Wall clock time and date at job start Tue Mar 31 2020 20:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.50696 * 109.47300 * 240.00105 * 2 1 3 5 5 O 1.21284 * 120.00096 * 239.99841 * 4 2 1 6 6 N 1.34774 * 119.99838 * 59.99778 * 4 2 1 7 7 C 1.46506 * 120.00072 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47289 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47131 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47379 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99768 * 66.04175 * 10 9 8 12 12 C 1.46901 * 110.99981 * 189.99544 * 10 9 8 13 13 C 1.50704 * 109.46627 * 169.99893 * 12 10 9 14 14 O 1.21290 * 120.00147 * 0.02562 * 13 12 10 15 15 N 1.34773 * 119.99843 * 180.02562 * 13 12 10 16 16 C 1.37094 * 120.00191 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00155 * 359.97438 * 16 15 13 18 18 C 1.38955 * 120.00222 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00017 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99911 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47265 * 89.99517 * 20 18 16 22 22 H 1.48499 * 109.47032 * 209.99735 * 20 18 16 23 23 H 1.48500 * 109.46940 * 329.99686 * 20 18 16 24 24 N 1.46499 * 109.47125 * 119.99785 * 2 1 3 25 25 C 1.34947 * 126.03821 * 35.00406 * 24 2 1 26 26 C 1.35316 * 107.74916 * 179.97438 * 25 24 2 27 27 C 1.39876 * 107.91510 * 359.97438 * 26 25 24 28 28 N 1.30836 * 108.20808 * 359.74783 * 27 26 25 29 29 H 1.09000 * 109.47312 * 59.99944 * 1 2 3 30 30 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47067 * 299.99917 * 1 2 3 32 32 H 0.97001 * 120.00676 * 359.97438 * 6 4 2 33 33 H 1.09001 * 109.47060 * 300.00359 * 7 6 4 34 34 H 1.09004 * 109.47073 * 59.99848 * 7 6 4 35 35 H 1.09001 * 109.46832 * 299.99854 * 8 7 6 36 36 H 1.08996 * 109.46952 * 59.99873 * 8 7 6 37 37 H 1.09001 * 109.46997 * 299.99574 * 9 8 7 38 38 H 1.09004 * 109.47298 * 59.99717 * 9 8 7 39 39 H 1.09002 * 109.47070 * 60.00584 * 11 10 9 40 40 H 1.08996 * 109.47018 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47481 * 300.00163 * 11 10 9 42 42 H 1.09000 * 109.47352 * 289.99687 * 12 10 9 43 43 H 1.09003 * 109.47098 * 50.00550 * 12 10 9 44 44 H 0.97003 * 119.99871 * 359.97438 * 15 13 12 45 45 H 0.96999 * 120.00145 * 180.02562 * 19 18 16 46 46 H 1.08002 * 126.12729 * 359.95032 * 25 24 2 47 47 H 1.07994 * 126.04305 * 179.97438 * 26 25 24 48 48 H 1.08003 * 125.89125 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9408 -3.6507 8 6 1.6853 -0.2191 -4.9000 9 6 2.1943 -0.9410 -6.1492 10 7 1.7047 -0.2485 -7.3486 11 6 2.2910 1.0941 -7.4575 12 6 1.9706 -1.0387 -8.5581 13 6 1.2461 -0.4249 -9.7284 14 8 0.5747 0.5729 -9.5705 15 7 1.3441 -0.9847 -10.9504 16 6 0.6854 -0.4261 -12.0152 17 1 0.0877 0.4623 -11.8746 18 6 0.7869 -1.0030 -13.2752 19 7 0.1552 -0.4678 -14.2957 20 14 1.8203 -2.5400 -13.5183 21 1 0.9752 -3.7429 -13.3085 22 1 2.3685 -2.5548 -14.8983 23 1 2.9386 -2.5443 -12.5413 24 7 2.0184 -0.6906 1.1962 25 6 1.4403 -1.7559 1.7895 26 6 2.1968 -2.0929 2.8596 27 6 3.2745 -1.2034 2.9220 28 7 3.1717 -0.3659 1.9221 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1488 0.5385 -2.5436 33 1 3.2847 -0.9412 -3.6509 34 1 1.8310 -1.9684 -3.6506 35 1 0.5953 -0.2184 -4.9000 36 1 2.0493 0.8083 -4.8998 37 1 3.2843 -0.9421 -6.1494 38 1 1.8299 -1.9683 -6.1490 39 1 3.3762 1.0127 -7.5194 40 1 1.9121 1.5844 -8.3542 41 1 2.0201 1.6811 -6.5799 42 1 3.0420 -1.0475 -8.7582 43 1 1.6203 -2.0601 -8.4091 44 1 1.8813 -1.7825 -11.0768 45 1 0.2257 -0.8707 -15.1752 46 1 0.5356 -2.2506 1.4681 47 1 2.0028 -2.9051 3.5444 48 1 4.0582 -1.2094 3.6651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234261731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:26 Heat of formation + Delta-G solvation = 24.816989 kcal Electronic energy + Delta-G solvation = -27841.320496 eV Core-core repulsion = 23740.924180 eV Total energy + Delta-G solvation = -4100.396316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66606 -40.02851 -38.87268 -37.13657 -35.44199 -35.09768 -33.93870 -31.87406 -31.65871 -30.40949 -29.83536 -28.10098 -26.79025 -25.37986 -24.54987 -22.88901 -21.80057 -21.39830 -21.06889 -20.10979 -19.37093 -18.31667 -18.07807 -17.55833 -16.49650 -16.27061 -15.88963 -15.54836 -15.28806 -14.99317 -14.88235 -14.71888 -14.39867 -14.10179 -13.94378 -13.80469 -13.51151 -13.26780 -13.11953 -13.09347 -12.88533 -12.51393 -12.44300 -12.23674 -12.19363 -11.85931 -11.81082 -11.43066 -11.37316 -11.04803 -11.01633 -10.85772 -10.61469 -10.51226 -9.99672 -9.71411 -9.56175 -9.54191 -8.91362 -8.61231 -8.20273 -8.01015 -6.33116 -3.84527 1.48653 1.94155 2.07120 2.58104 2.73135 3.00870 3.05371 3.13690 3.71283 3.83239 3.89303 4.07790 4.08554 4.22461 4.44056 4.61123 4.67136 4.71333 4.79305 4.84893 4.91251 4.94618 5.19048 5.19380 5.25919 5.28476 5.37724 5.44891 5.46871 5.52058 5.60600 5.70515 5.77161 5.81099 5.85562 5.90833 5.93790 6.00951 6.31639 6.45678 6.58297 6.95892 7.10403 7.25097 7.37790 7.56488 7.66984 8.12510 8.58236 8.93255 9.40516 9.81376 10.79974 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034212 B = 0.001486 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.223492 B =18832.684024 C =19139.832321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.129 0.871 4 C 0.499 3.501 5 O -0.520 6.520 6 N -0.723 5.723 7 C 0.121 3.879 8 C -0.128 4.128 9 C 0.058 3.942 10 N -0.519 5.519 11 C 0.019 3.981 12 C 0.043 3.957 13 C 0.453 3.547 14 O -0.560 6.560 15 N -0.591 5.591 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.879 3.121 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 N -0.357 5.357 25 C 0.068 3.932 26 C -0.274 4.274 27 C 0.048 3.952 28 N -0.292 5.292 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.403 0.597 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.015 0.985 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.170 0.830 47 H 0.148 0.852 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -2.156 31.360 31.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.147 0.853 4 C 0.283 3.717 5 O -0.395 6.395 6 N -0.376 5.376 7 C -0.003 4.003 8 C -0.166 4.166 9 C -0.071 4.071 10 N -0.242 5.242 11 C -0.129 4.129 12 C -0.089 4.089 13 C 0.238 3.762 14 O -0.442 6.442 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 N -0.139 5.139 25 C -0.078 4.078 26 C -0.303 4.303 27 C -0.139 4.139 28 N -0.113 5.113 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.238 0.762 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.033 0.967 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.187 0.813 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.267 -1.081 30.623 30.815 hybrid contribution 1.122 -1.787 -0.221 2.122 sum 4.389 -2.869 30.401 30.850 Atomic orbital electron populations 1.22177 0.90317 1.04520 1.04975 1.21085 0.96239 0.97747 0.81261 0.85347 1.20737 0.81026 0.85239 0.84737 1.90786 1.36597 1.25669 1.86410 1.45943 1.53867 1.32371 1.05379 1.21384 0.99492 0.96550 0.82871 1.21778 1.02615 0.99952 0.92224 1.22002 0.97294 0.98159 0.89656 1.61545 1.59046 1.02922 1.00723 1.22599 0.95601 0.90311 1.04392 1.21902 0.98498 0.97911 0.90565 1.19631 0.86224 0.87000 0.83315 1.90520 1.43327 1.26496 1.83830 1.42216 1.45748 1.26950 1.08131 1.19425 1.26469 1.12284 0.85205 0.86267 1.25031 0.97622 0.98170 0.95275 1.69616 1.41957 1.40152 1.00391 0.86678 0.80508 0.83588 0.78646 1.19593 1.20183 1.19549 1.48180 1.19555 1.24697 1.21470 1.22423 0.99897 0.90591 0.94858 1.21484 0.99288 1.06225 1.03332 1.23892 0.99101 0.93973 0.96926 1.77364 1.01798 1.24659 1.07431 0.89071 0.90751 0.89922 0.76214 0.91370 0.91083 0.89983 0.90930 0.94813 0.90552 0.96686 0.88532 0.91934 0.93319 0.89230 0.79718 0.91607 0.81281 0.83464 0.79979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 8.73 37.16 0.32 -0.20 16 2 C 0.14 0.96 3.73 -69.08 -0.26 0.70 16 3 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.50 4.59 7.22 -10.99 -0.08 4.51 16 5 O -0.52 -7.31 16.42 5.55 0.09 -7.22 16 6 N -0.72 -4.94 5.45 -60.29 -0.33 -5.26 16 7 C 0.12 0.99 5.67 -4.04 -0.02 0.97 16 8 C -0.13 -1.08 5.25 -26.73 -0.14 -1.22 16 9 C 0.06 0.62 4.96 -3.83 -0.02 0.60 16 10 N -0.52 -7.76 4.50 -244.36 -1.10 -8.86 16 11 C 0.02 0.28 8.96 60.07 0.54 0.81 16 12 C 0.04 0.69 5.45 -4.97 -0.03 0.67 16 13 C 0.45 10.05 7.47 -10.98 -0.08 9.97 16 14 O -0.56 -14.55 13.91 5.55 0.08 -14.47 16 15 N -0.59 -13.86 5.09 -10.96 -0.06 -13.92 16 16 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 17 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 19 N -0.88 -25.52 13.96 55.50 0.77 -24.74 16 20 Si 0.88 19.18 27.74 -169.99 -4.72 14.47 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 24 N -0.36 -3.38 3.02 -55.99 -0.17 -3.55 16 25 C 0.07 0.56 10.57 -17.22 -0.18 0.37 16 26 C -0.27 -2.23 10.80 -40.01 -0.43 -2.66 16 27 C 0.05 0.43 12.03 -17.36 -0.21 0.22 16 28 N -0.29 -3.31 12.58 30.63 0.39 -2.93 16 29 H 0.09 0.12 7.56 -51.93 -0.39 -0.27 16 30 H 0.07 0.26 7.16 -51.93 -0.37 -0.12 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.40 1.57 7.89 -40.82 -0.32 1.25 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 37 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 38 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 1.79 5.82 -51.93 -0.30 1.49 16 41 H 0.06 0.78 6.47 -51.93 -0.34 0.44 16 42 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 43 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 44 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.17 0.90 7.26 -52.49 -0.38 0.52 16 47 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -37.85 397.16 -7.18 -45.03 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.29 Total: 8.35 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -0.84 Total: 7.12 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.49 Total: -59.26 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.17 Total: -21.69 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.72 Total: 14.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.85 -7.18 -45.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234261731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.843 kcal (2) G-P(sol) polarization free energy of solvation -37.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds