Wall clock time and date at job start Tue Mar 31 2020 20:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.46983 * 179.97438 * 9 8 7 11 11 C 1.46900 * 110.99842 * 66.04719 * 10 9 8 12 12 C 1.46899 * 111.00128 * 190.00269 * 10 9 8 13 13 C 1.50703 * 109.47046 * 170.00323 * 12 10 9 14 14 O 1.21292 * 120.00219 * 359.97438 * 13 12 10 15 15 N 1.34779 * 120.00089 * 180.02562 * 13 12 10 16 16 C 1.37089 * 120.00260 * 179.97438 * 15 13 12 17 17 H 1.08008 * 120.00029 * 0.02562 * 16 15 13 18 18 C 1.38948 * 120.00031 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00404 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99756 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47311 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46985 * 120.00578 * 20 18 16 23 23 H 1.48496 * 109.46954 * 239.99699 * 20 18 16 24 24 N 1.46509 * 109.46641 * 240.00600 * 2 1 3 25 25 C 1.34949 * 126.03829 * 324.99815 * 24 2 1 26 26 C 1.35312 * 107.74637 * 179.97438 * 25 24 2 27 27 C 1.39873 * 107.91842 * 359.97438 * 26 25 24 28 28 N 1.30840 * 108.20173 * 359.74594 * 27 26 25 29 29 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 30 30 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 33 33 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 34 34 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 35 35 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 36 36 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 37 37 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 38 38 H 1.09007 * 109.47288 * 60.00489 * 9 8 7 39 39 H 1.08999 * 109.47291 * 60.00141 * 11 10 9 40 40 H 1.09003 * 109.47182 * 180.02562 * 11 10 9 41 41 H 1.08997 * 109.47165 * 299.99892 * 11 10 9 42 42 H 1.08998 * 109.47091 * 289.99713 * 12 10 9 43 43 H 1.08996 * 109.47059 * 50.00124 * 12 10 9 44 44 H 0.97003 * 119.99243 * 359.97438 * 15 13 12 45 45 H 0.96997 * 120.00472 * 179.97438 * 19 18 16 46 46 H 1.08001 * 126.12423 * 0.02562 * 25 24 2 47 47 H 1.07995 * 126.04093 * 180.02562 * 26 25 24 48 48 H 1.08003 * 125.89843 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 6 2.1801 -0.9520 6.1490 10 7 1.6866 -0.2624 7.3485 11 6 0.2248 -0.3652 7.4509 12 6 2.3370 -0.7813 8.5592 13 6 1.9965 0.1033 9.7308 14 8 1.2827 1.0711 9.5727 15 7 2.4860 -0.1804 10.9541 16 6 2.1767 0.6245 12.0198 17 1 1.5404 1.4859 11.8792 18 6 2.6809 0.3317 13.2810 19 7 3.4547 -0.7165 13.4522 20 14 2.2588 1.4283 14.7333 21 1 1.3773 2.5335 14.2793 22 1 1.5564 0.6291 15.7692 23 1 3.5070 1.9933 15.3060 24 7 2.0183 -0.6905 -1.1963 25 6 1.4401 -1.7558 -1.7897 26 6 2.1959 -2.0920 -2.8605 27 6 3.2726 -1.2014 -2.9240 28 7 3.1639 -0.3573 -1.9303 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.1490 0.5383 2.5436 33 1 1.8264 -1.9720 3.6462 34 1 3.2802 -0.9450 3.6548 35 1 2.0395 0.8009 4.9042 36 1 0.5857 -0.2261 4.8957 37 1 1.8159 -1.9793 6.1445 38 1 3.2701 -0.9529 6.1534 39 1 -0.0625 -1.4151 7.5084 40 1 -0.1141 0.1541 8.3474 41 1 -0.2339 0.0895 6.5729 42 1 1.9854 -1.7944 8.7546 43 1 3.4172 -0.7931 8.4146 44 1 3.0571 -0.9542 11.0803 45 1 3.8070 -0.9207 14.3326 46 1 0.5356 -2.2506 -1.4681 47 1 2.0017 -2.9040 -3.5456 48 1 4.0561 -1.2071 -3.6673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234261732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:27 Heat of formation + Delta-G solvation = -11.164042 kcal Electronic energy + Delta-G solvation = -27785.114820 eV Core-core repulsion = 23683.158249 eV Total energy + Delta-G solvation = -4101.956571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27065 -40.74432 -40.35645 -38.29618 -36.35626 -35.81583 -35.62594 -33.28399 -32.64267 -31.03093 -30.37121 -29.33720 -27.68290 -26.67653 -25.66411 -23.99982 -22.47035 -22.06135 -21.92155 -20.96872 -20.75307 -19.84742 -18.74315 -18.17143 -17.80982 -17.06965 -16.87715 -16.58633 -16.52110 -16.23133 -15.88013 -15.67688 -15.35829 -15.21606 -15.03070 -14.78797 -14.59028 -14.43942 -13.79211 -13.74491 -13.51890 -13.47839 -13.36991 -13.25022 -13.02655 -12.86913 -12.72454 -12.61487 -12.50214 -12.37875 -12.33097 -12.10739 -11.65708 -11.65491 -11.45535 -11.24871 -10.37771 -10.27212 -10.22137 -9.99039 -9.52421 -9.19379 -8.45870 -5.94412 0.87394 1.36964 1.37554 1.42231 1.43862 1.56309 1.97186 2.06636 2.11424 2.29610 2.80455 3.21240 3.40342 3.43956 3.61056 3.80270 3.95565 3.96663 4.03512 4.12806 4.14052 4.31275 4.40453 4.47857 4.54699 4.56898 4.60960 4.61935 4.63985 4.71804 4.75424 4.79331 4.88014 5.06609 5.09420 5.15412 5.18564 5.25939 5.35393 5.42274 5.73386 5.89077 6.04737 6.08240 6.23755 6.40500 6.61758 6.75438 7.05804 7.14198 7.57875 8.13584 8.71787 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040987 B = 0.001422 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.985617 B =19688.662447 C =19950.617460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 H 0.140 0.860 4 C 0.499 3.501 5 O -0.575 6.575 6 N -0.707 5.707 7 C 0.128 3.872 8 C -0.113 4.113 9 C 0.057 3.943 10 N -0.537 5.537 11 C 0.024 3.976 12 C 0.056 3.944 13 C 0.441 3.559 14 O -0.613 6.613 15 N -0.576 5.576 16 C -0.331 4.331 17 H 0.080 0.920 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.272 1.272 24 N -0.366 5.366 25 C 0.061 3.939 26 C -0.286 4.286 27 C 0.038 3.962 28 N -0.339 5.339 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.420 0.580 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.196 0.804 47 H 0.168 0.832 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.001 -3.053 -29.898 30.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 H 0.157 0.843 4 C 0.284 3.716 5 O -0.454 6.454 6 N -0.360 5.360 7 C 0.004 3.996 8 C -0.151 4.151 9 C -0.071 4.071 10 N -0.261 5.261 11 C -0.123 4.123 12 C -0.075 4.075 13 C 0.229 3.771 14 O -0.499 6.499 15 N -0.214 5.214 16 C -0.461 4.461 17 H 0.098 0.902 18 C -0.213 4.213 19 N -0.563 5.563 20 Si 0.816 3.184 21 H -0.197 1.197 22 H -0.197 1.197 23 H -0.197 1.197 24 N -0.148 5.148 25 C -0.085 4.085 26 C -0.315 4.315 27 C -0.148 4.148 28 N -0.160 5.160 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.258 0.742 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.125 0.875 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.213 0.787 47 H 0.186 0.814 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.303 -1.605 -29.229 29.944 hybrid contribution -0.212 -1.281 0.869 1.563 sum -6.515 -2.886 -28.360 29.241 Atomic orbital electron populations 1.22221 0.87358 1.05061 1.06575 1.21352 0.98356 0.97475 0.79312 0.84294 1.21207 0.80055 0.84522 0.85794 1.90761 1.39132 1.28265 1.87196 1.45802 1.53384 1.32351 1.04455 1.21208 0.98993 0.96224 0.83184 1.21622 1.02174 1.00249 0.91030 1.22089 1.00768 0.95619 0.88655 1.61512 1.06445 1.56921 1.01252 1.22475 0.87164 0.99306 1.03389 1.21740 1.01229 0.95635 0.88870 1.20786 0.83880 0.87919 0.84533 1.90456 1.42154 1.32331 1.84976 1.41957 1.45491 1.27085 1.06820 1.19701 1.29912 1.08928 0.87546 0.90230 1.26027 0.96032 0.98329 1.00914 1.69677 1.33731 1.27550 1.25341 0.84874 0.78227 0.77923 0.77332 1.19697 1.19678 1.19741 1.48420 1.19639 1.25051 1.21700 1.22962 1.00561 0.90358 0.94606 1.21856 0.98912 1.06774 1.03915 1.24396 0.99853 0.93549 0.96985 1.77280 1.03849 1.26104 1.08753 0.89050 0.90667 0.86698 0.74232 0.91649 0.92492 0.90334 0.89737 0.93634 0.90171 0.95426 0.92873 0.89460 0.91615 0.87461 0.77105 0.91376 0.78734 0.81416 0.77892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 8.73 71.98 0.63 0.02 16 2 C 0.14 1.75 3.73 44.24 0.17 1.92 16 3 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.50 8.93 7.22 87.66 0.63 9.56 16 5 O -0.57 -16.51 16.42 -3.04 -0.05 -16.56 16 6 N -0.71 -8.72 5.45 -463.05 -2.52 -11.24 16 7 C 0.13 1.99 5.67 86.38 0.49 2.48 16 8 C -0.11 -1.74 5.25 30.59 0.16 -1.58 16 9 C 0.06 1.18 4.96 86.30 0.43 1.60 16 10 N -0.54 -16.04 4.50 -927.05 -4.17 -20.21 16 11 C 0.02 0.71 8.96 127.69 1.14 1.85 16 12 C 0.06 1.91 5.45 85.56 0.47 2.37 16 13 C 0.44 20.72 7.47 87.66 0.66 21.38 16 14 O -0.61 -33.14 13.91 -3.07 -0.04 -33.19 16 15 N -0.58 -29.41 5.29 -306.98 -1.62 -31.03 16 16 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 17 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 18 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 19 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 20 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 N -0.37 -6.82 3.02 -331.05 -1.00 -7.82 16 25 C 0.06 0.94 10.57 83.54 0.88 1.83 16 26 C -0.29 -4.46 10.80 21.99 0.24 -4.23 16 27 C 0.04 0.70 12.03 85.24 1.03 1.72 16 28 N -0.34 -7.87 12.58 -57.02 -0.72 -8.59 16 29 H 0.09 0.25 8.14 -2.39 -0.02 0.24 16 30 H 0.07 0.31 7.16 -2.39 -0.02 0.29 16 31 H 0.11 -0.11 7.56 -2.39 -0.02 -0.13 16 32 H 0.42 2.31 7.89 -92.71 -0.73 1.58 16 33 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.12 6.55 -2.38 -0.02 1.10 16 37 H 0.05 0.86 8.12 -2.39 -0.02 0.84 16 38 H 0.08 1.61 7.93 -2.38 -0.02 1.60 16 39 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 2.03 5.83 -2.39 -0.01 2.01 16 41 H 0.09 2.00 6.47 -2.39 -0.02 1.99 16 42 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 43 H 0.11 3.22 7.93 -2.39 -0.02 3.20 16 44 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 46 H 0.20 1.72 7.26 -2.91 -0.02 1.69 16 47 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -82.20 400.27 -0.09 -82.30 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -0.48 Total: 30.22 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 8.20 Total: 20.77 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -9.75 Total: -128.32 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.09 Total: -49.75 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -82.20 -0.09 -82.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234261732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.132 kcal (2) G-P(sol) polarization free energy of solvation -82.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds