Wall clock time and date at job start Tue Mar 31 2020 19:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46644 * 2 1 4 4 C 1.50699 * 109.47121 * 119.99985 * 2 1 3 5 5 H 1.08000 * 119.99830 * 120.00511 * 4 2 1 6 6 C 1.37873 * 119.99971 * 300.00070 * 4 2 1 7 7 N 1.31516 * 120.00226 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99936 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46842 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47299 * 119.99922 * 8 6 4 11 11 H 1.48504 * 109.46808 * 240.00291 * 8 6 4 12 12 N 1.46495 * 109.46985 * 240.00286 * 2 1 3 13 13 C 1.46504 * 119.99941 * 299.99575 * 12 2 1 14 14 C 1.34779 * 119.99964 * 120.00080 * 12 2 1 15 15 O 1.21353 * 120.00002 * 3.63316 * 14 12 2 16 16 C 1.49341 * 119.99774 * 183.63309 * 14 12 2 17 17 O 1.21387 * 120.00473 * 354.16553 * 16 14 12 18 18 N 1.34779 * 119.99838 * 174.16743 * 16 14 12 19 19 C 1.39937 * 119.99974 * 179.97438 * 18 16 14 20 20 C 1.40461 * 125.97765 * 359.97438 * 19 18 16 21 21 C 1.35219 * 107.86081 * 179.97438 * 20 19 18 22 22 N 1.34984 * 107.87904 * 0.26518 * 21 20 19 23 23 C 1.46503 * 125.97072 * 179.73558 * 22 21 20 24 24 C 1.52998 * 109.47252 * 124.99723 * 23 22 21 25 25 N 1.46898 * 109.47498 * 179.97438 * 24 23 22 26 26 C 1.46903 * 110.99624 * 66.04513 * 25 24 23 27 27 C 1.46898 * 111.00243 * 190.00220 * 25 24 23 28 28 N 1.31273 * 125.97979 * 179.97438 * 19 18 16 29 29 H 1.08996 * 109.47198 * 59.99792 * 1 2 3 30 30 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47154 * 299.99876 * 1 2 3 32 32 H 0.97005 * 120.00065 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47232 * 263.99359 * 13 12 2 34 34 H 1.09000 * 109.47062 * 23.99587 * 13 12 2 35 35 H 1.09001 * 109.46879 * 143.99550 * 13 12 2 36 36 H 0.97001 * 120.00277 * 359.97438 * 18 16 14 37 37 H 1.07992 * 126.07176 * 359.92894 * 20 19 18 38 38 H 1.08002 * 126.05801 * 180.02562 * 21 20 19 39 39 H 1.08991 * 109.46847 * 244.99870 * 23 22 21 40 40 H 1.09003 * 109.47136 * 4.99998 * 23 22 21 41 41 H 1.09003 * 109.47160 * 300.00260 * 24 23 22 42 42 H 1.09003 * 109.47224 * 59.99721 * 24 23 22 43 43 H 1.09001 * 109.47249 * 60.00268 * 26 25 24 44 44 H 1.09000 * 109.46614 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.47138 * 299.99906 * 26 25 24 46 46 H 1.08995 * 109.47118 * 60.00085 * 27 25 24 47 47 H 1.09003 * 109.46800 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.46871 * 300.00082 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.1475 -2.2864 3.6037 10 1 3.1472 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8164 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.1409 1.1053 -1.8591 16 6 3.2239 -0.7137 -3.3422 17 8 2.9663 -1.8867 -3.5185 18 7 3.8987 -0.0232 -4.2827 19 6 4.3027 -0.6588 -5.4621 20 6 4.0738 -2.0042 -5.7946 21 6 4.6172 -2.2287 -7.0123 22 7 5.1752 -1.0750 -7.4362 23 6 5.8782 -0.8747 -8.7058 24 6 5.2387 0.2897 -9.4647 25 7 5.9440 0.4909 -10.7375 26 6 5.7518 -0.6576 -11.6331 27 6 5.5181 1.7395 -11.3837 28 7 4.9621 -0.1021 -6.4513 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.7095 1.1618 3.4844 33 1 2.4675 -2.7351 -1.0661 34 1 0.7431 -2.3283 -0.8950 35 1 1.5193 -2.2596 -2.4954 36 1 4.1043 0.9142 -4.1420 37 1 3.5563 -2.7305 -5.1856 38 1 4.6097 -3.1661 -7.5487 39 1 6.9261 -0.6484 -8.5090 40 1 5.8090 -1.7817 -9.3065 41 1 4.1907 0.0633 -9.6614 42 1 5.3079 1.1966 -8.8641 43 1 4.6889 -0.7842 -11.8388 44 1 6.2848 -0.4826 -12.5677 45 1 6.1397 -1.5583 -11.1572 46 1 5.7360 2.5813 -10.7266 47 1 6.0554 1.8635 -12.3240 48 1 4.4467 1.6997 -11.5803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255498923.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:29 Heat of formation + Delta-G solvation = 26.918258 kcal Electronic energy + Delta-G solvation = -28808.112662 eV Core-core repulsion = 24707.807463 eV Total energy + Delta-G solvation = -4100.305198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.59052 -41.62735 -39.68448 -38.63693 -37.60816 -36.21647 -34.71896 -33.73276 -31.46719 -31.19321 -29.54211 -28.50857 -27.89814 -27.33596 -26.58564 -25.01121 -23.32172 -22.57471 -22.00044 -21.27034 -20.59094 -18.79422 -18.57735 -18.24039 -17.94172 -17.28123 -17.09642 -16.78983 -16.58685 -16.36845 -16.10229 -15.85565 -15.41863 -15.07725 -14.97145 -14.56025 -14.49341 -14.25805 -14.06935 -13.97212 -13.53082 -13.41602 -13.27012 -13.10357 -13.00175 -12.75129 -12.69486 -12.64920 -12.61835 -12.31024 -12.19191 -12.15582 -12.04785 -11.87929 -11.63861 -11.20834 -10.57000 -10.33888 -9.94850 -9.55457 -9.46263 -9.30285 -8.16682 -6.32753 0.08924 0.84480 0.94533 1.42124 1.44114 1.55262 1.68396 1.72935 2.24539 2.39669 2.57159 2.99050 3.11855 3.22826 3.54478 3.91093 3.93483 4.11963 4.22688 4.31353 4.43410 4.46272 4.50642 4.62121 4.64880 4.72220 4.74717 4.78381 4.80714 4.84882 4.88156 4.92271 4.98188 5.00313 5.04949 5.18137 5.38663 5.43384 5.59626 5.63138 5.78560 5.88311 5.94947 5.97579 6.09877 6.12987 6.40739 6.61461 6.71747 6.73301 6.95986 7.37819 8.88086 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.001919 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.028280 B =14585.313295 C =14880.050742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.257 3.743 3 H 0.024 0.976 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.966 3.034 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.558 5.558 13 C 0.075 3.925 14 C 0.492 3.508 15 O -0.564 6.564 16 C 0.531 3.469 17 O -0.490 6.490 18 N -0.608 5.608 19 C 0.277 3.723 20 C -0.293 4.293 21 C 0.089 3.911 22 N -0.362 5.362 23 C 0.141 3.859 24 C 0.050 3.950 25 N -0.553 5.553 26 C 0.014 3.986 27 C 0.024 3.976 28 N -0.342 5.342 29 H 0.026 0.974 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.266 0.734 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.427 0.573 37 H 0.166 0.834 38 H 0.227 0.773 39 H 0.094 0.906 40 H 0.134 0.866 41 H 0.034 0.966 42 H 0.067 0.933 43 H 0.028 0.972 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 -7.491 -28.667 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.156 3.844 3 H 0.042 0.958 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.288 5.288 13 C -0.066 4.066 14 C 0.273 3.727 15 O -0.445 6.445 16 C 0.312 3.688 17 O -0.363 6.363 18 N -0.257 5.257 19 C 0.023 3.977 20 C -0.324 4.324 21 C -0.058 4.058 22 N -0.146 5.146 23 C 0.020 3.980 24 C -0.079 4.079 25 N -0.278 5.278 26 C -0.134 4.134 27 C -0.124 4.124 28 N -0.173 5.173 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.265 0.735 37 H 0.183 0.817 38 H 0.243 0.757 39 H 0.112 0.888 40 H 0.152 0.848 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.103 0.897 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.422 -6.531 -28.927 30.828 hybrid contribution -0.952 -0.069 1.458 1.742 sum 7.470 -6.600 -27.470 29.222 Atomic orbital electron populations 1.21916 0.96244 1.00582 1.00579 1.18867 0.92245 0.92680 0.80625 0.95825 1.21524 1.32260 1.13175 0.90923 0.92269 1.25683 0.94981 0.95625 1.01841 1.70003 1.37012 1.23607 1.24571 0.85392 0.78248 0.78438 0.78845 1.19241 1.20978 1.19845 1.48227 1.45660 1.13786 1.21118 1.22292 1.01195 0.79214 1.03948 1.19971 0.81272 0.86430 0.85003 1.90712 1.56725 1.19173 1.77863 1.20020 0.78437 0.86507 0.83831 1.90566 1.52302 1.15273 1.78148 1.42197 1.53574 1.15516 1.14427 1.19331 0.97991 0.92921 0.87469 1.21962 1.14568 0.95593 1.00234 1.23235 0.94544 0.92818 0.95206 1.48442 1.44272 1.06648 1.15234 1.21921 0.96143 1.01324 0.78570 1.22215 0.95381 0.98993 0.91303 1.61942 1.57230 1.04360 1.04262 1.22612 1.00039 0.93418 0.97332 1.22421 0.98582 0.91280 1.00141 1.77308 1.25655 1.14659 0.99632 0.95513 0.93175 0.90704 0.92436 0.92708 0.90703 0.87561 0.73469 0.81694 0.75692 0.88750 0.84803 0.94754 0.91393 0.95344 0.90135 0.89634 0.91665 0.89687 0.95580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.96 71.98 0.64 -5.75 16 2 C 0.26 13.29 2.62 44.25 0.12 13.41 16 3 H 0.02 1.43 6.91 -2.38 -0.02 1.41 16 4 C -0.54 -29.43 8.37 25.60 0.21 -29.21 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 6 C 0.02 1.02 5.30 84.65 0.45 1.47 16 7 N -0.91 -51.68 11.32 21.45 0.24 -51.44 16 8 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 N -0.56 -24.64 2.75 -828.50 -2.28 -26.92 16 13 C 0.08 2.72 8.76 127.77 1.12 3.84 16 14 C 0.49 21.04 7.73 87.23 0.67 21.71 16 15 O -0.56 -27.31 15.82 -3.25 -0.05 -27.36 16 16 C 0.53 18.72 7.74 87.23 0.68 19.40 16 17 O -0.49 -16.67 10.26 -3.36 -0.03 -16.70 16 18 N -0.61 -19.29 5.43 -308.89 -1.68 -20.97 16 19 C 0.28 8.14 8.10 133.40 1.08 9.22 16 20 C -0.29 -7.36 9.60 22.12 0.21 -7.14 16 21 C 0.09 1.48 11.43 83.51 0.95 2.43 16 22 N -0.36 -6.86 3.68 -348.11 -1.28 -8.14 16 23 C 0.14 1.64 6.43 86.38 0.56 2.19 16 24 C 0.05 0.70 5.14 86.30 0.44 1.14 16 25 N -0.55 -6.35 5.02 -948.84 -4.76 -11.11 16 26 C 0.01 0.09 9.32 127.69 1.19 1.28 16 27 C 0.02 0.25 9.57 127.69 1.22 1.47 16 28 N -0.34 -9.29 12.43 -54.53 -0.68 -9.97 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 2.17 6.67 -2.39 -0.02 2.15 16 31 H 0.07 3.91 6.07 -2.38 -0.01 3.90 16 32 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.63 6.44 -2.39 -0.02 2.62 16 35 H 0.11 3.48 5.35 -2.50 -0.01 3.46 16 36 H 0.43 13.13 8.31 -92.71 -0.77 12.36 16 37 H 0.17 4.41 5.91 -2.91 -0.02 4.39 16 38 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.13 0.58 6.48 -2.39 -0.02 0.56 16 41 H 0.03 0.52 8.12 -2.39 -0.02 0.50 16 42 H 0.07 1.27 8.06 -2.39 -0.02 1.25 16 43 H 0.03 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.08 0.42 8.12 -2.39 -0.02 0.40 16 45 H 0.09 0.30 6.47 -2.39 -0.02 0.28 16 46 H 0.06 0.76 8.12 -2.39 -0.02 0.74 16 47 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 48 H 0.03 0.28 8.14 -2.38 -0.02 0.26 16 Total: -1.00 -69.94 390.53 1.27 -68.66 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.22 Total: 23.42 kcal Atomic # 6 Polarization: 25.92 SS G_CDS: 9.55 Total: 35.47 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -10.44 Total: -128.56 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.09 Total: -44.07 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -69.94 1.27 -68.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255498923.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.583 kcal (2) G-P(sol) polarization free energy of solvation -69.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds