Wall clock time and date at job start Tue Mar 31 2020 19:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47045 * 2 1 4 4 C 1.50697 * 109.47047 * 239.99556 * 2 1 3 5 5 H 1.08003 * 120.00370 * 245.65422 * 4 2 1 6 6 C 1.37883 * 119.99810 * 65.66458 * 4 2 1 7 7 N 1.31519 * 119.99799 * 197.82108 * 6 4 2 8 8 Si 1.86794 * 119.99975 * 18.09287 * 6 4 2 9 9 H 1.48504 * 109.46909 * 179.73043 * 8 6 4 10 10 H 1.48498 * 109.47052 * 299.72438 * 8 6 4 11 11 H 1.48496 * 109.47306 * 59.73009 * 8 6 4 12 12 N 1.46500 * 109.46867 * 119.99947 * 2 1 3 13 13 C 1.46502 * 120.00368 * 60.00028 * 12 2 1 14 14 C 1.34780 * 119.99656 * 240.00314 * 12 2 1 15 15 O 1.21363 * 120.00187 * 5.67265 * 14 12 2 16 16 C 1.49332 * 120.00029 * 185.67993 * 14 12 2 17 17 O 1.21407 * 119.99650 * 5.78320 * 16 14 12 18 18 N 1.34767 * 120.00382 * 185.78061 * 16 14 12 19 19 C 1.40475 * 120.00466 * 179.97438 * 18 16 14 20 20 C 1.40347 * 126.11143 * 0.02562 * 19 18 16 21 21 N 1.30825 * 108.20929 * 180.02562 * 20 19 18 22 22 N 1.40064 * 108.36543 * 0.02562 * 21 20 19 23 23 C 1.46497 * 125.99317 * 180.02562 * 22 21 20 24 24 C 1.52991 * 109.47173 * 304.97195 * 23 22 21 25 25 N 1.46903 * 109.47623 * 180.02562 * 24 23 22 26 26 C 1.46895 * 111.00428 * 170.00237 * 25 24 23 27 27 C 1.46905 * 110.99677 * 293.95703 * 25 24 23 28 28 C 1.35230 * 108.00967 * 359.73478 * 22 21 20 29 29 H 1.08996 * 109.47294 * 54.27692 * 1 2 3 30 30 H 1.09004 * 109.47266 * 174.27011 * 1 2 3 31 31 H 1.09000 * 109.47075 * 294.27508 * 1 2 3 32 32 H 0.96998 * 119.99618 * 355.23334 * 7 6 4 33 33 H 1.08998 * 109.46699 * 95.61433 * 13 12 2 34 34 H 1.08996 * 109.46873 * 215.61600 * 13 12 2 35 35 H 1.08999 * 109.46463 * 335.61391 * 13 12 2 36 36 H 0.97004 * 119.99711 * 359.97438 * 18 16 14 37 37 H 1.07994 * 125.89581 * 359.97438 * 20 19 18 38 38 H 1.09000 * 109.47388 * 64.97505 * 23 22 21 39 39 H 1.09001 * 109.47119 * 184.97002 * 23 22 21 40 40 H 1.09000 * 109.47832 * 299.99973 * 24 23 22 41 41 H 1.09006 * 109.47460 * 60.00317 * 24 23 22 42 42 H 1.08992 * 109.47245 * 60.00060 * 26 25 24 43 43 H 1.09001 * 109.46826 * 180.02562 * 26 25 24 44 44 H 1.09005 * 109.47039 * 299.99704 * 26 25 24 45 45 H 1.09009 * 109.47092 * 59.99712 * 27 25 24 46 46 H 1.08997 * 109.46863 * 179.97438 * 27 25 24 47 47 H 1.08997 * 109.47290 * 299.99369 * 27 25 24 48 48 H 1.08001 * 126.17956 * 180.27015 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5759 -1.6388 -1.1339 6 6 1.7982 -0.1753 -2.4794 7 7 1.9107 -0.9307 -3.5501 8 14 1.3286 1.6244 -2.6512 9 1 1.1392 1.9516 -4.0873 10 1 0.0643 1.8786 -1.9148 11 1 2.4087 2.4738 -2.0883 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0017 1.1521 1.9462 16 6 3.3950 -0.7711 3.2352 17 8 3.2743 -1.9765 3.3154 18 7 4.0723 -0.0970 4.1855 19 6 4.6381 -0.7889 5.2692 20 6 4.5774 -2.1737 5.4890 21 7 5.2180 -2.4401 6.5981 22 7 5.7082 -1.2382 7.1242 23 6 6.4839 -1.0914 8.3583 24 6 5.7131 -1.7168 9.5225 25 7 6.4905 -1.5691 10.7602 26 6 5.6884 -1.9409 11.9333 27 6 7.7304 -2.3547 10.6998 28 6 5.3455 -0.2378 6.2897 29 1 -0.3634 0.6000 -0.8343 30 1 -0.3634 -1.0226 -0.1026 31 1 -0.3633 0.4225 0.9368 32 1 2.2251 -1.8446 -3.4679 33 1 2.4644 -2.7354 1.0599 34 1 1.5260 -2.2611 2.4961 35 1 0.7394 -2.3264 0.9008 36 1 4.1691 0.8660 4.1211 37 1 4.0859 -2.8948 4.8528 38 1 7.4441 -1.5949 8.2460 39 1 6.6500 -0.0331 8.5593 40 1 4.7529 -1.2133 9.6349 41 1 5.5470 -2.7752 9.3215 42 1 5.3708 -2.9795 11.8420 43 1 6.2879 -1.8219 12.8358 44 1 4.8112 -1.2965 11.9927 45 1 8.3378 -2.0111 9.8624 46 1 8.2869 -2.2270 11.6283 47 1 7.4868 -3.4083 10.5638 48 1 5.5749 0.8103 6.4133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261508507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:33 Heat of formation + Delta-G solvation = 41.540422 kcal Electronic energy + Delta-G solvation = -28818.575397 eV Core-core repulsion = 24718.904263 eV Total energy + Delta-G solvation = -4099.671134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60883 -40.24201 -38.32874 -37.98899 -36.00942 -34.80650 -33.34602 -32.73868 -30.27363 -30.15897 -28.60858 -28.12129 -26.38673 -25.28531 -24.81984 -24.17643 -22.31036 -21.43162 -21.29488 -20.08482 -18.94259 -17.74470 -17.59215 -17.09774 -16.56896 -16.35533 -15.97481 -15.72105 -15.47336 -15.30180 -14.85894 -14.73320 -14.08572 -13.96618 -13.87006 -13.65596 -13.22017 -13.01773 -12.94010 -12.80752 -12.56680 -12.51016 -12.28516 -12.16656 -12.00174 -11.78532 -11.69552 -11.63550 -11.33568 -10.93652 -10.90748 -10.74044 -10.53725 -9.95868 -9.80767 -9.60284 -9.13451 -8.98404 -8.94851 -8.37502 -7.97291 -7.81300 -6.54113 -4.18330 1.40610 1.88239 2.05792 2.74281 2.77183 3.33842 3.43576 3.44892 3.58116 3.66233 3.97347 4.23795 4.31796 4.41968 4.54219 4.62686 4.71340 4.77684 4.86910 4.92982 4.99465 5.05973 5.18263 5.21783 5.30091 5.36479 5.40432 5.40938 5.53568 5.86129 5.97389 6.17367 6.27133 6.33409 6.37306 6.37670 6.46932 6.53908 6.67264 6.77815 6.86702 6.95973 7.18558 7.26978 7.51151 7.70880 7.92410 8.13893 8.29207 8.46750 8.83023 9.50245 10.84339 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033808 B = 0.001919 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.995608 B =14583.651508 C =14765.704611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.232 3.768 3 H 0.057 0.943 4 C -0.614 4.614 5 H 0.063 0.937 6 C 0.038 3.962 7 N -0.897 5.897 8 Si 1.040 2.960 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.278 1.278 12 N -0.547 5.547 13 C 0.088 3.912 14 C 0.498 3.502 15 O -0.540 6.540 16 C 0.510 3.490 17 O -0.507 6.507 18 N -0.620 5.620 19 C 0.003 3.997 20 C 0.056 3.944 21 N -0.288 5.288 22 N -0.370 5.370 23 C 0.145 3.855 24 C 0.042 3.958 25 N -0.546 5.546 26 C 0.025 3.975 27 C 0.016 3.984 28 C 0.023 3.977 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.269 0.731 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.421 0.579 37 H 0.208 0.792 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.030 0.970 48 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 0.093 28.252 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.131 3.869 3 H 0.075 0.925 4 C -0.652 4.652 5 H 0.081 0.919 6 C -0.169 4.169 7 N -0.530 5.530 8 Si 0.868 3.132 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.204 1.204 12 N -0.277 5.277 13 C -0.055 4.055 14 C 0.279 3.721 15 O -0.420 6.420 16 C 0.293 3.707 17 O -0.382 6.382 18 N -0.267 5.267 19 C -0.102 4.102 20 C -0.131 4.131 21 N -0.110 5.110 22 N -0.155 5.155 23 C 0.023 3.977 24 C -0.087 4.087 25 N -0.271 5.271 26 C -0.123 4.123 27 C -0.132 4.132 28 C -0.124 4.124 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.258 0.742 37 H 0.224 0.776 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.651 0.586 28.009 29.041 hybrid contribution 0.181 -1.028 0.383 1.112 sum 7.831 -0.442 28.392 29.455 Atomic orbital electron populations 1.22537 0.98075 1.01622 0.99901 1.19405 0.90948 0.94698 0.81867 0.92509 1.22144 1.41623 1.10686 0.90726 0.91867 1.25693 0.94361 1.05097 0.91750 1.70871 1.41143 1.09670 1.31338 0.84127 0.77460 0.75334 0.76310 1.20860 1.19814 1.20425 1.47959 1.45560 1.12798 1.21382 1.21905 1.01082 0.81102 1.01410 1.19610 0.81680 0.87149 0.83706 1.90705 1.61283 1.14531 1.75436 1.20611 0.79235 0.87547 0.83290 1.90595 1.57398 1.14119 1.76076 1.42495 1.51879 1.11661 1.20650 1.17769 1.06983 0.92530 0.92912 1.24584 0.98799 0.94939 0.94802 1.77370 1.16718 1.04788 1.12100 1.48124 1.43613 1.04426 1.19380 1.21595 0.93379 1.03222 0.79531 1.22360 0.96980 1.00777 0.88570 1.61934 1.06397 1.56217 1.02516 1.22384 0.98055 0.99165 0.92696 1.22515 0.92059 0.95599 1.02997 1.21810 1.02576 0.95334 0.92707 0.91399 0.92835 0.95217 0.92076 0.92485 0.90667 0.91182 0.74180 0.77589 0.89751 0.87742 0.90072 0.92874 0.95304 0.90972 0.91132 0.91048 0.91018 0.95127 0.80402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.74 37.16 0.32 -3.15 16 2 C 0.23 5.54 2.21 -69.08 -0.15 5.39 16 3 H 0.06 1.44 5.56 -51.93 -0.29 1.16 16 4 C -0.61 -16.80 8.67 -34.44 -0.30 -17.10 16 5 H 0.06 1.87 7.80 -52.48 -0.41 1.46 16 6 C 0.04 1.06 5.34 -17.82 -0.10 0.96 16 7 N -0.90 -26.80 13.70 55.43 0.76 -26.04 16 8 Si 1.04 24.72 26.45 -169.99 -4.50 20.22 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.27 -5.87 5.51 56.52 0.31 -5.56 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.55 -11.65 2.75 -175.82 -0.48 -12.13 16 13 C 0.09 1.63 8.36 59.85 0.50 2.13 16 14 C 0.50 9.97 7.72 -11.64 -0.09 9.88 16 15 O -0.54 -11.70 15.83 5.49 0.09 -11.61 16 16 C 0.51 8.58 7.67 -11.64 -0.09 8.49 16 17 O -0.51 -8.79 10.54 5.45 0.06 -8.74 16 18 N -0.62 -8.46 5.45 -10.48 -0.06 -8.52 16 19 C 0.00 0.04 6.90 -83.96 -0.58 -0.54 16 20 C 0.06 0.78 10.84 -17.19 -0.19 0.59 16 21 N -0.29 -3.77 12.40 30.72 0.38 -3.39 16 22 N -0.37 -3.78 3.68 -61.16 -0.23 -4.01 16 23 C 0.14 1.01 6.43 -4.05 -0.03 0.98 16 24 C 0.04 0.30 5.14 -3.83 -0.02 0.28 16 25 N -0.55 -3.43 5.02 -251.26 -1.26 -4.69 16 26 C 0.03 0.13 9.57 60.06 0.57 0.71 16 27 C 0.02 0.09 9.32 60.07 0.56 0.65 16 28 C 0.02 0.23 11.49 -16.91 -0.19 0.04 16 29 H 0.07 1.47 4.85 -51.93 -0.25 1.22 16 30 H 0.05 1.10 6.90 -51.93 -0.36 0.74 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 33 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 34 H 0.07 1.26 6.00 -51.93 -0.31 0.95 16 35 H 0.07 1.27 6.55 -51.93 -0.34 0.93 16 36 H 0.42 4.98 8.31 -40.82 -0.34 4.65 16 37 H 0.21 3.03 5.92 -52.49 -0.31 2.72 16 38 H 0.08 0.55 6.55 -51.93 -0.34 0.21 16 39 H 0.10 0.53 8.07 -51.93 -0.42 0.11 16 40 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 41 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 42 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 43 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 44 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 45 H 0.07 0.33 6.47 -51.92 -0.34 0.00 16 46 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 47 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -32.73 386.77 -6.34 -39.07 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.16 Total: 4.70 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 0.23 Total: 9.30 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.89 Total: -58.78 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.14 Total: -20.35 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.50 Total: 20.22 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.73 -6.34 -39.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261508507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.610 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds