Wall clock time and date at job start Tue Mar 31 2020 19:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47153 * 120.00289 * 2 1 3 5 5 H 1.07998 * 119.99690 * 119.99571 * 4 2 1 6 6 C 1.37870 * 120.00024 * 300.00190 * 4 2 1 7 7 N 1.31515 * 120.00024 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46878 * 269.99377 * 8 6 4 10 10 H 1.48499 * 109.47328 * 29.99192 * 8 6 4 11 11 H 1.48502 * 109.47325 * 149.99759 * 8 6 4 12 12 N 1.46506 * 109.46926 * 240.00010 * 2 1 3 13 13 C 1.46497 * 120.00099 * 299.99968 * 12 2 1 14 14 C 1.34777 * 119.99770 * 120.00446 * 12 2 1 15 15 O 1.21366 * 120.00026 * 356.42197 * 14 12 2 16 16 C 1.49327 * 120.00058 * 176.42677 * 14 12 2 17 17 O 1.21410 * 119.99742 * 5.91672 * 16 14 12 18 18 N 1.34774 * 120.00299 * 185.91783 * 16 14 12 19 19 C 1.40485 * 119.99881 * 179.97438 * 18 16 14 20 20 C 1.40331 * 126.11610 * 359.69160 * 19 18 16 21 21 N 1.30823 * 108.20779 * 179.85054 * 20 19 18 22 22 N 1.40052 * 108.36670 * 0.40870 * 21 20 19 23 23 C 1.46501 * 125.99655 * 179.71924 * 22 21 20 24 24 C 1.53002 * 109.46914 * 305.02103 * 23 22 21 25 25 N 1.46901 * 109.46929 * 179.97438 * 24 23 22 26 26 C 1.46898 * 110.99752 * 66.04965 * 25 24 23 27 27 C 1.46902 * 110.99739 * 190.00111 * 25 24 23 28 28 C 1.35224 * 108.01022 * 359.73720 * 22 21 20 29 29 H 1.08992 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46717 * 299.99872 * 1 2 3 31 31 H 1.09004 * 109.46738 * 59.99683 * 1 2 3 32 32 H 0.97002 * 120.00535 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46893 * 95.98237 * 13 12 2 34 34 H 1.08995 * 109.47538 * 215.98317 * 13 12 2 35 35 H 1.09001 * 109.47220 * 335.98930 * 13 12 2 36 36 H 0.96998 * 119.99784 * 0.02562 * 18 16 14 37 37 H 1.08003 * 125.89666 * 359.97438 * 20 19 18 38 38 H 1.08994 * 109.47278 * 65.02013 * 23 22 21 39 39 H 1.09001 * 109.47186 * 185.02370 * 23 22 21 40 40 H 1.08994 * 109.47074 * 300.00035 * 24 23 22 41 41 H 1.09001 * 109.46976 * 60.00138 * 24 23 22 42 42 H 1.08997 * 109.47707 * 59.99838 * 26 25 24 43 43 H 1.09010 * 109.46705 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.47126 * 299.99171 * 26 25 24 45 45 H 1.08997 * 109.46981 * 59.99989 * 27 25 24 46 46 H 1.09003 * 109.46945 * 180.02562 * 27 25 24 47 47 H 1.09000 * 109.47318 * 299.99942 * 27 25 24 48 48 H 1.07999 * 126.18053 * 180.02562 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 1.3447 -2.1617 4.4123 10 1 3.6308 -1.7569 3.7119 11 1 2.4873 -0.1404 5.1120 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.0330 1.1435 -1.9252 16 6 3.3566 -0.7607 -3.2609 17 8 3.0312 -1.9099 -3.4788 18 7 4.2264 -0.1395 -4.0819 19 6 4.7568 -0.8219 -5.1894 20 6 4.4761 -2.1469 -5.5566 21 7 5.1541 -2.4229 -6.6409 22 7 5.8965 -1.2902 -6.9975 23 6 6.7960 -1.1775 -8.1484 24 6 7.8350 -2.2993 -8.0954 25 7 8.7366 -2.1867 -9.2497 26 6 9.5418 -0.9605 -9.1710 27 6 9.5946 -3.3735 -9.3653 28 6 5.6378 -0.3189 -6.0930 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7095 1.1616 3.4844 33 1 0.7982 -2.1450 -2.0878 34 1 2.5056 -2.6084 -1.8917 35 1 1.4258 -2.5697 -0.4772 36 1 4.4867 0.7785 -3.9076 37 1 3.8131 -2.8216 -5.0354 38 1 6.2193 -1.2596 -9.0696 39 1 7.3017 -0.2123 -8.1211 40 1 8.4117 -2.2172 -7.1741 41 1 7.3293 -3.2645 -8.1226 42 1 10.1404 -0.9767 -8.2603 43 1 10.2006 -0.9024 -10.0375 44 1 8.8821 -0.0929 -9.1569 45 1 8.9732 -4.2600 -9.4923 46 1 10.2523 -3.2637 -10.2276 47 1 10.1951 -3.4771 -8.4616 48 1 6.0556 0.6770 -6.0897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261508508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:34 Heat of formation + Delta-G solvation = 20.436714 kcal Electronic energy + Delta-G solvation = -28776.954140 eV Core-core repulsion = 24676.367881 eV Total energy + Delta-G solvation = -4100.586259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56886 -41.53118 -39.55044 -38.63114 -37.52679 -36.00793 -34.67121 -34.10052 -31.44419 -30.98616 -29.43748 -28.51214 -27.77117 -27.31973 -26.14041 -25.28082 -23.26588 -22.60920 -22.07049 -21.39360 -20.43485 -18.77455 -18.60358 -18.17361 -17.84296 -17.13685 -17.00388 -16.72767 -16.66891 -16.14618 -16.04672 -15.72466 -15.56033 -15.09304 -14.99583 -14.67701 -14.41520 -14.33720 -13.99657 -13.87896 -13.55378 -13.41009 -13.18671 -13.06541 -12.99375 -12.73147 -12.69257 -12.67424 -12.59610 -12.27345 -12.22797 -12.19137 -12.08331 -11.87001 -11.66016 -11.20653 -10.56148 -10.45801 -10.25042 -9.49681 -9.45661 -8.81314 -8.15961 -6.32093 0.24769 0.87531 1.17738 1.43652 1.44426 1.54139 1.61978 1.71830 2.32479 2.41519 2.70769 2.94231 3.12529 3.37857 3.54551 3.86925 3.91238 4.05446 4.19132 4.30477 4.37056 4.48285 4.50089 4.52517 4.64504 4.66238 4.73583 4.74585 4.80687 4.82985 4.89078 4.92473 4.98745 5.02322 5.04641 5.23496 5.42202 5.43121 5.63168 5.67081 5.85972 5.91639 5.94644 6.03335 6.10718 6.11605 6.50626 6.61901 6.70582 6.84885 7.04583 7.38557 8.88707 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023511 B = 0.001945 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.666582 B =14390.400677 C =14663.581892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.258 3.742 3 H 0.025 0.975 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.272 1.272 11 H -0.283 1.283 12 N -0.562 5.562 13 C 0.074 3.926 14 C 0.490 3.510 15 O -0.566 6.566 16 C 0.515 3.485 17 O -0.515 6.515 18 N -0.601 5.601 19 C -0.031 4.031 20 C 0.040 3.960 21 N -0.308 5.308 22 N -0.363 5.363 23 C 0.141 3.859 24 C 0.050 3.950 25 N -0.552 5.552 26 C 0.013 3.987 27 C 0.024 3.976 28 C 0.053 3.947 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.429 0.571 37 H 0.194 0.806 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.027 0.973 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.025 0.975 48 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.441 -3.595 -23.683 28.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.157 3.843 3 H 0.043 0.957 4 C -0.580 4.580 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.197 1.197 11 H -0.209 1.209 12 N -0.292 5.292 13 C -0.067 4.067 14 C 0.272 3.728 15 O -0.447 6.447 16 C 0.298 3.702 17 O -0.391 6.391 18 N -0.248 5.248 19 C -0.135 4.135 20 C -0.146 4.146 21 N -0.131 5.131 22 N -0.147 5.147 23 C 0.021 3.979 24 C -0.079 4.079 25 N -0.277 5.277 26 C -0.135 4.135 27 C -0.124 4.124 28 C -0.097 4.097 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.211 0.789 38 H 0.116 0.884 39 H 0.147 0.853 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.044 0.956 48 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 15.289 -4.535 -24.993 29.647 hybrid contribution 0.364 0.684 2.612 2.724 sum 15.654 -3.851 -22.381 27.582 Atomic orbital electron populations 1.21892 0.96648 1.00284 1.00374 1.18821 0.92073 0.92730 0.80673 0.95714 1.21505 1.32345 1.13244 0.90902 0.92141 1.25682 0.94988 0.95607 1.01829 1.69999 1.36959 1.23567 1.24616 0.85444 0.78789 0.78255 0.78456 1.19480 1.19674 1.20882 1.48213 1.45857 1.13748 1.21334 1.22260 1.02475 0.80146 1.01866 1.20156 0.81099 0.86996 0.84504 1.90686 1.61228 1.16432 1.76394 1.19951 0.80223 0.86380 0.83677 1.90529 1.59589 1.17111 1.71899 1.42269 1.42018 1.17124 1.23378 1.17920 1.06484 0.94420 0.94666 1.24457 1.00115 0.95673 0.94383 1.77344 1.10917 1.08679 1.16166 1.48472 1.34996 1.08635 1.22571 1.21898 0.89504 1.01346 0.85198 1.22217 0.94267 0.99490 0.91909 1.61947 1.21256 1.04282 1.40190 1.22611 0.97485 0.92026 1.01330 1.22428 0.96398 0.92414 1.01199 1.22442 0.99510 0.97296 0.90405 0.93651 0.90767 0.95797 0.92442 0.92016 0.88144 0.91194 0.73227 0.78932 0.88380 0.85335 0.94884 0.90988 0.95472 0.90099 0.89745 0.91401 0.89728 0.95646 0.76091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.97 71.98 0.65 -5.79 16 2 C 0.26 13.34 2.63 44.25 0.12 13.46 16 3 H 0.02 1.48 6.90 -2.39 -0.02 1.46 16 4 C -0.54 -29.25 7.95 25.60 0.20 -29.04 16 5 H 0.06 3.21 7.44 -2.91 -0.02 3.19 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -51.41 11.32 21.44 0.24 -51.16 16 8 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 N -0.56 -24.80 2.75 -828.50 -2.28 -27.08 16 13 C 0.07 2.76 8.49 127.77 1.08 3.85 16 14 C 0.49 20.45 7.73 87.23 0.67 21.12 16 15 O -0.57 -26.22 15.82 -3.30 -0.05 -26.27 16 16 C 0.52 17.46 7.74 87.23 0.68 18.14 16 17 O -0.51 -17.68 10.29 -3.43 -0.04 -17.72 16 18 N -0.60 -16.15 5.45 -305.42 -1.67 -17.82 16 19 C -0.03 -0.75 6.90 37.71 0.26 -0.49 16 20 C 0.04 1.10 10.84 85.35 0.93 2.03 16 21 N -0.31 -7.88 12.40 -56.72 -0.70 -8.59 16 22 N -0.36 -6.62 3.68 -347.39 -1.28 -7.90 16 23 C 0.14 1.59 6.43 86.38 0.56 2.14 16 24 C 0.05 0.67 5.14 86.30 0.44 1.11 16 25 N -0.55 -6.08 5.02 -948.84 -4.76 -10.84 16 26 C 0.01 0.09 9.32 127.69 1.19 1.28 16 27 C 0.02 0.23 9.57 127.69 1.22 1.45 16 28 C 0.05 0.88 11.49 83.62 0.96 1.84 16 29 H 0.04 2.02 7.67 -2.39 -0.02 2.00 16 30 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 31 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.10 3.54 5.36 -2.48 -0.01 3.53 16 35 H 0.07 2.66 7.12 -2.39 -0.02 2.65 16 36 H 0.43 9.99 8.31 -92.71 -0.77 9.22 16 37 H 0.19 5.76 5.92 -2.91 -0.02 5.75 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.13 0.62 6.48 -2.39 -0.02 0.60 16 40 H 0.03 0.49 8.12 -2.39 -0.02 0.47 16 41 H 0.07 1.25 8.06 -2.39 -0.02 1.23 16 42 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.08 0.44 8.12 -2.38 -0.02 0.42 16 44 H 0.08 0.34 6.47 -2.39 -0.02 0.32 16 45 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 46 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 47 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.22 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -69.07 391.46 1.11 -67.96 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.21 Total: 22.15 kcal Atomic # 6 Polarization: 23.18 SS G_CDS: 9.41 Total: 32.58 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -10.45 Total: -123.39 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.09 Total: -43.99 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -69.07 1.11 -67.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261508508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.398 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds