Wall clock time and date at job start Tue Mar 31 2020 19:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47153 * 120.00289 * 2 1 3 5 5 H 1.07998 * 119.99690 * 119.99571 * 4 2 1 6 6 C 1.37870 * 120.00024 * 300.00190 * 4 2 1 7 7 N 1.31515 * 120.00024 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46878 * 269.99377 * 8 6 4 10 10 H 1.48499 * 109.47328 * 29.99192 * 8 6 4 11 11 H 1.48502 * 109.47325 * 149.99759 * 8 6 4 12 12 N 1.46506 * 109.46926 * 240.00010 * 2 1 3 13 13 C 1.46497 * 120.00099 * 299.99968 * 12 2 1 14 14 C 1.34777 * 119.99770 * 120.00446 * 12 2 1 15 15 O 1.21366 * 120.00026 * 356.42197 * 14 12 2 16 16 C 1.49327 * 120.00058 * 176.42677 * 14 12 2 17 17 O 1.21410 * 119.99742 * 5.91672 * 16 14 12 18 18 N 1.34774 * 120.00299 * 185.91783 * 16 14 12 19 19 C 1.40485 * 119.99881 * 179.97438 * 18 16 14 20 20 C 1.40331 * 126.11610 * 359.69160 * 19 18 16 21 21 N 1.30823 * 108.20779 * 179.85054 * 20 19 18 22 22 N 1.40052 * 108.36670 * 0.40870 * 21 20 19 23 23 C 1.46501 * 125.99655 * 179.71924 * 22 21 20 24 24 C 1.53002 * 109.46914 * 305.02103 * 23 22 21 25 25 N 1.46901 * 109.46929 * 179.97438 * 24 23 22 26 26 C 1.46898 * 110.99752 * 66.04965 * 25 24 23 27 27 C 1.46902 * 110.99739 * 190.00111 * 25 24 23 28 28 C 1.35224 * 108.01022 * 359.73720 * 22 21 20 29 29 H 1.08992 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46717 * 299.99872 * 1 2 3 31 31 H 1.09004 * 109.46738 * 59.99683 * 1 2 3 32 32 H 0.97002 * 120.00535 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46893 * 95.98237 * 13 12 2 34 34 H 1.08995 * 109.47538 * 215.98317 * 13 12 2 35 35 H 1.09001 * 109.47220 * 335.98930 * 13 12 2 36 36 H 0.96998 * 119.99784 * 0.02562 * 18 16 14 37 37 H 1.08003 * 125.89666 * 359.97438 * 20 19 18 38 38 H 1.08994 * 109.47278 * 65.02013 * 23 22 21 39 39 H 1.09001 * 109.47186 * 185.02370 * 23 22 21 40 40 H 1.08994 * 109.47074 * 300.00035 * 24 23 22 41 41 H 1.09001 * 109.46976 * 60.00138 * 24 23 22 42 42 H 1.08997 * 109.47707 * 59.99838 * 26 25 24 43 43 H 1.09010 * 109.46705 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.47126 * 299.99171 * 26 25 24 45 45 H 1.08997 * 109.46981 * 59.99989 * 27 25 24 46 46 H 1.09003 * 109.46945 * 180.02562 * 27 25 24 47 47 H 1.09000 * 109.47318 * 299.99942 * 27 25 24 48 48 H 1.07999 * 126.18053 * 180.02562 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 1.3447 -2.1617 4.4123 10 1 3.6308 -1.7569 3.7119 11 1 2.4873 -0.1404 5.1120 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.0330 1.1435 -1.9252 16 6 3.3566 -0.7607 -3.2609 17 8 3.0312 -1.9099 -3.4788 18 7 4.2264 -0.1395 -4.0819 19 6 4.7568 -0.8219 -5.1894 20 6 4.4761 -2.1469 -5.5566 21 7 5.1541 -2.4229 -6.6409 22 7 5.8965 -1.2902 -6.9975 23 6 6.7960 -1.1775 -8.1484 24 6 7.8350 -2.2993 -8.0954 25 7 8.7366 -2.1867 -9.2497 26 6 9.5418 -0.9605 -9.1710 27 6 9.5946 -3.3735 -9.3653 28 6 5.6378 -0.3189 -6.0930 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7095 1.1616 3.4844 33 1 0.7982 -2.1450 -2.0878 34 1 2.5056 -2.6084 -1.8917 35 1 1.4258 -2.5697 -0.4772 36 1 4.4867 0.7785 -3.9076 37 1 3.8131 -2.8216 -5.0354 38 1 6.2193 -1.2596 -9.0696 39 1 7.3017 -0.2123 -8.1211 40 1 8.4117 -2.2172 -7.1741 41 1 7.3293 -3.2645 -8.1226 42 1 10.1404 -0.9767 -8.2603 43 1 10.2006 -0.9024 -10.0375 44 1 8.8821 -0.0929 -9.1569 45 1 8.9732 -4.2600 -9.4923 46 1 10.2523 -3.2637 -10.2276 47 1 10.1951 -3.4771 -8.4616 48 1 6.0556 0.6770 -6.0897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261508508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:35 Heat of formation + Delta-G solvation = 42.994798 kcal Electronic energy + Delta-G solvation = -28775.975948 eV Core-core repulsion = 24676.367881 eV Total energy + Delta-G solvation = -4099.608067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56434 -40.14719 -38.25708 -37.90214 -35.87029 -34.72509 -33.30754 -32.74494 -30.12540 -29.54373 -28.54989 -28.10504 -26.22424 -25.30375 -25.07783 -24.19239 -22.25541 -21.47091 -21.24716 -20.13616 -19.00504 -17.68853 -17.13838 -16.56235 -16.33629 -16.21708 -15.93620 -15.51563 -15.40876 -15.27534 -14.87908 -14.69705 -14.36773 -14.05760 -13.79811 -13.54402 -13.22445 -12.97644 -12.92505 -12.55217 -12.47003 -12.33452 -12.23940 -12.13424 -11.73397 -11.63314 -11.60490 -11.12534 -10.89721 -10.84234 -10.81243 -10.76546 -10.51558 -10.30198 -10.20642 -9.56504 -9.22789 -8.97366 -8.77207 -8.46969 -7.87798 -7.67648 -6.12325 -4.20690 1.46635 1.95754 2.10093 2.81698 2.85569 3.25308 3.32279 3.35817 3.45170 3.78069 4.06633 4.17288 4.37108 4.46298 4.56895 4.64248 4.78510 4.82014 4.83154 4.93952 5.03985 5.07990 5.19369 5.24208 5.34040 5.39403 5.40846 5.44964 5.57132 5.97365 6.15817 6.26119 6.35678 6.40239 6.61275 6.69189 6.73351 6.76837 6.84955 6.97885 7.16036 7.30452 7.40571 7.56613 7.65373 7.89672 8.05373 8.09571 8.36179 8.61662 8.85445 9.45494 10.93070 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023511 B = 0.001945 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.666582 B =14390.400677 C =14663.581892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.254 3.746 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.550 5.550 13 C 0.069 3.931 14 C 0.496 3.504 15 O -0.539 6.539 16 C 0.510 3.490 17 O -0.509 6.509 18 N -0.621 5.621 19 C 0.005 3.995 20 C 0.055 3.945 21 N -0.285 5.285 22 N -0.371 5.371 23 C 0.145 3.855 24 C 0.042 3.958 25 N -0.545 5.545 26 C 0.016 3.984 27 C 0.025 3.975 28 C 0.019 3.981 29 H 0.033 0.967 30 H 0.096 0.904 31 H 0.013 0.987 32 H 0.264 0.736 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.421 0.579 37 H 0.208 0.792 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.092 0.908 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.027 0.973 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.792 -3.646 -22.176 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.280 5.280 13 C -0.074 4.074 14 C 0.276 3.724 15 O -0.419 6.419 16 C 0.294 3.706 17 O -0.384 6.384 18 N -0.267 5.267 19 C -0.100 4.100 20 C -0.132 4.132 21 N -0.107 5.107 22 N -0.156 5.156 23 C 0.023 3.977 24 C -0.086 4.086 25 N -0.270 5.270 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.128 4.128 29 H 0.052 0.948 30 H 0.114 0.886 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.258 0.742 37 H 0.225 0.775 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.060 0.940 41 H 0.110 0.890 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.046 0.954 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 13.613 -4.563 -23.426 27.475 hybrid contribution 0.757 0.651 2.321 2.527 sum 14.370 -3.912 -21.105 25.830 Atomic orbital electron populations 1.22085 0.97553 0.99819 1.01026 1.19176 0.91401 0.94587 0.79370 0.91573 1.21285 1.32187 1.13202 0.89997 0.91957 1.24887 0.94869 0.94958 0.99000 1.69876 1.36180 1.22456 1.23920 0.86446 0.79254 0.79273 0.82148 1.20515 1.19872 1.21082 1.48253 1.45255 1.12691 1.21845 1.22185 1.01471 0.81864 1.01907 1.19549 0.81858 0.87157 0.83800 1.90716 1.60539 1.15130 1.75495 1.20794 0.79136 0.86621 0.84063 1.90527 1.58912 1.17184 1.71819 1.42547 1.43354 1.16988 1.23846 1.17781 1.04143 0.94325 0.93758 1.24592 0.99691 0.95102 0.93827 1.77370 1.10064 1.07169 1.16120 1.48112 1.35819 1.09386 1.22256 1.21587 0.89973 0.99836 0.86290 1.22380 0.94188 1.00281 0.91785 1.61911 1.20743 1.03358 1.40959 1.22523 0.97247 0.92483 1.00999 1.22388 0.96422 0.92691 1.00772 1.21789 1.02164 0.96210 0.92662 0.94813 0.88565 0.96790 0.92571 0.93447 0.89162 0.90538 0.74190 0.77533 0.88801 0.88733 0.94028 0.88987 0.95276 0.90952 0.91100 0.90963 0.90990 0.95392 0.80557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.97 37.16 0.33 -3.14 16 2 C 0.25 6.41 2.63 -69.08 -0.18 6.23 16 3 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.07 7.95 -34.44 -0.27 -14.34 16 5 H 0.06 1.64 7.44 -52.49 -0.39 1.25 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.56 11.32 55.43 0.63 -23.93 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.55 -12.00 2.75 -175.81 -0.48 -12.48 16 13 C 0.07 1.28 8.49 59.85 0.51 1.79 16 14 C 0.50 10.22 7.73 -11.64 -0.09 10.13 16 15 O -0.54 -12.22 15.82 5.48 0.09 -12.14 16 16 C 0.51 8.73 7.74 -11.64 -0.09 8.64 16 17 O -0.51 -8.81 10.29 5.44 0.06 -8.75 16 18 N -0.62 -8.71 5.45 -10.48 -0.06 -8.77 16 19 C 0.00 0.06 6.90 -83.96 -0.58 -0.52 16 20 C 0.06 0.77 10.84 -17.19 -0.19 0.59 16 21 N -0.29 -3.78 12.40 30.72 0.38 -3.40 16 22 N -0.37 -3.87 3.68 -61.15 -0.23 -4.09 16 23 C 0.14 1.04 6.43 -4.04 -0.03 1.01 16 24 C 0.04 0.32 5.14 -3.82 -0.02 0.30 16 25 N -0.55 -3.55 5.02 -251.26 -1.26 -4.81 16 26 C 0.02 0.08 9.32 60.06 0.56 0.64 16 27 C 0.03 0.14 9.57 60.07 0.57 0.72 16 28 C 0.02 0.20 11.49 -16.91 -0.19 0.00 16 29 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 30 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.61 5.36 -51.94 -0.28 1.33 16 35 H 0.08 1.46 7.12 -51.93 -0.37 1.10 16 36 H 0.42 5.22 8.31 -40.82 -0.34 4.88 16 37 H 0.21 3.03 5.92 -52.48 -0.31 2.72 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.45 6.48 -51.93 -0.34 0.12 16 40 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 41 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 42 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 43 H 0.07 0.29 8.12 -51.92 -0.42 -0.13 16 44 H 0.07 0.28 6.47 -51.93 -0.34 -0.06 16 45 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 46 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 47 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 48 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -31.27 391.46 -6.97 -38.24 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.21 Total: 4.76 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 0.24 Total: 13.69 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -1.02 Total: -57.48 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.14 Total: -20.89 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.27 -6.97 -38.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261508508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.232 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds