Wall clock time and date at job start Tue Mar 31 2020 19:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47045 * 2 1 4 4 C 1.50697 * 109.47047 * 239.99556 * 2 1 3 5 5 H 1.08003 * 120.00370 * 245.65422 * 4 2 1 6 6 C 1.37883 * 119.99810 * 65.66458 * 4 2 1 7 7 N 1.31519 * 119.99799 * 197.82108 * 6 4 2 8 8 Si 1.86794 * 119.99975 * 18.09287 * 6 4 2 9 9 H 1.48504 * 109.46909 * 179.73043 * 8 6 4 10 10 H 1.48498 * 109.47052 * 299.72438 * 8 6 4 11 11 H 1.48496 * 109.47306 * 59.73009 * 8 6 4 12 12 N 1.46500 * 109.46867 * 119.99947 * 2 1 3 13 13 C 1.46502 * 120.00368 * 60.00028 * 12 2 1 14 14 C 1.34780 * 119.99656 * 240.00314 * 12 2 1 15 15 O 1.21363 * 120.00187 * 5.67265 * 14 12 2 16 16 C 1.49332 * 120.00029 * 185.67993 * 14 12 2 17 17 O 1.21407 * 119.99650 * 5.78320 * 16 14 12 18 18 N 1.34767 * 120.00382 * 185.78061 * 16 14 12 19 19 C 1.40475 * 120.00466 * 179.97438 * 18 16 14 20 20 C 1.40347 * 126.11143 * 0.02562 * 19 18 16 21 21 N 1.30825 * 108.20929 * 180.02562 * 20 19 18 22 22 N 1.40064 * 108.36543 * 0.02562 * 21 20 19 23 23 C 1.46497 * 125.99317 * 180.02562 * 22 21 20 24 24 C 1.52991 * 109.47173 * 304.97195 * 23 22 21 25 25 N 1.46903 * 109.47623 * 180.02562 * 24 23 22 26 26 C 1.46895 * 111.00428 * 170.00237 * 25 24 23 27 27 C 1.46905 * 110.99677 * 293.95703 * 25 24 23 28 28 C 1.35230 * 108.00967 * 359.73478 * 22 21 20 29 29 H 1.08996 * 109.47294 * 54.27692 * 1 2 3 30 30 H 1.09004 * 109.47266 * 174.27011 * 1 2 3 31 31 H 1.09000 * 109.47075 * 294.27508 * 1 2 3 32 32 H 0.96998 * 119.99618 * 355.23334 * 7 6 4 33 33 H 1.08998 * 109.46699 * 95.61433 * 13 12 2 34 34 H 1.08996 * 109.46873 * 215.61600 * 13 12 2 35 35 H 1.08999 * 109.46463 * 335.61391 * 13 12 2 36 36 H 0.97004 * 119.99711 * 359.97438 * 18 16 14 37 37 H 1.07994 * 125.89581 * 359.97438 * 20 19 18 38 38 H 1.09000 * 109.47388 * 64.97505 * 23 22 21 39 39 H 1.09001 * 109.47119 * 184.97002 * 23 22 21 40 40 H 1.09000 * 109.47832 * 299.99973 * 24 23 22 41 41 H 1.09006 * 109.47460 * 60.00317 * 24 23 22 42 42 H 1.08992 * 109.47245 * 60.00060 * 26 25 24 43 43 H 1.09001 * 109.46826 * 180.02562 * 26 25 24 44 44 H 1.09005 * 109.47039 * 299.99704 * 26 25 24 45 45 H 1.09009 * 109.47092 * 59.99712 * 27 25 24 46 46 H 1.08997 * 109.46863 * 179.97438 * 27 25 24 47 47 H 1.08997 * 109.47290 * 299.99369 * 27 25 24 48 48 H 1.08001 * 126.17956 * 180.27015 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5759 -1.6388 -1.1339 6 6 1.7982 -0.1753 -2.4794 7 7 1.9107 -0.9307 -3.5501 8 14 1.3286 1.6244 -2.6512 9 1 1.1392 1.9516 -4.0873 10 1 0.0643 1.8786 -1.9148 11 1 2.4087 2.4738 -2.0883 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0017 1.1521 1.9462 16 6 3.3950 -0.7711 3.2352 17 8 3.2743 -1.9765 3.3154 18 7 4.0723 -0.0970 4.1855 19 6 4.6381 -0.7889 5.2692 20 6 4.5774 -2.1737 5.4890 21 7 5.2180 -2.4401 6.5981 22 7 5.7082 -1.2382 7.1242 23 6 6.4839 -1.0914 8.3583 24 6 5.7131 -1.7168 9.5225 25 7 6.4905 -1.5691 10.7602 26 6 5.6884 -1.9409 11.9333 27 6 7.7304 -2.3547 10.6998 28 6 5.3455 -0.2378 6.2897 29 1 -0.3634 0.6000 -0.8343 30 1 -0.3634 -1.0226 -0.1026 31 1 -0.3633 0.4225 0.9368 32 1 2.2251 -1.8446 -3.4679 33 1 2.4644 -2.7354 1.0599 34 1 1.5260 -2.2611 2.4961 35 1 0.7394 -2.3264 0.9008 36 1 4.1691 0.8660 4.1211 37 1 4.0859 -2.8948 4.8528 38 1 7.4441 -1.5949 8.2460 39 1 6.6500 -0.0331 8.5593 40 1 4.7529 -1.2133 9.6349 41 1 5.5470 -2.7752 9.3215 42 1 5.3708 -2.9795 11.8420 43 1 6.2879 -1.8219 12.8358 44 1 4.8112 -1.2965 11.9927 45 1 8.3378 -2.0111 9.8624 46 1 8.2869 -2.2270 11.6283 47 1 7.4868 -3.4083 10.5638 48 1 5.5749 0.8103 6.4133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261508507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:32 Heat of formation + Delta-G solvation = 16.403194 kcal Electronic energy + Delta-G solvation = -28819.665429 eV Core-core repulsion = 24718.904263 eV Total energy + Delta-G solvation = -4100.761166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.59924 -41.59900 -39.64339 -38.64076 -37.63558 -36.04007 -34.75139 -34.13041 -32.11787 -31.00606 -29.47351 -28.53976 -27.93013 -26.89349 -26.15677 -25.29386 -23.27664 -22.54188 -22.11542 -21.31404 -20.40330 -19.59467 -18.82397 -18.41948 -17.92213 -17.25357 -17.00336 -16.86060 -16.46941 -16.14875 -15.82622 -15.69892 -15.59633 -15.23492 -14.98333 -14.73965 -14.62578 -14.37935 -14.27910 -13.95049 -13.80442 -13.49341 -13.43467 -13.20580 -13.18909 -12.96899 -12.74018 -12.59814 -12.45446 -12.36593 -12.28305 -11.87419 -11.81901 -11.74173 -11.62370 -11.15203 -10.49310 -10.47230 -10.41236 -9.70526 -9.48428 -8.85350 -8.74431 -6.42263 0.18837 0.84117 1.13356 1.45227 1.54665 1.56521 1.66605 1.73244 2.27201 2.44723 2.58429 2.92598 3.02942 3.31873 3.60896 3.78030 3.87023 4.05097 4.21896 4.28368 4.32187 4.40697 4.44912 4.47986 4.49209 4.56412 4.59366 4.67037 4.71147 4.74336 4.76190 4.82384 4.89375 4.98142 5.01648 5.04731 5.08610 5.30550 5.50913 5.63661 5.73622 5.82497 5.91385 5.98464 6.01105 6.05834 6.38416 6.50269 6.56718 6.76545 6.95656 7.34844 8.59696 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033808 B = 0.001919 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.995608 B =14583.651508 C =14765.704611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.231 3.769 3 H 0.046 0.954 4 C -0.612 4.612 5 H 0.027 0.973 6 C -0.009 4.009 7 N -0.927 5.927 8 Si 1.074 2.926 9 H -0.284 1.284 10 H -0.233 1.233 11 H -0.273 1.273 12 N -0.561 5.561 13 C 0.096 3.904 14 C 0.495 3.505 15 O -0.558 6.558 16 C 0.512 3.488 17 O -0.519 6.519 18 N -0.599 5.599 19 C -0.032 4.032 20 C 0.039 3.961 21 N -0.312 5.312 22 N -0.362 5.362 23 C 0.140 3.860 24 C 0.049 3.951 25 N -0.548 5.548 26 C 0.023 3.977 27 C 0.015 3.985 28 C 0.058 3.942 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.254 0.746 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.431 0.569 37 H 0.191 0.809 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.031 0.969 42 H 0.022 0.978 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.021 0.979 48 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.927 2.395 31.112 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.129 3.871 3 H 0.064 0.936 4 C -0.650 4.650 5 H 0.045 0.955 6 C -0.209 4.209 7 N -0.562 5.562 8 Si 0.896 3.104 9 H -0.210 1.210 10 H -0.157 1.157 11 H -0.199 1.199 12 N -0.291 5.291 13 C -0.047 4.047 14 C 0.277 3.723 15 O -0.438 6.438 16 C 0.294 3.706 17 O -0.395 6.395 18 N -0.246 5.246 19 C -0.136 4.136 20 C -0.147 4.147 21 N -0.134 5.134 22 N -0.146 5.146 23 C 0.019 3.981 24 C -0.080 4.080 25 N -0.272 5.272 26 C -0.125 4.125 27 C -0.133 4.133 28 C -0.092 4.092 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.270 0.730 37 H 0.207 0.793 38 H 0.110 0.890 39 H 0.153 0.847 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.040 0.960 48 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.044 2.865 30.945 32.102 hybrid contribution 0.240 -1.795 -0.307 1.837 sum 8.283 1.070 30.639 31.757 Atomic orbital electron populations 1.22388 0.95690 1.02034 1.01224 1.19202 0.92682 0.93674 0.81526 0.93575 1.22275 1.40639 1.09355 0.92714 0.95496 1.27019 0.94068 1.08306 0.91542 1.70993 1.43568 1.09267 1.32388 0.83718 0.79195 0.70768 0.76762 1.20992 1.15710 1.19909 1.47963 1.46371 1.13634 1.21149 1.21914 1.00431 0.79660 1.02655 1.20139 0.80820 0.87084 0.84250 1.90677 1.61577 1.15393 1.76140 1.19928 0.80175 0.87209 0.83253 1.90606 1.58356 1.14282 1.76272 1.42223 1.50495 1.11970 1.19890 1.17904 1.09500 0.92271 0.93943 1.24420 0.99483 0.95568 0.95233 1.77342 1.17507 1.06434 1.12161 1.48485 1.42522 1.03741 1.19866 1.21919 0.92978 1.05211 0.77943 1.22225 0.97104 0.99355 0.89284 1.61989 1.06612 1.56358 1.02232 1.22443 0.98367 0.98849 0.92840 1.22576 0.91781 0.94997 1.03974 1.22475 0.99255 0.96917 0.90513 0.91535 0.92683 0.92586 0.93673 0.94036 0.88576 0.91027 0.73021 0.79260 0.88991 0.84671 0.90490 0.95108 0.95908 0.89736 0.90888 0.90333 0.89858 0.95990 0.75851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.33 8.74 71.98 0.63 -5.70 16 2 C 0.23 10.96 2.21 44.25 0.10 11.05 16 3 H 0.05 2.30 5.56 -2.39 -0.01 2.29 16 4 C -0.61 -34.20 8.67 25.60 0.22 -33.98 16 5 H 0.03 1.66 7.80 -2.91 -0.02 1.64 16 6 C -0.01 -0.54 5.34 84.66 0.45 -0.08 16 7 N -0.93 -56.91 13.70 21.45 0.29 -56.62 16 8 Si 1.07 49.11 26.45 68.60 1.81 50.93 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 10 H -0.23 -9.18 5.51 99.48 0.55 -8.63 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.56 -23.81 2.75 -828.52 -2.28 -26.09 16 13 C 0.10 3.58 8.36 127.77 1.07 4.65 16 14 C 0.49 19.54 7.72 87.23 0.67 20.22 16 15 O -0.56 -23.60 15.83 -3.29 -0.05 -23.66 16 16 C 0.51 16.92 7.67 87.23 0.67 17.59 16 17 O -0.52 -18.06 10.54 -3.42 -0.04 -18.09 16 18 N -0.60 -15.35 5.45 -305.42 -1.67 -17.01 16 19 C -0.03 -0.76 6.90 37.71 0.26 -0.50 16 20 C 0.04 1.08 10.84 85.36 0.93 2.00 16 21 N -0.31 -7.92 12.40 -56.72 -0.70 -8.62 16 22 N -0.36 -6.43 3.68 -347.40 -1.28 -7.71 16 23 C 0.14 1.51 6.43 86.38 0.56 2.06 16 24 C 0.05 0.62 5.14 86.30 0.44 1.06 16 25 N -0.55 -5.72 5.02 -948.84 -4.76 -10.48 16 26 C 0.02 0.20 9.57 127.69 1.22 1.43 16 27 C 0.01 0.12 9.32 127.69 1.19 1.31 16 28 C 0.06 0.93 11.49 83.62 0.96 1.89 16 29 H 0.07 2.71 4.85 -2.39 -0.01 2.69 16 30 H 0.05 2.20 6.90 -2.38 -0.02 2.18 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.25 15.85 8.73 -92.71 -0.81 15.05 16 33 H 0.04 1.66 8.09 -2.39 -0.02 1.64 16 34 H 0.10 3.19 6.00 -2.39 -0.01 3.17 16 35 H 0.07 2.61 6.55 -2.39 -0.02 2.60 16 36 H 0.43 9.19 8.31 -92.70 -0.77 8.42 16 37 H 0.19 5.77 5.92 -2.91 -0.02 5.76 16 38 H 0.09 0.92 6.55 -2.39 -0.02 0.91 16 39 H 0.14 0.71 8.07 -2.39 -0.02 0.69 16 40 H 0.08 1.03 8.06 -2.39 -0.02 1.01 16 41 H 0.03 0.53 8.12 -2.38 -0.02 0.51 16 42 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.08 0.54 8.12 -2.39 -0.02 0.52 16 44 H 0.07 0.61 8.12 -2.38 -0.02 0.59 16 45 H 0.08 0.54 6.47 -2.38 -0.02 0.53 16 46 H 0.08 0.52 8.12 -2.39 -0.02 0.50 16 47 H 0.02 0.22 8.14 -2.39 -0.02 0.21 16 48 H 0.23 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -73.05 386.77 0.72 -72.32 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.02 Total: 22.03 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 9.37 Total: 23.01 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -10.40 Total: -126.54 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.09 Total: -41.75 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.81 Total: 50.93 kcal Total: -73.05 0.72 -72.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261508507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.728 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds