Wall clock time and date at job start Tue Mar 31 2020 19:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46644 * 2 1 4 4 C 1.50699 * 109.47121 * 119.99985 * 2 1 3 5 5 H 1.08000 * 119.99830 * 120.00511 * 4 2 1 6 6 C 1.37873 * 119.99971 * 300.00070 * 4 2 1 7 7 N 1.31516 * 120.00226 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99936 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46842 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47299 * 119.99922 * 8 6 4 11 11 H 1.48504 * 109.46808 * 240.00291 * 8 6 4 12 12 N 1.46495 * 109.46985 * 240.00286 * 2 1 3 13 13 C 1.46504 * 119.99941 * 299.99575 * 12 2 1 14 14 C 1.34779 * 119.99964 * 120.00080 * 12 2 1 15 15 O 1.21353 * 120.00002 * 3.63316 * 14 12 2 16 16 C 1.49341 * 119.99774 * 183.63309 * 14 12 2 17 17 O 1.21387 * 120.00473 * 354.16553 * 16 14 12 18 18 N 1.34779 * 119.99838 * 174.16743 * 16 14 12 19 19 C 1.39937 * 119.99974 * 179.97438 * 18 16 14 20 20 C 1.40461 * 125.97765 * 359.97438 * 19 18 16 21 21 C 1.35219 * 107.86081 * 179.97438 * 20 19 18 22 22 N 1.34984 * 107.87904 * 0.26518 * 21 20 19 23 23 C 1.46503 * 125.97072 * 179.73558 * 22 21 20 24 24 C 1.52998 * 109.47252 * 124.99723 * 23 22 21 25 25 N 1.46898 * 109.47498 * 179.97438 * 24 23 22 26 26 C 1.46903 * 110.99624 * 66.04513 * 25 24 23 27 27 C 1.46898 * 111.00243 * 190.00220 * 25 24 23 28 28 N 1.31273 * 125.97979 * 179.97438 * 19 18 16 29 29 H 1.08996 * 109.47198 * 59.99792 * 1 2 3 30 30 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47154 * 299.99876 * 1 2 3 32 32 H 0.97005 * 120.00065 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47232 * 263.99359 * 13 12 2 34 34 H 1.09000 * 109.47062 * 23.99587 * 13 12 2 35 35 H 1.09001 * 109.46879 * 143.99550 * 13 12 2 36 36 H 0.97001 * 120.00277 * 359.97438 * 18 16 14 37 37 H 1.07992 * 126.07176 * 359.92894 * 20 19 18 38 38 H 1.08002 * 126.05801 * 180.02562 * 21 20 19 39 39 H 1.08991 * 109.46847 * 244.99870 * 23 22 21 40 40 H 1.09003 * 109.47136 * 4.99998 * 23 22 21 41 41 H 1.09003 * 109.47160 * 300.00260 * 24 23 22 42 42 H 1.09003 * 109.47224 * 59.99721 * 24 23 22 43 43 H 1.09001 * 109.47249 * 60.00268 * 26 25 24 44 44 H 1.09000 * 109.46614 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.47138 * 299.99906 * 26 25 24 46 46 H 1.08995 * 109.47118 * 60.00085 * 27 25 24 47 47 H 1.09003 * 109.46800 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.46871 * 300.00082 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.1475 -2.2864 3.6037 10 1 3.1472 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8164 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.1409 1.1053 -1.8591 16 6 3.2239 -0.7137 -3.3422 17 8 2.9663 -1.8867 -3.5185 18 7 3.8987 -0.0232 -4.2827 19 6 4.3027 -0.6588 -5.4621 20 6 4.0738 -2.0042 -5.7946 21 6 4.6172 -2.2287 -7.0123 22 7 5.1752 -1.0750 -7.4362 23 6 5.8782 -0.8747 -8.7058 24 6 5.2387 0.2897 -9.4647 25 7 5.9440 0.4909 -10.7375 26 6 5.7518 -0.6576 -11.6331 27 6 5.5181 1.7395 -11.3837 28 7 4.9621 -0.1021 -6.4513 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.7095 1.1618 3.4844 33 1 2.4675 -2.7351 -1.0661 34 1 0.7431 -2.3283 -0.8950 35 1 1.5193 -2.2596 -2.4954 36 1 4.1043 0.9142 -4.1420 37 1 3.5563 -2.7305 -5.1856 38 1 4.6097 -3.1661 -7.5487 39 1 6.9261 -0.6484 -8.5090 40 1 5.8090 -1.7817 -9.3065 41 1 4.1907 0.0633 -9.6614 42 1 5.3079 1.1966 -8.8641 43 1 4.6889 -0.7842 -11.8388 44 1 6.2848 -0.4826 -12.5677 45 1 6.1397 -1.5583 -11.1572 46 1 5.7360 2.5813 -10.7266 47 1 6.0554 1.8635 -12.3240 48 1 4.4467 1.6997 -11.5803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255498923.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:30 Heat of formation + Delta-G solvation = 48.770676 kcal Electronic energy + Delta-G solvation = -28807.165070 eV Core-core repulsion = 24707.807463 eV Total energy + Delta-G solvation = -4099.357606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53111 -40.23932 -38.28289 -37.94720 -35.94780 -34.88407 -32.97573 -32.70196 -30.24526 -29.56085 -28.72593 -28.10880 -26.35596 -25.44692 -25.17308 -24.08709 -22.00888 -21.82997 -20.92166 -20.09385 -19.06673 -17.62475 -17.17127 -16.66457 -16.40402 -16.16763 -15.82605 -15.67572 -15.64226 -15.16411 -14.99868 -14.60441 -14.39634 -14.04474 -13.66455 -13.40987 -13.16369 -13.10184 -12.92861 -12.63476 -12.52478 -12.38712 -12.21426 -12.11715 -11.85532 -11.59616 -11.48978 -11.10575 -10.94204 -10.82717 -10.80460 -10.72645 -10.57986 -10.24352 -10.19794 -9.23140 -8.96563 -8.95880 -8.81285 -8.47537 -8.33587 -7.74602 -6.11627 -4.19657 1.43627 1.92530 1.96336 2.79132 2.88769 3.25707 3.33812 3.37839 3.49307 3.72330 3.99756 4.16342 4.37216 4.47614 4.58587 4.64231 4.79719 4.80722 4.82954 4.95944 5.08267 5.14064 5.20347 5.33562 5.38862 5.42294 5.49900 5.54269 5.68879 5.95088 6.06649 6.29336 6.37687 6.41912 6.52624 6.68523 6.73497 6.75123 6.89337 6.92653 6.97580 7.22612 7.35019 7.65289 7.70900 7.86882 7.98917 8.08477 8.33368 8.58226 8.85737 9.46626 10.93864 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.001919 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.028280 B =14585.313295 C =14880.050742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.253 3.747 3 H 0.067 0.933 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.549 5.549 13 C 0.071 3.929 14 C 0.497 3.503 15 O -0.533 6.533 16 C 0.519 3.481 17 O -0.493 6.493 18 N -0.615 5.615 19 C 0.303 3.697 20 C -0.264 4.264 21 C 0.061 3.939 22 N -0.370 5.370 23 C 0.144 3.856 24 C 0.042 3.958 25 N -0.546 5.546 26 C 0.016 3.984 27 C 0.025 3.975 28 N -0.318 5.318 29 H 0.014 0.986 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.264 0.736 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.427 0.573 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.092 0.908 43 H 0.028 0.972 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 -5.034 -26.563 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.154 3.846 3 H 0.085 0.915 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.280 5.280 13 C -0.072 4.072 14 C 0.277 3.723 15 O -0.411 6.411 16 C 0.301 3.699 17 O -0.365 6.365 18 N -0.265 5.265 19 C 0.047 3.953 20 C -0.294 4.294 21 C -0.085 4.085 22 N -0.154 5.154 23 C 0.022 3.978 24 C -0.086 4.086 25 N -0.270 5.270 26 C -0.132 4.132 27 C -0.123 4.123 28 N -0.149 5.149 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.265 0.735 37 H 0.192 0.808 38 H 0.193 0.807 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 7.607 -4.068 -26.775 28.130 hybrid contribution -0.785 -0.870 0.990 1.534 sum 6.822 -4.938 -25.785 27.125 Atomic orbital electron populations 1.22118 0.97522 0.99847 1.01149 1.19205 0.91302 0.94645 0.79430 0.91478 1.21312 1.32041 1.13142 0.89938 0.91929 1.24890 0.94868 0.94972 0.99022 1.69882 1.36299 1.22541 1.23820 0.86387 0.78620 0.79598 0.82500 1.19723 1.20875 1.20882 1.48260 1.45363 1.12601 1.21760 1.22170 1.01091 0.81219 1.02713 1.19420 0.82070 0.86723 0.84079 1.90739 1.55776 1.17690 1.76934 1.20940 0.77645 0.86701 0.84578 1.90573 1.51918 1.15725 1.78326 1.42425 1.54291 1.15597 1.14228 1.19166 0.96550 0.92020 0.87578 1.21915 1.12611 0.96396 0.98488 1.22592 0.97561 0.91791 0.96514 1.48109 1.45162 1.06992 1.15171 1.21605 0.96652 0.99737 0.79777 1.22385 0.95548 0.99852 0.90852 1.61909 1.57431 1.03422 1.04227 1.22518 0.99781 0.93719 0.97194 1.22388 0.98478 0.91624 0.99779 1.77368 1.25434 1.13006 0.99045 0.96731 0.94691 0.88428 0.92630 0.92847 0.91076 0.89372 0.73541 0.80832 0.80659 0.88881 0.88629 0.94085 0.88975 0.95324 0.90973 0.91138 0.90931 0.91001 0.95416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.96 37.16 0.33 -3.13 16 2 C 0.25 6.39 2.62 -69.08 -0.18 6.21 16 3 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 4 C -0.53 -14.12 8.37 -34.44 -0.29 -14.40 16 5 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.55 -11.95 2.75 -175.81 -0.48 -12.44 16 13 C 0.07 1.31 8.76 59.85 0.52 1.83 16 14 C 0.50 10.36 7.73 -11.64 -0.09 10.27 16 15 O -0.53 -12.33 15.82 5.49 0.09 -12.25 16 16 C 0.52 9.09 7.74 -11.64 -0.09 9.00 16 17 O -0.49 -8.54 10.26 5.46 0.06 -8.49 16 18 N -0.62 -9.61 5.43 -11.58 -0.06 -9.68 16 19 C 0.30 4.51 8.10 -154.54 -1.25 3.26 16 20 C -0.26 -3.52 9.60 -39.82 -0.38 -3.91 16 21 C 0.06 0.61 11.43 -17.24 -0.20 0.42 16 22 N -0.37 -3.97 3.68 -61.38 -0.23 -4.19 16 23 C 0.14 1.05 6.43 -4.04 -0.03 1.03 16 24 C 0.04 0.33 5.14 -3.83 -0.02 0.31 16 25 N -0.55 -3.64 5.02 -251.26 -1.26 -4.90 16 26 C 0.02 0.08 9.32 60.07 0.56 0.64 16 27 C 0.03 0.15 9.57 60.06 0.57 0.72 16 28 N -0.32 -4.44 12.43 31.41 0.39 -4.05 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.03 0.76 6.67 -51.93 -0.35 0.41 16 31 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.29 6.44 -51.93 -0.33 0.95 16 35 H 0.09 1.49 5.35 -51.94 -0.28 1.22 16 36 H 0.43 6.30 8.31 -40.82 -0.34 5.96 16 37 H 0.17 2.44 5.91 -52.49 -0.31 2.13 16 38 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.44 6.48 -51.93 -0.34 0.11 16 41 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 42 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 43 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 45 H 0.07 0.26 6.47 -51.93 -0.34 -0.07 16 46 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 47 H 0.07 0.34 8.12 -51.93 -0.42 -0.09 16 48 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 390.53 15.07 5.89 5.89 Total: -1.00 -31.45 390.53 -7.77 -39.22 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.13 Total: 5.10 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -0.63 Total: 13.90 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -1.02 Total: -59.30 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.14 Total: -20.73 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.45 -7.77 -39.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255498923.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.990 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds