Wall clock time and date at job start Tue Mar 31 2020 20:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.46983 * 179.97438 * 9 8 7 11 11 C 1.46900 * 110.99842 * 66.04719 * 10 9 8 12 12 C 1.46899 * 111.00128 * 190.00269 * 10 9 8 13 13 C 1.50703 * 109.47046 * 170.00323 * 12 10 9 14 14 O 1.21292 * 120.00219 * 359.97438 * 13 12 10 15 15 N 1.34779 * 120.00089 * 180.02562 * 13 12 10 16 16 C 1.37089 * 120.00260 * 179.97438 * 15 13 12 17 17 H 1.08008 * 120.00029 * 0.02562 * 16 15 13 18 18 C 1.38948 * 120.00031 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00404 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99756 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47311 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46985 * 120.00578 * 20 18 16 23 23 H 1.48496 * 109.46954 * 239.99699 * 20 18 16 24 24 N 1.46509 * 109.46641 * 240.00600 * 2 1 3 25 25 C 1.34949 * 126.03829 * 324.99815 * 24 2 1 26 26 C 1.35312 * 107.74637 * 179.97438 * 25 24 2 27 27 C 1.39873 * 107.91842 * 359.97438 * 26 25 24 28 28 N 1.30840 * 108.20173 * 359.74594 * 27 26 25 29 29 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 30 30 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 33 33 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 34 34 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 35 35 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 36 36 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 37 37 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 38 38 H 1.09007 * 109.47288 * 60.00489 * 9 8 7 39 39 H 1.08999 * 109.47291 * 60.00141 * 11 10 9 40 40 H 1.09003 * 109.47182 * 180.02562 * 11 10 9 41 41 H 1.08997 * 109.47165 * 299.99892 * 11 10 9 42 42 H 1.08998 * 109.47091 * 289.99713 * 12 10 9 43 43 H 1.08996 * 109.47059 * 50.00124 * 12 10 9 44 44 H 0.97003 * 119.99243 * 359.97438 * 15 13 12 45 45 H 0.96997 * 120.00472 * 179.97438 * 19 18 16 46 46 H 1.08001 * 126.12423 * 0.02562 * 25 24 2 47 47 H 1.07995 * 126.04093 * 180.02562 * 26 25 24 48 48 H 1.08003 * 125.89843 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 6 2.1801 -0.9520 6.1490 10 7 1.6866 -0.2624 7.3485 11 6 0.2248 -0.3652 7.4509 12 6 2.3370 -0.7813 8.5592 13 6 1.9965 0.1033 9.7308 14 8 1.2827 1.0711 9.5727 15 7 2.4860 -0.1804 10.9541 16 6 2.1767 0.6245 12.0198 17 1 1.5404 1.4859 11.8792 18 6 2.6809 0.3317 13.2810 19 7 3.4547 -0.7165 13.4522 20 14 2.2588 1.4283 14.7333 21 1 1.3773 2.5335 14.2793 22 1 1.5564 0.6291 15.7692 23 1 3.5070 1.9933 15.3060 24 7 2.0183 -0.6905 -1.1963 25 6 1.4401 -1.7558 -1.7897 26 6 2.1959 -2.0920 -2.8605 27 6 3.2726 -1.2014 -2.9240 28 7 3.1639 -0.3573 -1.9303 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.1490 0.5383 2.5436 33 1 1.8264 -1.9720 3.6462 34 1 3.2802 -0.9450 3.6548 35 1 2.0395 0.8009 4.9042 36 1 0.5857 -0.2261 4.8957 37 1 1.8159 -1.9793 6.1445 38 1 3.2701 -0.9529 6.1534 39 1 -0.0625 -1.4151 7.5084 40 1 -0.1141 0.1541 8.3474 41 1 -0.2339 0.0895 6.5729 42 1 1.9854 -1.7944 8.7546 43 1 3.4172 -0.7931 8.4146 44 1 3.0571 -0.9542 11.0803 45 1 3.8070 -0.9207 14.3326 46 1 0.5356 -2.2506 -1.4681 47 1 2.0017 -2.9040 -3.5456 48 1 4.0561 -1.2071 -3.6673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234261732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:28 Heat of formation + Delta-G solvation = 17.682916 kcal Electronic energy + Delta-G solvation = -27783.863922 eV Core-core repulsion = 23683.158249 eV Total energy + Delta-G solvation = -4100.705673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64798 -40.00056 -38.70684 -37.01863 -35.38453 -35.07824 -33.87907 -31.79184 -31.23772 -30.39064 -29.81320 -27.91039 -26.73526 -25.34622 -24.61152 -22.93640 -21.77244 -21.38276 -21.03688 -20.07923 -19.17308 -18.12105 -17.83557 -17.53642 -16.41461 -16.27638 -15.82223 -15.55535 -15.18871 -14.91696 -14.71567 -14.57840 -14.41897 -14.08416 -13.94163 -13.66571 -13.49426 -13.42188 -13.22213 -13.07552 -12.86230 -12.43570 -12.23184 -12.14258 -11.93223 -11.77685 -11.50100 -11.29509 -11.28402 -10.99633 -10.95564 -10.79735 -10.48249 -10.35491 -10.23805 -9.69434 -9.51170 -9.49913 -8.89675 -8.48139 -7.99716 -7.88594 -6.43045 -3.83904 1.50711 1.95806 2.09800 2.59809 2.76264 3.15105 3.25833 3.32770 3.86907 3.88978 3.94681 4.09829 4.22100 4.24767 4.45037 4.62457 4.73413 4.79300 4.85098 4.95220 4.97399 5.05679 5.19942 5.23692 5.29295 5.33977 5.42178 5.48252 5.53231 5.65103 5.69643 5.72006 5.85822 5.90353 5.94984 5.99272 6.05790 6.26582 6.33485 6.51206 6.60092 6.98962 7.22388 7.34964 7.39785 7.54060 7.69946 8.05221 8.60461 9.16903 9.53207 10.04882 10.74754 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040987 B = 0.001422 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.985617 B =19688.662447 C =19950.617460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.129 0.871 4 C 0.499 3.501 5 O -0.520 6.520 6 N -0.722 5.722 7 C 0.121 3.879 8 C -0.127 4.127 9 C 0.058 3.942 10 N -0.519 5.519 11 C 0.020 3.980 12 C 0.046 3.954 13 C 0.444 3.556 14 O -0.578 6.578 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 N -0.356 5.356 25 C 0.067 3.933 26 C -0.274 4.274 27 C 0.048 3.952 28 N -0.292 5.292 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.403 0.597 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.014 0.986 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.170 0.830 47 H 0.147 0.853 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.996 -2.847 -29.054 29.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.147 0.853 4 C 0.283 3.717 5 O -0.394 6.394 6 N -0.375 5.375 7 C -0.003 4.003 8 C -0.165 4.165 9 C -0.071 4.071 10 N -0.243 5.243 11 C -0.128 4.128 12 C -0.086 4.086 13 C 0.229 3.771 14 O -0.463 6.463 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 N -0.139 5.139 25 C -0.078 4.078 26 C -0.303 4.303 27 C -0.139 4.139 28 N -0.112 5.112 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.238 0.762 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.187 0.813 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.283 -1.416 -28.378 28.900 hybrid contribution -0.511 -1.334 0.666 1.576 sum -5.794 -2.750 -27.712 28.444 Atomic orbital electron populations 1.22173 0.90410 1.04444 1.04937 1.21083 0.96173 0.97812 0.81286 0.85297 1.20722 0.81051 0.85241 0.84726 1.90787 1.36552 1.25700 1.86401 1.45944 1.53969 1.32234 1.05389 1.21392 0.99829 0.96241 0.82850 1.21779 1.01574 1.00896 0.92276 1.22000 1.00425 0.95026 0.89678 1.61545 1.06240 1.55670 1.00797 1.22577 0.87169 0.98802 1.04215 1.21866 0.99880 0.96427 0.90396 1.19733 0.85588 0.88004 0.83754 1.90478 1.40995 1.30545 1.84244 1.41878 1.44789 1.27003 1.06431 1.19748 1.28752 1.08463 0.85872 0.87850 1.25260 0.96547 0.97142 0.98991 1.69616 1.33513 1.26725 1.24439 0.85804 0.78273 0.79737 0.80550 1.19221 1.20793 1.20745 1.48168 1.19986 1.24490 1.21229 1.22412 0.99838 0.90765 0.94805 1.21479 0.99193 1.06320 1.03341 1.23893 0.99075 0.93844 0.97076 1.77369 1.02165 1.24337 1.07330 0.89942 0.90803 0.89121 0.76242 0.91337 0.91075 0.90035 0.91011 0.94867 0.90560 0.96799 0.88594 0.92146 0.93444 0.89360 0.77491 0.91919 0.81323 0.83478 0.79970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 8.73 37.16 0.32 -0.21 16 2 C 0.14 0.99 3.73 -69.08 -0.26 0.73 16 3 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.50 4.74 7.22 -10.99 -0.08 4.66 16 5 O -0.52 -7.47 16.42 5.55 0.09 -7.38 16 6 N -0.72 -5.18 5.45 -60.29 -0.33 -5.51 16 7 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 8 C -0.13 -1.14 5.25 -26.73 -0.14 -1.28 16 9 C 0.06 0.67 4.96 -3.82 -0.02 0.65 16 10 N -0.52 -8.19 4.50 -244.37 -1.10 -9.28 16 11 C 0.02 0.31 8.96 60.06 0.54 0.85 16 12 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 13 C 0.44 10.31 7.47 -10.98 -0.08 10.22 16 14 O -0.58 -15.26 13.91 5.55 0.08 -15.19 16 15 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 16 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 17 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 20 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 N -0.36 -3.45 3.02 -55.99 -0.17 -3.62 16 25 C 0.07 0.56 10.57 -17.22 -0.18 0.38 16 26 C -0.27 -2.27 10.80 -40.01 -0.43 -2.70 16 27 C 0.05 0.44 12.03 -17.36 -0.21 0.23 16 28 N -0.29 -3.38 12.58 30.63 0.39 -2.99 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.25 7.16 -51.93 -0.37 -0.12 16 31 H 0.09 0.12 7.56 -51.93 -0.39 -0.27 16 32 H 0.40 1.69 7.89 -40.82 -0.32 1.37 16 33 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 37 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.10 1.82 5.83 -51.93 -0.30 1.52 16 41 H 0.06 0.77 6.47 -51.93 -0.34 0.43 16 42 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 43 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 44 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.17 0.91 7.26 -52.49 -0.38 0.53 16 47 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.18 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -36.72 400.27 -7.53 -44.25 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.33 Total: 8.31 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -0.83 Total: 7.42 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.55 Total: -59.29 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.17 Total: -22.57 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.72 -7.53 -44.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234261732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.929 kcal (2) G-P(sol) polarization free energy of solvation -36.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds