22 20 18 26 26 C 1.46966 * 118.81410 * 304.64963 * 17 16 15 27 27 C 1.46963 * 120.59356 * 184.99915 * 14 12 11 28 28 N 1.31207 * 108.05550 * 0.22239 * 10 9 8 29 29 H 1.09003 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47159 * 299.99982 * 1 2 3 31 31 H 1.08997 * 109.46986 * 60.00720 * 1 2 3 32 32 H 1.08999 * 109.47520 * 59.99512 * 3 2 1 33 33 H 1.09007 * 109.46952 * 299.99746 * 3 2 1 34 34 H 1.08988 * 109.47202 * 300.00034 * 6 4 3 35 35 H 1.09000 * 109.47026 * 60.00149 * 6 4 3 36 36 H 1.09002 * 109.46797 * 179.97438 * 6 4 3 37 37 H 1.08006 * 126.06558 * 0.02713 * 8 7 4 38 38 H 1.07997 * 126.06454 * 179.89844 * 9 8 7 39 39 H 0.97003 * 119.99709 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.60792 * 244.54348 * 15 14 12 41 41 H 1.09003 * 109.60658 * 5.04978 * 15 14 12 42 42 H 1.09006 * 109.73909 * 289.84609 * 16 15 14 43 43 H 1.09002 * 109.53401 * 169.30478 * 16 15 14 44 44 H 0.96995 * 120.00124 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.61173 * 295.48350 * 26 17 16 46 46 H 1.08994 * 109.75132 * 175.05024 * 26 17 16 47 47 H 1.08992 * 109.61411 * 354.94480 * 27 14 12 48 48 H 1.09004 * 109.61291 * 115.28770 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8514 0.5683 -0.8409 6 6 3.9952 0.5370 1.3084 7 7 4.1309 2.5177 -0.1198 8 6 4.3779 3.3707 0.8967 9 6 4.9261 4.4911 0.3741 10 6 5.0260 4.3142 -1.0151 11 7 5.5453 5.2427 -1.9282 12 6 6.0056 6.4319 -1.4919 13 8 5.8885 6.7365 -0.3206 14 7 6.5956 7.2835 -2.3539 15 6 6.6522 6.9748 -3.7897 16 6 6.0282 8.1484 -4.5636 17 7 6.6319 9.3995 -4.0838 18 6 7.2322 10.2643 -4.9596 19 1 8.1032 10.8246 -4.6534 20 6 6.7211 10.4208 -6.2406 21 7 5.5101 9.9895 -6.5234 22 14 7.7520 11.2436 -7.5633 23 1 9.0667 11.6348 -6.9944 24 1 7.9619 10.2967 -8.6878 25 1 7.0473 12.4528 -8.0596 26 6 6.5802 9.7056 -2.6473 27 6 7.1993 8.5346 -1.8741 28 7 4.5479 3.1284 -1.3095 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.6792 1.1535 2.1498 35 1 3.5522 -0.4548 1.3980 36 1 5.0818 0.4506 1.3086 37 1 4.1720 3.1912 1.9416 38 1 5.2361 5.3650 0.9278 39 1 5.5733 5.0292 -2.8740 40 1 7.6903 6.8427 -4.0947 41 1 6.0905 6.0624 -3.9900 42 1 4.9520 8.1720 -4.3917 43 1 6.2286 8.0303 -5.6285 44 1 5.1532 10.0985 -7.4186 45 1 5.5433 9.8401 -2.3390 46 1 7.1433 10.6165 -2.4443 47 1 6.9990 8.6527 -0.8093 48 1 8.2759 8.5098 -2.0432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203978742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:59 Heat of formation + Delta-G solvation = 56.797049 kcal Electronic energy + Delta-G solvation = -29212.734469 eV Core-core repulsion = 25113.724912 eV Total energy + Delta-G solvation = -4099.009557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.43134 -39.94855 -38.50914 -37.02540 -35.46371 -34.18177 -33.66361 -31.29502 -30.27927 -29.99832 -29.09477 -27.86382 -26.87124 -25.99019 -23.89425 -23.10060 -22.79503 -21.80694 -20.42582 -20.18913 -18.89055 -18.02944 -17.55336 -16.91325 -16.38374 -16.28143 -16.14109 -15.65670 -15.45119 -14.96993 -14.59026 -14.35633 -14.01507 -13.82581 -13.65056 -13.55348 -13.42060 -13.31201 -13.09744 -12.85872 -12.63884 -12.58042 -12.04407 -11.76646 -11.65001 -11.53637 -11.38340 -10.87123 -10.79306 -10.72331 -10.68328 -10.48089 -10.31497 -10.17634 -10.13166 -9.86326 -9.59845 -8.82682 -8.62383 -8.43385 -8.01940 -6.65127 -5.88748 -3.39813 1.78677 1.97595 2.77709 2.86171 3.31315 3.40135 3.42207 3.48879 3.63607 4.02767 4.16869 4.41936 4.43769 4.66920 4.73145 4.86167 4.89431 5.00586 5.05443 5.18766 5.22804 5.28174 5.30376 5.33384 5.48707 5.64506 5.70769 5.72051 5.81578 5.84793 5.89118 6.05579 6.14116 6.27442 6.29521 6.45794 6.57878 6.73678 6.88070 6.92916 7.00542 7.05791 7.20542 7.35101 7.70552 7.74371 8.18083 8.37788 8.74489 9.09757 9.70619 10.32091 11.18726 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021627 B = 0.002103 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.352528 B =13312.859752 C =14127.187648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.170 3.830 5 H 0.109 0.891 6 C -0.159 4.159 7 N -0.370 5.370 8 C 0.058 3.942 9 C -0.259 4.259 10 C 0.329 3.671 11 N -0.651 5.651 12 C 0.714 3.286 13 O -0.580 6.580 14 N -0.606 5.606 15 C 0.082 3.918 16 C 0.163 3.837 17 N -0.589 5.589 18 C -0.261 4.261 19 H 0.066 0.934 20 C 0.009 3.991 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.131 3.869 27 C 0.113 3.887 28 N -0.331 5.331 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.411 0.589 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.090 0.910 44 H 0.255 0.745 45 H 0.025 0.975 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 -19.048 14.258 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.027 4.027 4 C 0.067 3.933 5 H 0.127 0.873 6 C -0.217 4.217 7 N -0.156 5.156 8 C -0.086 4.086 9 C -0.290 4.290 10 C 0.071 3.929 11 N -0.305 5.305 12 C 0.415 3.585 13 O -0.458 6.458 14 N -0.342 5.342 15 C -0.042 4.042 16 C 0.036 3.964 17 N -0.312 5.312 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.190 4.190 21 N -0.541 5.541 22 Si 0.733 3.267 23 H -0.201 1.201 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.004 3.996 27 C -0.011 4.011 28 N -0.160 5.160 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.190 0.810 38 H 0.192 0.808 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.789 -19.823 14.000 24.949 hybrid contribution 0.240 1.082 -0.827 1.383 sum -5.549 -18.742 13.172 23.570 Atomic orbital electron populations 1.22781 0.80212 1.03018 1.00360 1.87793 1.20301 1.26906 1.95552 1.22894 0.92945 0.85303 1.01606 1.20860 0.91018 0.79902 1.01478 0.87280 1.22145 1.02490 1.01952 0.95101 1.48060 1.49865 1.13894 1.03746 1.22495 1.00660 0.90423 0.95029 1.21913 1.12640 1.01744 0.92672 1.18901 0.95384 0.88767 0.89808 1.41945 1.64033 1.14535 1.09966 1.15594 0.78544 0.79382 0.84973 1.90785 1.63002 1.76130 1.15849 1.47239 1.58571 1.21071 1.07340 1.22732 1.01749 0.99744 0.79988 1.21141 0.94470 0.82869 0.97931 1.43879 1.67155 1.18816 1.01304 1.19170 1.06518 1.19973 0.93386 0.91683 1.25261 0.95137 0.98977 0.99673 1.70027 1.14014 1.49843 1.20211 0.86223 0.79890 0.78835 0.81789 1.20072 1.21457 1.21608 1.21351 0.97889 0.94578 0.85827 1.22179 0.96644 0.82939 0.99306 1.77364 1.25564 1.08176 1.04915 0.89240 0.93859 0.93763 0.92549 0.92188 0.91656 0.89325 0.91297 0.80987 0.80837 0.75010 0.91305 0.92057 0.95524 0.89216 0.93501 0.95741 0.91334 0.89651 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.23 10.24 -35.23 -0.36 -3.59 16 3 C 0.05 0.43 5.64 37.16 0.21 0.64 16 4 C 0.17 1.51 3.64 -67.93 -0.25 1.27 16 5 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.16 -1.01 8.72 37.16 0.32 -0.69 16 7 N -0.37 -4.41 3.53 -54.88 -0.19 -4.60 16 8 C 0.06 0.67 10.58 -17.24 -0.18 0.48 16 9 C -0.26 -3.85 9.61 -39.83 -0.38 -4.24 16 10 C 0.33 5.26 8.11 -154.37 -1.25 4.01 16 11 N -0.65 -10.45 5.36 -15.51 -0.08 -10.54 16 12 C 0.71 12.91 8.26 -86.92 -0.72 12.20 16 13 O -0.58 -11.51 12.90 5.28 0.07 -11.44 16 14 N -0.61 -10.92 2.94 -177.94 -0.52 -11.44 16 15 C 0.08 1.44 6.59 -3.37 -0.02 1.42 16 16 C 0.16 3.62 5.48 -3.37 -0.02 3.60 16 17 N -0.59 -14.12 2.93 -171.76 -0.50 -14.62 16 18 C -0.26 -6.84 9.51 -15.06 -0.14 -6.99 16 19 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 20 C 0.01 0.25 4.90 -17.43 -0.09 0.17 16 21 N -0.90 -25.21 11.60 55.49 0.64 -24.57 16 22 Si 0.90 20.90 29.58 -169.99 -5.03 15.87 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.13 2.70 6.67 -3.59 -0.02 2.67 16 27 C 0.11 2.04 6.60 -3.59 -0.02 2.01 16 28 N -0.33 -4.98 12.59 31.44 0.40 -4.58 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.35 7.14 -51.94 -0.37 -0.02 16 35 H 0.09 0.50 7.82 -51.93 -0.41 0.10 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.17 1.28 7.25 -52.48 -0.38 0.90 16 38 H 0.17 2.81 5.93 -52.49 -0.31 2.50 16 39 H 0.41 5.90 6.29 -40.82 -0.26 5.64 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 0.90 5.61 -51.93 -0.29 0.61 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 2.18 6.46 -51.93 -0.34 1.84 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.07 1.35 7.94 -51.93 -0.41 0.93 16 47 H 0.09 1.48 6.99 -51.93 -0.36 1.12 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -32.18 385.48 -8.55 -40.73 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.33 Total: 5.10 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: -1.45 Total: 17.87 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -0.26 Total: -70.35 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.29 Total: -15.03 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.18 -8.55 -40.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203978742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.528 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds