Wall clock time and date at job start Tue Mar 31 2020 20:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.50696 * 109.47300 * 240.00105 * 2 1 3 5 5 O 1.21284 * 120.00096 * 239.99841 * 4 2 1 6 6 N 1.34774 * 119.99838 * 59.99778 * 4 2 1 7 7 C 1.46506 * 120.00072 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47289 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47131 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47379 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99768 * 66.04175 * 10 9 8 12 12 C 1.46901 * 110.99981 * 189.99544 * 10 9 8 13 13 C 1.50704 * 109.46627 * 169.99893 * 12 10 9 14 14 O 1.21290 * 120.00147 * 0.02562 * 13 12 10 15 15 N 1.34773 * 119.99843 * 180.02562 * 13 12 10 16 16 C 1.37094 * 120.00191 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00155 * 359.97438 * 16 15 13 18 18 C 1.38955 * 120.00222 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00017 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99911 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47265 * 89.99517 * 20 18 16 22 22 H 1.48499 * 109.47032 * 209.99735 * 20 18 16 23 23 H 1.48500 * 109.46940 * 329.99686 * 20 18 16 24 24 N 1.46499 * 109.47125 * 119.99785 * 2 1 3 25 25 C 1.34947 * 126.03821 * 35.00406 * 24 2 1 26 26 C 1.35316 * 107.74916 * 179.97438 * 25 24 2 27 27 C 1.39876 * 107.91510 * 359.97438 * 26 25 24 28 28 N 1.30836 * 108.20808 * 359.74783 * 27 26 25 29 29 H 1.09000 * 109.47312 * 59.99944 * 1 2 3 30 30 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47067 * 299.99917 * 1 2 3 32 32 H 0.97001 * 120.00676 * 359.97438 * 6 4 2 33 33 H 1.09001 * 109.47060 * 300.00359 * 7 6 4 34 34 H 1.09004 * 109.47073 * 59.99848 * 7 6 4 35 35 H 1.09001 * 109.46832 * 299.99854 * 8 7 6 36 36 H 1.08996 * 109.46952 * 59.99873 * 8 7 6 37 37 H 1.09001 * 109.46997 * 299.99574 * 9 8 7 38 38 H 1.09004 * 109.47298 * 59.99717 * 9 8 7 39 39 H 1.09002 * 109.47070 * 60.00584 * 11 10 9 40 40 H 1.08996 * 109.47018 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47481 * 300.00163 * 11 10 9 42 42 H 1.09000 * 109.47352 * 289.99687 * 12 10 9 43 43 H 1.09003 * 109.47098 * 50.00550 * 12 10 9 44 44 H 0.97003 * 119.99871 * 359.97438 * 15 13 12 45 45 H 0.96999 * 120.00145 * 180.02562 * 19 18 16 46 46 H 1.08002 * 126.12729 * 359.95032 * 25 24 2 47 47 H 1.07994 * 126.04305 * 179.97438 * 26 25 24 48 48 H 1.08003 * 125.89125 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9408 -3.6507 8 6 1.6853 -0.2191 -4.9000 9 6 2.1943 -0.9410 -6.1492 10 7 1.7047 -0.2485 -7.3486 11 6 2.2910 1.0941 -7.4575 12 6 1.9706 -1.0387 -8.5581 13 6 1.2461 -0.4249 -9.7284 14 8 0.5747 0.5729 -9.5705 15 7 1.3441 -0.9847 -10.9504 16 6 0.6854 -0.4261 -12.0152 17 1 0.0877 0.4623 -11.8746 18 6 0.7869 -1.0030 -13.2752 19 7 0.1552 -0.4678 -14.2957 20 14 1.8203 -2.5400 -13.5183 21 1 0.9752 -3.7429 -13.3085 22 1 2.3685 -2.5548 -14.8983 23 1 2.9386 -2.5443 -12.5413 24 7 2.0184 -0.6906 1.1962 25 6 1.4403 -1.7559 1.7895 26 6 2.1968 -2.0929 2.8596 27 6 3.2745 -1.2034 2.9220 28 7 3.1717 -0.3659 1.9221 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1488 0.5385 -2.5436 33 1 3.2847 -0.9412 -3.6509 34 1 1.8310 -1.9684 -3.6506 35 1 0.5953 -0.2184 -4.9000 36 1 2.0493 0.8083 -4.8998 37 1 3.2843 -0.9421 -6.1494 38 1 1.8299 -1.9683 -6.1490 39 1 3.3762 1.0127 -7.5194 40 1 1.9121 1.5844 -8.3542 41 1 2.0201 1.6811 -6.5799 42 1 3.0420 -1.0475 -8.7582 43 1 1.6203 -2.0601 -8.4091 44 1 1.8813 -1.7825 -11.0768 45 1 0.2257 -0.8707 -15.1752 46 1 0.5356 -2.2506 1.4681 47 1 2.0028 -2.9051 3.5444 48 1 4.0582 -1.2094 3.6651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234261731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:25 Heat of formation + Delta-G solvation = -6.266272 kcal Electronic energy + Delta-G solvation = -27842.668367 eV Core-core repulsion = 23740.924180 eV Total energy + Delta-G solvation = -4101.744187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.27042 -40.74919 -40.47469 -38.33774 -36.36528 -35.84982 -35.63112 -33.74714 -32.66761 -31.03251 -30.38132 -29.46406 -27.69536 -26.59746 -25.62224 -23.93465 -22.46715 -22.04885 -21.90836 -21.23699 -20.75579 -20.15604 -18.74188 -18.16780 -17.81336 -17.03976 -16.92119 -16.80101 -16.44003 -16.30216 -15.77057 -15.61461 -15.43945 -15.12279 -14.96170 -14.81988 -14.56641 -14.44186 -14.27326 -13.80686 -13.70153 -13.51575 -13.39120 -13.26713 -13.07928 -12.83656 -12.73381 -12.63090 -12.50315 -12.41151 -12.32391 -11.97571 -11.66146 -11.64810 -11.46255 -11.25067 -10.39070 -10.33986 -10.22688 -10.21627 -9.52467 -9.20570 -8.40501 -6.00901 0.87130 1.30442 1.35766 1.37459 1.43998 1.44420 1.97192 1.97474 2.11481 2.23310 2.66064 3.15508 3.26822 3.41055 3.60666 3.79984 3.94881 3.97508 4.01767 4.11928 4.13934 4.21424 4.39175 4.43409 4.51364 4.56748 4.60291 4.61583 4.63980 4.71656 4.74222 4.79533 4.87900 5.06951 5.09069 5.15431 5.19032 5.25520 5.35953 5.54058 5.73376 5.90805 6.02086 6.04475 6.21307 6.40320 6.61118 6.75161 6.89957 7.05641 7.41533 7.98932 8.77117 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034212 B = 0.001486 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.223492 B =18832.684024 C =19139.832321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 H 0.140 0.860 4 C 0.499 3.501 5 O -0.574 6.574 6 N -0.707 5.707 7 C 0.128 3.872 8 C -0.115 4.115 9 C 0.058 3.942 10 N -0.539 5.539 11 C 0.023 3.977 12 C 0.053 3.947 13 C 0.451 3.549 14 O -0.604 6.604 15 N -0.593 5.593 16 C -0.327 4.327 17 H 0.056 0.944 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.963 3.037 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.232 1.232 24 N -0.366 5.366 25 C 0.060 3.940 26 C -0.286 4.286 27 C 0.038 3.962 28 N -0.338 5.338 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.419 0.581 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.029 0.971 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.120 0.880 44 H 0.389 0.611 45 H 0.278 0.722 46 H 0.195 0.805 47 H 0.168 0.832 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 -4.246 33.155 33.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.158 0.842 4 C 0.284 3.716 5 O -0.453 6.453 6 N -0.361 5.361 7 C 0.004 3.996 8 C -0.153 4.153 9 C -0.070 4.070 10 N -0.263 5.263 11 C -0.125 4.125 12 C -0.078 4.078 13 C 0.239 3.761 14 O -0.488 6.488 15 N -0.236 5.236 16 C -0.456 4.456 17 H 0.074 0.926 18 C -0.213 4.213 19 N -0.576 5.576 20 Si 0.783 3.217 21 H -0.182 1.182 22 H -0.201 1.201 23 H -0.156 1.156 24 N -0.148 5.148 25 C -0.085 4.085 26 C -0.314 4.314 27 C -0.148 4.148 28 N -0.159 5.159 29 H 0.132 0.868 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.257 0.743 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.212 0.788 47 H 0.186 0.814 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.310 -3.135 32.444 32.879 hybrid contribution 0.713 -1.012 -0.721 1.433 sum 5.023 -4.147 31.722 32.384 Atomic orbital electron populations 1.22220 0.87478 1.05035 1.06541 1.21351 0.98265 0.97507 0.79360 0.84234 1.21193 0.80056 0.84525 0.85790 1.90760 1.39164 1.28184 1.87194 1.45818 1.53268 1.32475 1.04505 1.21217 0.98850 0.96406 0.83122 1.21635 1.02505 0.99910 0.91231 1.22094 0.98050 0.98521 0.88360 1.61496 1.60203 1.03109 1.01511 1.22474 0.96231 0.90563 1.03212 1.21843 0.98952 0.98665 0.88359 1.20904 0.84927 0.85946 0.84312 1.90511 1.45040 1.28542 1.84746 1.42055 1.46176 1.27747 1.07574 1.19002 1.27548 1.11474 0.87591 0.92576 1.26079 0.98806 1.02383 0.94000 1.69799 1.43929 1.42592 1.01248 0.85385 0.79289 0.77669 0.79308 1.18162 1.20143 1.15577 1.48431 1.19204 1.25226 1.21952 1.22959 1.00614 0.90242 0.94703 1.21858 0.99031 1.06683 1.03878 1.24396 0.99869 0.93651 0.96843 1.77275 1.03425 1.26380 1.08817 0.86768 0.90734 0.89057 0.74278 0.92374 0.91604 0.89939 0.90401 0.93682 0.89417 0.95215 0.93079 0.89752 0.90700 0.86178 0.77589 0.91203 0.78811 0.81443 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 8.73 71.98 0.63 0.01 16 2 C 0.14 1.68 3.73 44.24 0.17 1.85 16 3 H 0.14 1.29 8.14 -2.38 -0.02 1.27 16 4 C 0.50 8.56 7.22 87.66 0.63 9.19 16 5 O -0.57 -15.97 16.42 -3.04 -0.05 -16.02 16 6 N -0.71 -8.14 5.45 -463.05 -2.52 -10.67 16 7 C 0.13 1.82 5.67 86.38 0.49 2.31 16 8 C -0.11 -1.60 5.25 30.59 0.16 -1.44 16 9 C 0.06 1.05 4.96 86.30 0.43 1.48 16 10 N -0.54 -14.82 4.50 -927.02 -4.17 -18.99 16 11 C 0.02 0.65 8.96 127.69 1.14 1.79 16 12 C 0.05 1.57 5.45 85.56 0.47 2.03 16 13 C 0.45 19.94 7.47 87.66 0.66 20.59 16 14 O -0.60 -32.57 13.91 -3.06 -0.04 -32.61 16 15 N -0.59 -27.62 5.09 -306.98 -1.56 -29.18 16 16 C -0.33 -18.98 10.16 84.04 0.85 -18.13 16 17 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 18 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 19 N -0.93 -56.08 13.96 21.66 0.30 -55.78 16 20 Si 0.96 38.50 27.74 68.60 1.90 40.40 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 24 N -0.37 -6.64 3.02 -331.06 -1.00 -7.63 16 25 C 0.06 0.92 10.57 83.54 0.88 1.80 16 26 C -0.29 -4.36 10.80 21.99 0.24 -4.12 16 27 C 0.04 0.68 12.03 85.24 1.02 1.70 16 28 N -0.34 -7.63 12.58 -57.02 -0.72 -8.34 16 29 H 0.11 -0.08 7.56 -2.39 -0.02 -0.10 16 30 H 0.07 0.33 7.16 -2.38 -0.02 0.31 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.42 2.06 7.89 -92.71 -0.73 1.33 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.03 6.55 -2.39 -0.02 1.02 16 37 H 0.04 0.75 8.12 -2.39 -0.02 0.73 16 38 H 0.09 1.43 7.93 -2.38 -0.02 1.41 16 39 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 1.92 5.82 -2.39 -0.01 1.91 16 41 H 0.08 1.93 6.47 -2.39 -0.02 1.92 16 42 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 43 H 0.12 2.87 7.93 -2.39 -0.02 2.85 16 44 H 0.39 14.97 5.76 -92.71 -0.53 14.43 16 45 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 46 H 0.20 1.70 7.26 -2.91 -0.02 1.68 16 47 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.20 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -89.65 397.16 0.04 -89.61 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.34 Total: 30.47 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 8.24 Total: 18.75 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -9.67 Total: -130.60 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.09 Total: -48.63 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.90 Total: 40.40 kcal Total: -89.65 0.04 -89.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234261731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.340 kcal (2) G-P(sol) polarization free energy of solvation -89.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds